mRNA_H-paniculata_contig25344.6899.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig25344.6899.1
Unique NamemRNA_H-paniculata_contig25344.6899.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig25344.6899.1 vs. uniprot
Match: A0A6H5L1V0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1V0_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 5.300e-15
Identity = 31/44 (70.45%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:    1 NDCSVCDNLTRAQEEALATYDNGGKRVVCDPTCVDGVSDPSHCN 132
            ++CSVC NLT  Q   LA+YDNGGK+VVCDPTC+DGV+DP HCN
Sbjct:   13 DECSVCSNLTDEQVAILASYDNGGKQVVCDPTCLDGVTDPLHCN 56
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BLAST of mRNA_H-paniculata_contig25344.6899.1 vs. uniprot
Match: D7FTU6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTU6_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 8.520e-15
Identity = 31/44 (70.45%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:    1 NDCSVCDNLTRAQEEALATYDNGGKRVVCDPTCVDGVSDPSHCN 132
            ++CSVC NLT  Q   LA+YDNGGK+VVCDPTC+DGV+DP HCN
Sbjct: 1016 DECSVCSNLTDEQVAVLASYDNGGKQVVCDPTCLDGVTDPLHCN 1059
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BLAST of mRNA_H-paniculata_contig25344.6899.1 vs. uniprot
Match: A0A6H5L314_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L314_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 1.170e-14
Identity = 31/44 (70.45%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:    1 NDCSVCDNLTRAQEEALATYDNGGKRVVCDPTCVDGVSDPSHCN 132
            ++CSVC NLT  Q   LA+YDNGGK+VVCDPTC+DGV+DP HCN
Sbjct:  429 DECSVCSNLTDEQVAILASYDNGGKQVVCDPTCLDGVTDPLHCN 472
[Close]
BLAST of mRNA_H-paniculata_contig25344.6899.1 vs. uniprot
Match: A0A6H5KP86_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP86_9PHAE)

HSP 1 Score: 48.9 bits (115), Expect = 2.000e-5
Identity = 19/28 (67.86%), Postives = 24/28 (85.71%), Query Frame = 1 
Query:    4 DCSVCDNLTRAQEEALATYDNGGKRVVC 87
            DC+ C +L+ AQ EALA+YDNGGKRV+C
Sbjct:  493 DCAACSSLSNAQVEALASYDNGGKRVIC 520
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25344.6899.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5L1V0_9PHAE5.300e-1570.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTU6_ECTSI8.520e-1570.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L314_9PHAE1.170e-1470.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP86_9PHAE2.000e-567.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25344contigH-paniculata_contig25344:2481..2612 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.9
Seed ortholog evalue5.4e-12
Seed eggNOG ortholog2880.D7FTU6
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.structural constituent of cuticle
EggNOG OGsKOG3544@1,KOG3544@2759
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size132
Cds size132
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929747.0926032-CDS-H-paniculata_contig25344:2480..26121622929747.0926032-CDS-H-paniculata_contig25344:2480..2612Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25344 2481..2612 +
1691480993.7379758-CDS-H-paniculata_contig25344:2480..26121691480993.7379758-CDS-H-paniculata_contig25344:2480..2612Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25344 2481..2612 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25344.6899.1prot_H-paniculata_contig25344.6899.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig25344 2481..2612 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig25344.6899.1

>prot_H-paniculata_contig25344.6899.1 ID=prot_H-paniculata_contig25344.6899.1|Name=mRNA_H-paniculata_contig25344.6899.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=44bp
NDCSVCDNLTRAQEEALATYDNGGKRVVCDPTCVDGVSDPSHCN
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mRNA from alignment at H-paniculata_contig25344:2481..2612+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig25344.6899.1 ID=mRNA_H-paniculata_contig25344.6899.1|Name=mRNA_H-paniculata_contig25344.6899.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=132bp|location=Sequence derived from alignment at H-paniculata_contig25344:2481..2612+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACGACTGCTCAGTTTGCGACAATCTCACGAGGGCGCAAGAGGAGGCCCT
TGCTACCTACGATAATGGCGGGAAAAGAGTTGTCTGCGACCCCACCTGCG
TCGACGGAGTTTCCGACCCATCCCACTGCAAT
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Coding sequence (CDS) from alignment at H-paniculata_contig25344:2481..2612+

>mRNA_H-paniculata_contig25344.6899.1 ID=mRNA_H-paniculata_contig25344.6899.1|Name=mRNA_H-paniculata_contig25344.6899.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=264bp|location=Sequence derived from alignment at H-paniculata_contig25344:2481..2612+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACGACTGCTCAGTTTGCGACAATCTCACGAGGGCGCAAGAGGAGGCCCT
TGCTACCTACGATAATGGCGGGAAAAGAGTTGTCTGCGACCCCACCTGCG
TCGACGGAGTTTCCGACCCATCCCACTGCAATAACGACTGCTCAGTTTGC
GACAATCTCACGAGGGCGCAAGAGGAGGCCCTTGCTACCTACGATAATGG
CGGGAAAAGAGTTGTCTGCGACCCCACCTGCGTCGACGGAGTTTCCGACC
CATCCCACTGCAAT
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