prot_H-paniculata_contig2533.6895.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig2533.6895.1
Unique Nameprot_H-paniculata_contig2533.6895.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length769
Homology
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BLAST of mRNA_H-paniculata_contig2533.6895.1 vs. uniprot
Match: D8LB51_ECTSI (SAP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB51_ECTSI)

HSP 1 Score: 147 bits (370), Expect = 1.080e-32
Identity = 145/246 (58.94%), Postives = 166/246 (67.48%), Query Frame = 0 
Query:    1 MGVRGDGTDKPRPDAYVYAAAINAVGKAGRPVEAVALLGQMVERRIEPDEVCYGATIAALSEAAGTQTRSTWGAGGQAAAKIVVAPRGTSWASAEGESRDDEDSASTLGAAVSGRNGQRITPTRAHEKAVALIEQMRRDGPRPNEQCFASAMTACARAIQPKAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGMEKAYGIMPDHXXXXXXXXXXXXXXXXXXXRALLEEMPSKG 246
            MG  GDG+D  RPDA+ YAA INA GKAGRPVEAVALL +M  RR++PD VC+G+ I AL E AGTQ RSTWG  G                + EG    D+  AS +             PTRAHEKA+ LI++MRR+GP PN QC+ASA+TACARA  P++ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GMEKAYG+    XXXXXXXX           +ALL EM  +G
Sbjct:  245 MGKGGDGSD--RPDAFAYAATINACGKAGRPVEAVALLTEMPTRRVKPDVVCFGSAIFALGEVAGTQNRSTWGRKG----------------ADEGGEGGDKPIASAVADPK---------PTRAHEKALELIQEMRREGPSPNSQCYASAITACARAHDPRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGMEKAYGVKXXXXXXXXXXXGLSRAGRAREAKALLNEMSERG 463
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BLAST of mRNA_H-paniculata_contig2533.6895.1 vs. uniprot
Match: A0A6H5KL58_9PHAE (SAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL58_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 5.240e-31
Identity = 141/245 (57.55%), Postives = 162/245 (66.12%), Query Frame = 0 
Query:    2 GVRGDGTDKPRPDAYVYAAAINAVGKAGRPVEAVALLGQMVERRIEPDEVCYGATIAALSEAAGTQTRSTWGAGGQAAAKIVVAPRGTSWASAEGESRDDEDSASTLGAAVSGRNGQRITPTRAHEKAVALIEQMRRDGPRPNEQCFASAMTACARAIQPKAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGMEKAYGIMPDHXXXXXXXXXXXXXXXXXXXRALLEEMPSKG 246
            G+   G+D  RPDA+ YAA INA GKAGRPVEAVALL +M  RR++PD VC+G+ I AL E AGTQ RSTWG  G                + EG           + AAV+G       PTRAHEKA+ LI+ MRR+GP PN QC+ASA+TACARA  P++ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GMEKAYG+    XXXXXX             +ALL EM  +G
Sbjct:   54 GMGKGGSD--RPDAFAYAATINACGKAGRPVEAVALLTEMPTRRVKPDVVCFGSAIFALGEVAGTQNRSTWGRKG----------------ANEGGXXXXXXXDMPMAAAVAGPK-----PTRAHEKALELIQDMRREGPSPNSQCYASAITACARAHDPRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGMEKAYGVKXXXXXXXXXISGLSRAGRAREAKALLNEMSERG 275
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2533.6895.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LB51_ECTSI1.080e-3258.94SAP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KL58_9PHAE5.240e-3157.55SAP domain-containing protein n=1 Tax=Ectocarpus s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003034SAP domainSMARTSM00513sap_9coord: 731..765
e-value: 1.6E-7
score: 41.0
IPR003034SAP domainPFAMPF02037SAPcoord: 733..764
e-value: 1.7E-9
score: 37.2
IPR003034SAP domainPROSITEPS50800SAPcoord: 731..765
score: 10.485
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 17..46
e-value: 0.022
score: 15.0
coord: 462..492
e-value: 0.024
score: 14.9
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 217..250
e-value: 2.8E-8
score: 31.4
coord: 289..320
e-value: 8.2E-4
score: 17.4
coord: 427..461
e-value: 2.5E-6
score: 25.3
coord: 392..425
e-value: 0.0016
score: 16.5
coord: 462..494
e-value: 0.0011
score: 17.0
coord: 16..50
e-value: 6.1E-6
score: 24.1
coord: 322..356
e-value: 1.4E-6
score: 26.1
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 214..262
e-value: 3.5E-10
score: 39.9
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 132..192
e-value: 7.8E-4
score: 19.5
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 320..354
score: 11.367
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 14..48
score: 10.578
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 179..209
score: 8.276
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 250..284
score: 9.35
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 390..424
score: 10.216
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 425..459
score: 10.413
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 144..178
score: 8.068
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 285..319
score: 9.46
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 215..249
score: 13.033
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 460..494
score: 9.668
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 355..389
score: 9.175
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 123..278
e-value: 4.9E-42
score: 146.3
coord: 373..547
e-value: 5.8E-30
score: 106.7
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 279..350
e-value: 6.5E-14
score: 53.8
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 7..69
e-value: 3.1E-10
score: 41.7
IPR036361SAP domain superfamilyGENE3D1.10.720.30coord: 721..767
e-value: 7.2E-9
score: 37.0
IPR036361SAP domain superfamilySUPERFAMILY68906SAP domaincoord: 730..764
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 289..455
e-value: 7.5E-16
score: 58.1
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 128..347
coord: 351..496

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2533contigH-paniculata_contig2533:9841..20051 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2533.6895.1mRNA_H-paniculata_contig2533.6895.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig2533 9453..20573 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig2533.6895.1 ID=prot_H-paniculata_contig2533.6895.1|Name=mRNA_H-paniculata_contig2533.6895.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=769bp
MGVRGDGTDKPRPDAYVYAAAINAVGKAGRPVEAVALLGQMVERRIEPDE
VCYGATIAALSEAAGTQTRSTWGAGGQAAAKIVVAPRGTSWASAEGESRD
DEDSASTLGAAVSGRNGQRITPTRAHEKAVALIEQMRRDGPRPNEQCFAS
AMTACARAIQPKAAISLLRTMRDDRVDPNSIVLNAAVDACGKGGAPDEAV
RLLRGMEKAYGIMPDHITYNSAISALSRAGRPLEARALLEEMPSKGLKPD
KVSYAAAMQGFASVGDPRSAAKLTEKMKDGGLEMDAVNYGTAISACAKKA
DVKGAMKLLKEMQASELEANVVVYNSVLDACARAGDPKLAKQLLKVMGES
GIVADVKSYTGAIAACATAGDGNMAMEWLKIMQEKEISPESICYNYAMSA
CGKSGKAEEAAWIMTEMRRQGVTLNKISYSAAMFALGNAGRLEEVLDLLN
EMHKEGVEADEVTYHIAVDAASIAGNLGVAMDLFREMRARGLTVTKRRVA
YIRDKVDGRNNIDTKRRKHKTGNTRKKASGQTAAVTAPATDETLSKSHIL
IASPAEVAAAAMAATSAGEPLPFIEQAEEQLPLESSSAVVRLADEQEEED
DDEYLSISPEIVDSLFVPSDSNGKTRAAVSVADSDESEATDDDLVIITTV
PAMDQISSSSSSSLTTTTTSSPLSSSFGVDKAVGGGEDIVGGGIGGLDSV
AGGREDGGRGVGESAEGVGGGGEVEARLLEIRSMKTIDLKAQLRERGLRL
SGNKADLLARLEDDLLLT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003034SAP_dom
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf
IPR036361SAP_dom_sf
IPR033443PPR_long