mRNA_H-paniculata_contig25332.6896.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig25332.6896.1
Unique NamemRNA_H-paniculata_contig25332.6896.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig25332.6896.1 vs. uniprot
Match: A0A4Y2J406_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2J406_ARAVE)

HSP 1 Score: 85.1 bits (209), Expect = 7.780e-18
Identity = 41/114 (35.96%), Postives = 70/114 (61.40%), Query Frame = 3
Query:  165 EMARANMIAANMGHRYWAEAVRSAVYCLTRAPTRLHSGGMPYENGTVRHQSWDHLRVFGWTAYDMFQSQQRRKIDDKAWAGVSLGYDEDSPSYRTYNPENKSVQLSRNVIFDEE 506
            E AR+ + +  +    WAEAV++A+Y   R PT       P+E  T +  S +HLR+FG  AY       R+K++ K+   + +GY+++S +YR ++P  K++++SRNV+F+EE
Sbjct:    6 ESARSMIYSKELPSYLWAEAVKTAIYIWNRTPTSQAPDSTPHELWTGKSTSLNHLRIFGSEAYMYVPDNLRKKLEPKSKKVIFVGYEKESKNYRLFDPVAKTIKVSRNVVFNEE 119          
BLAST of mRNA_H-paniculata_contig25332.6896.1 vs. uniprot
Match: A0A6A3BK46_HIBSY (Annexin 5 isoform 2 n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3BK46_HIBSY)

HSP 1 Score: 86.3 bits (212), Expect = 1.830e-16
Identity = 42/114 (36.84%), Postives = 68/114 (59.65%), Query Frame = 3
Query:  165 EMARANMIAANMGHRYWAEAVRSAVYCLTRAPTRLHSGGMPYENGTVRHQSWDHLRVFGWTAYDMFQSQQRRKIDDKAWAGVSLGYDEDSPSYRTYNPENKSVQLSRNVIFDEE 506
            +MAR+ + +  +   +W +AV  AVY   R+PTR   G  P E  + R     HLR+F   A+     ++R K+D+K  + + +GYD +S  Y+ YNP+NK + +SR+V+F+EE
Sbjct: 1069 DMARSMLKSMKLPKEFWVKAVAYAVYLTNRSPTRSVWGKTPQEAWSERKPDISHLRIFESIAHVHVPDERRTKLDEKRESFIFIGYDANSKGYKLYNPDNKKIVISRDVVFNEE 1182          
BLAST of mRNA_H-paniculata_contig25332.6896.1 vs. uniprot
Match: A0A1X7U495_AMPQE (Uncharacterized protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7U495_AMPQE)

HSP 1 Score: 85.5 bits (210), Expect = 3.240e-16
Identity = 46/113 (40.71%), Postives = 63/113 (55.75%), Query Frame = 3
Query:  165 EMARANMIAANMGHRYWAEAVRSAVYCLTRAPTRLHSGGMPYENGTVRHQSWDHLRVFGWTAYDMFQSQQRRKIDDKAWAGVSLGYDEDSPSYRTYNPENKSVQLSRNVIFDE 503
            E  RA + ++ + HR+WAEA+ +AVY   R+ T+      P+E    R  S  HLRVFG TAY      +R K+D KA   + LGY   +  YR Y+ +   V  SR+VIFDE
Sbjct:  615 EAVRAMLSSSTLPHRFWAEALSTAVYLKNRSYTKAVINMTPHEAWNGRRPSVKHLRVFGCTAYSHIPKDERSKLDPKARRCILLGYSNTTKGYRLYDTKRDRVFYSRDVIFDE 727          
BLAST of mRNA_H-paniculata_contig25332.6896.1 vs. uniprot
Match: A0A7S1T3E5_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1T3E5_9CHLO)

HSP 1 Score: 79.0 bits (193), Expect = 5.150e-16
Identity = 38/83 (45.78%), Postives = 50/83 (60.24%), Query Frame = 3
Query:  264 RLHS---GGMPYENGTVRHQSWDHLRVFGWTAYDMFQSQQRRKIDDKAWAGVSLGYDEDSPSYRTYNPENKSVQLSRNVIFDE 503
            R+HS   GG+P+   T R      +RVFG  AY      QRRK+DD+AW GV +GY  +SP++  YNP  +    SRNV+FDE
Sbjct:    9 RVHSSGAGGVPFTLATGRRADLSSMRVFGCPAYVHVDKSQRRKLDDRAWKGVFVGYASESPAWLVYNPVTRRAVSSRNVVFDE 91          
BLAST of mRNA_H-paniculata_contig25332.6896.1 vs. uniprot
Match: A0A2K3K2Q6_TRIPR (Cysteine-rich receptor-like protein kinase 25-like protein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3K2Q6_TRIPR)

HSP 1 Score: 79.0 bits (193), Expect = 7.050e-16
Identity = 41/105 (39.05%), Postives = 60/105 (57.14%), Query Frame = 3
Query:  189 AANMGHRYWAEAVRSAVYCLTRAPTRLHSGGMPYENGTVRHQSWDHLRVFGWTAYDMFQSQQRRKIDDKAWAGVSLGYDEDSPSYRTYNPENKSVQLSRNVIFDE 503
            A N+  R+W EAV+ A Y +  +PT       P E  + R  S  H +VFG  A+      QR+K+DDK+   V LG  E+S +Y+ Y+P  K + +SR+VIF+E
Sbjct:    4 ARNVPKRFWPEAVKWATYVMNMSPTLSVKDMTPEEAWSGRKPSVHHFKVFGCVAHVHIHDSQRKKLDDKSKKCVLLGVSEESKAYKLYDPIEKKIIISRDVIFEE 108          
BLAST of mRNA_H-paniculata_contig25332.6896.1 vs. uniprot
Match: A0A2K3KT00_TRIPR (Equilibrative nucleoside transporter 3-like protein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3KT00_TRIPR)

HSP 1 Score: 80.1 bits (196), Expect = 8.920e-16
Identity = 41/112 (36.61%), Postives = 66/112 (58.93%), Query Frame = 3
Query:  168 MARANMIAANMGHRYWAEAVRSAVYCLTRAPTRLHSGGMPYENGTVRHQSWDHLRVFGWTAYDMFQSQQRRKIDDKAWAGVSLGYDEDSPSYRTYNPENKSVQLSRNVIFDE 503
            MAR+ +   NM H++W EAV +AV+ + R+PT+      P+E  T    S  H R+FG  ++     Q RRK+DD++   + LGY   + +Y+ Y P++  V +SR++ FDE
Sbjct:    3 MARSMLKGKNMPHKFWGEAVSTAVHIINRSPTKKLKEKTPHEAWTGLKPSVSHFRIFGSLSFRHVPDQVRRKLDDRSQPMILLGYHA-TGAYKLYAPKDNKVVISRDIKFDE 113          
BLAST of mRNA_H-paniculata_contig25332.6896.1 vs. uniprot
Match: A0A0J7KRH5_LASNI (Retroelement pol polyprotein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KRH5_LASNI)

HSP 1 Score: 83.2 bits (204), Expect = 1.420e-15
Identity = 45/114 (39.47%), Postives = 62/114 (54.39%), Query Frame = 3
Query:  165 EMARANMIAANMGHRYWAEAVRSAVYCLTRAPTRLHSGGMPYENGTVRHQSWDHLRVFGWTAYDMFQSQQRRKIDDKAWAGVSLGYDEDSPSYRTYNPENKSVQLSRNVIFDEE 506
            E AR  ++A  +  R WAEAV +AVY L R  T    G  PYE    R  S   LR+FG   Y     ++R+K D KA AG+ +GY + +  YR +  E K +++ RNV+F  E
Sbjct:   35 EAARTMILAKGLDKRLWAEAVNAAVYTLNRTGTSSVQGKTPYEIWFGRLASNIKLRIFGTKTYTHIPKEKRKKWDQKAKAGILVGYGDSTKEYRIWFEERKKIEIHRNVVFANE 148          
BLAST of mRNA_H-paniculata_contig25332.6896.1 vs. uniprot
Match: A0A2K3JMR9_TRIPR (Cysteine-rich receptor-like protein kinase 25-like protein n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3JMR9_TRIPR)

HSP 1 Score: 79.3 bits (194), Expect = 2.290e-15
Identity = 40/113 (35.40%), Postives = 64/113 (56.64%), Query Frame = 3
Query:  168 MARANMIAANMGHRYWAEAVRSAVYCLTRAPTRLHSGGMPYENGTVRHQSWDHLRVFGWTAYDMFQSQQRRKIDDKAWAGVSLGYDEDSPSYRTYNPENKSVQLSRNVIFDEE 506
            M R+ +   ++  ++W EA+  A Y L R+PT       P E  + +  +  H RVFG  AY       R+K+DDK+   + LG  E+S +Y+ Y+P NK V +SR+V+F+E+
Sbjct:    1 MIRSLLSGKSVPKKFWPEALNWATYILNRSPTLSVKDMTPQEAWSGKKPNVQHFRVFGCLAYMHVPDNHRKKLDDKSLKCILLGISEESKAYKLYDPTNKKVIISRDVVFEED 113          
BLAST of mRNA_H-paniculata_contig25332.6896.1 vs. uniprot
Match: A0A8J5LUA7_ZINOF (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5LUA7_ZINOF)

HSP 1 Score: 82.4 bits (202), Expect = 3.300e-15
Identity = 44/112 (39.29%), Postives = 64/112 (57.14%), Query Frame = 3
Query:  168 MARANMIAANMGHRYWAEAVRSAVYCLTRAPTRLHSGGMPYENGTVRHQSWDHLRVFGWTAYDMFQSQQRRKIDDKAWAGVSLGYDEDSPSYRTYNPENKSVQLSRNVIFDE 503
            MAR+ +   +M  R+W EAVR AVY L R PT+      P+E    R     HL+VFG  AY    +   +K+DD++   V LG +E   +YR ++P +  +Q+SR+VIF E
Sbjct:    3 MARSLLKGTHMPARFWGEAVRHAVYLLNRLPTKALGERTPFEAWMGRKPHLAHLKVFGCIAYAKNTTPHLKKLDDRSSPMVYLGVEEGCKAYRLFDPRHNKLQVSRDVIFQE 114          
BLAST of mRNA_H-paniculata_contig25332.6896.1 vs. uniprot
Match: A0A2Z6MGY8_TRISU (Uncharacterized protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6MGY8_TRISU)

HSP 1 Score: 82.4 bits (202), Expect = 3.860e-15
Identity = 45/112 (40.18%), Postives = 62/112 (55.36%), Query Frame = 3
Query:  168 MARANMIAANMGHRYWAEAVRSAVYCLTRAPTRLHSGGMPYENGTVRHQSWDHLRVFGWTAYDMFQSQQRRKIDDKAWAGVSLGYDEDSPSYRTYNPENKSVQLSRNVIFDE 503
            M R  +   ++    W EAV +  Y L   PT+  +G  P E  +    S  HLRVFG  AY+    Q RRK+DDKA   + +GY   +  Y+ Y+P NK+V +SRNV+FDE
Sbjct:  562 MVRCMLKGKHLPKELWGEAVATTTYILNLCPTKRLNGITPEECWSKNKPSVKHLRVFGSIAYNHVSDQLRRKLDDKATTMILVGY-HSTGGYKLYDPVNKNVVVSRNVVFDE 672          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25332.6896.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4Y2J406_ARAVE7.780e-1835.96Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A3BK46_HIBSY1.830e-1636.84Annexin 5 isoform 2 n=1 Tax=Hibiscus syriacus TaxI... [more]
A0A1X7U495_AMPQE3.240e-1640.71Uncharacterized protein n=1 Tax=Amphimedon queensl... [more]
A0A7S1T3E5_9CHLO5.150e-1645.78Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
A0A2K3K2Q6_TRIPR7.050e-1639.05Cysteine-rich receptor-like protein kinase 25-like... [more]
A0A2K3KT00_TRIPR8.920e-1636.61Equilibrative nucleoside transporter 3-like protei... [more]
A0A0J7KRH5_LASNI1.420e-1539.47Retroelement pol polyprotein n=1 Tax=Lasius niger ... [more]
A0A2K3JMR9_TRIPR2.290e-1535.40Cysteine-rich receptor-like protein kinase 25-like... [more]
A0A8J5LUA7_ZINOF3.300e-1539.29Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2Z6MGY8_TRISU3.860e-1540.18Uncharacterized protein n=1 Tax=Trifolium subterra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25332contigH-paniculata_contig25332:210..724 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score93.2
Seed ortholog evalue8.6e-17
Seed eggNOG ortholog3712.Bo1g005190.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Mitochondrial protein
EggNOG OGs37THH@33090,3GG2K@35493,COG2801@1,KOG0017@2759
COG Functional cat.O
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size515
Cds size348
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929746.8818958-CDS-H-paniculata_contig25332:209..5571622929746.8818958-CDS-H-paniculata_contig25332:209..557Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25332 210..557 -
1691480993.6514807-CDS-H-paniculata_contig25332:209..5571691480993.6514807-CDS-H-paniculata_contig25332:209..557Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25332 210..557 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929746.8953805-UTR-H-paniculata_contig25332:557..7241622929746.8953805-UTR-H-paniculata_contig25332:557..724Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25332 558..724 -
1691480993.662551-UTR-H-paniculata_contig25332:557..7241691480993.662551-UTR-H-paniculata_contig25332:557..724Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25332 558..724 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25332.6896.1prot_H-paniculata_contig25332.6896.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig25332 210..557 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig25332.6896.1

>prot_H-paniculata_contig25332.6896.1 ID=prot_H-paniculata_contig25332.6896.1|Name=mRNA_H-paniculata_contig25332.6896.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=116bp
MARANMIAANMGHRYWAEAVRSAVYCLTRAPTRLHSGGMPYENGTVRHQS
WDHLRVFGWTAYDMFQSQQRRKIDDKAWAGVSLGYDEDSPSYRTYNPENK
SVQLSRNVIFDEEDFV
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mRNA from alignment at H-paniculata_contig25332:210..724-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig25332.6896.1 ID=mRNA_H-paniculata_contig25332.6896.1|Name=mRNA_H-paniculata_contig25332.6896.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=515bp|location=Sequence derived from alignment at H-paniculata_contig25332:210..724- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGGCAAGCGGACTGCGGATTAAGCATTTTCGGTCGGATCAGGGAGAATA TACTGGGAAGCCTTTTAAGCAATTCTGCGCGGAAAATGGCATCAAGCAGG AATTCTCTGCGGCCTACACACCGCAACAAAACGGTGTGGCGGAGCGCAGC TGGCGCAGCATTTCGAGATGGCAAGAGCCAACATGATCGCCGCCAACATG GGTCATCGATATTGGGCGGAAGCGGTGCGCTCGGCAGTGTACTGCCTAAC TCGCGCCCCGACGCGACTACACAGCGGAGGAATGCCGTACGAAAATGGCA CGGTGAGACACCAAAGTTGGGACCACCTTCGCGTCTTCGGCTGGACGGCG TATGATATGTTCCAGTCGCAGCAGAGACGCAAGATCGACGACAAAGCATG GGCGGGAGTGTCTCTGGGGTATGACGAGGACAGCCCGAGTTATCGCACAT ATAACCCGGAAAACAAGAGCGTCCAGTTGAGCAGGAACGTGATATTTGAC GAAGAGGACTTCGTA
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Coding sequence (CDS) from alignment at H-paniculata_contig25332:210..724-

>mRNA_H-paniculata_contig25332.6896.1 ID=mRNA_H-paniculata_contig25332.6896.1|Name=mRNA_H-paniculata_contig25332.6896.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at H-paniculata_contig25332:210..724- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCAAGAGCCAACATGATCGCCGCCAACATGGGTCATCGATATTGGGC
GGAAGCGGTGCGCTCGGCAGTGTACTGCCTAACTCGCGCCCCGACGCGAC
TACACAGCGGAGGAATGCCGTACGAAAATGGCACGGTGAGACACCAAAGT
TGGGACCACCTTCGCGTCTTCGGCTGGACGGCGTATGATATGTTCCAGTC
GCAGCAGAGACGCAAGATCGACGACAAAGCATGGGCGGGAGTGTCTCTGG
GGTATGACGAGGACAGCCCGAGTTATCGCACATATAACCCGGAAAACAAG
AGCGTCCAGTTGAGCAGGAACGTGATATTTGACGAAGAGGACTTCGTAAT
GGCAAGAGCCAACATGATCGCCGCCAACATGGGTCATCGATATTGGGCGG
AAGCGGTGCGCTCGGCAGTGTACTGCCTAACTCGCGCCCCGACGCGACTA
CACAGCGGAGGAATGCCGTACGAAAATGGCACGGTGAGACACCAAAGTTG
GGACCACCTTCGCGTCTTCGGCTGGACGGCGTATGATATGTTCCAGTCGC
AGCAGAGACGCAAGATCGACGACAAAGCATGGGCGGGAGTGTCTCTGGGG
TATGACGAGGACAGCCCGAGTTATCGCACATATAACCCGGAAAACAAGAG
CGTCCAGTTGAGCAGGAACGTGATATTTGACGAAGAGGACTTCGTA
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