mRNA_H-paniculata_contig2533.6895.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2533.6895.1 vs. uniprot
Match: D8LB51_ECTSI (SAP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB51_ECTSI) HSP 1 Score: 216 bits (550), Expect = 1.030e-54 Identity = 181/305 (59.34%), Postives = 213/305 (69.84%), Query Frame = 1
Query: 1 VRQGKELAARIKEQGYNRDWKGILASLEEGPRNAIVCSVAITALGKIGKWPLALDVLNDMGVRGDGTDKPRPDAYVYAAAINAVGKAGRPVEAVALLGQMVERRIEPDEVCYGATIAALSEAAGTQTRSTWGAGGQAAAKIVVAPRGTSWASAEGESRDDEDSASTLGAAVSGRNGQRITPTRAHEKAVALIEQMRRDGPRPNEQCFASAMTACARAIQPKAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGMEKAYGIMPDHXXXXXXXXXXXXXXXXXXXRALLEEMPSKG 915
V +GK LAARIKE RD++G+L +LEEGP+NAIVC+VAIT LG+ GKW A++VL+ MG GDG+D RPDA+ YAA INA GKAGRPVEAVALL +M RR++PD VC+G+ I AL E AGTQ RSTWG G + EG D+ AS + PTRAHEKA+ LI++MRR+GP PN QC+ASA+TACARA P++ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GMEKAYG+ XXXXXXXX +ALL EM +G
Sbjct: 186 VEKGKMLAARIKELAKARDFEGMLEALEEGPKNAIVCTVAITCLGQAGKWREAVEVLDGMGKGGDGSD--RPDAFAYAATINACGKAGRPVEAVALLTEMPTRRVKPDVVCFGSAIFALGEVAGTQNRSTWGRKG----------------ADEGGEGGDKPIASAVADPK---------PTRAHEKALELIQEMRREGPSPNSQCYASAITACARAHDPRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGMEKAYGVKXXXXXXXXXXXGLSRAGRAREAKALLNEMSERG 463
BLAST of mRNA_H-paniculata_contig2533.6895.1 vs. uniprot
Match: A0A6H5KL58_9PHAE (SAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL58_9PHAE) HSP 1 Score: 204 bits (518), Expect = 3.580e-51 Identity = 174/299 (58.19%), Postives = 203/299 (67.89%), Query Frame = 1
Query: 19 LAARIKEQGYNRDWKGILASLEEGPRNAIVCSVAITALGKIGKWPLALDVLNDMGVRGDGTDKPRPDAYVYAAAINAVGKAGRPVEAVALLGQMVERRIEPDEVCYGATIAALSEAAGTQTRSTWGAGGQAAAKIVVAPRGTSWASAEGESRDDEDSASTLGAAVSGRNGQRITPTRAHEKAVALIEQMRRDGPRPNEQCFASAMTACARAIQPKAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGMEKAYGIMPDHXXXXXXXXXXXXXXXXXXXRALLEEMPSKG 915
LAARIKE RD++G+L +LEEGP+NAIVC+VAIT LG+ GKW A++VL+ MG G RPDA+ YAA INA GKAGRPVEAVALL +M RR++PD VC+G+ I AL E AGTQ RSTWG G + EG + AAV+G PTRAHEKA+ LI+ MRR+GP PN QC+ASA+TACARA P++ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GMEKAYG+ XXXXXX +ALL EM +G
Sbjct: 2 LAARIKELAKARDFEGMLEALEEGPKNAIVCTVAITCLGQAGKWREAVEVLDGMGKGGSD----RPDAFAYAATINACGKAGRPVEAVALLTEMPTRRVKPDVVCFGSAIFALGEVAGTQNRSTWGRKG----------------ANEGGXXXXXXXDMPMAAAVAGPK-----PTRAHEKALELIQDMRREGPSPNSQCYASAITACARAHDPRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGMEKAYGVKXXXXXXXXXISGLSRAGRAREAKALLNEMSERG 275 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2533.6895.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2533.6895.1 >prot_H-paniculata_contig2533.6895.1 ID=prot_H-paniculata_contig2533.6895.1|Name=mRNA_H-paniculata_contig2533.6895.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=769bp MGVRGDGTDKPRPDAYVYAAAINAVGKAGRPVEAVALLGQMVERRIEPDEback to top mRNA from alignment at H-paniculata_contig2533:9453..20573- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2533.6895.1 ID=mRNA_H-paniculata_contig2533.6895.1|Name=mRNA_H-paniculata_contig2533.6895.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=11121bp|location=Sequence derived from alignment at H-paniculata_contig2533:9453..20573- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2533:9453..20573- >mRNA_H-paniculata_contig2533.6895.1 ID=mRNA_H-paniculata_contig2533.6895.1|Name=mRNA_H-paniculata_contig2533.6895.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4614bp|location=Sequence derived from alignment at H-paniculata_contig2533:9453..20573- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |