mRNA_H-paniculata_contig25323.6893.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig25323.6893.1 vs. uniprot
Match: D8LAZ6_ECTSI (RNA exonuclease 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAZ6_ECTSI) HSP 1 Score: 168 bits (425), Expect = 5.050e-48 Identity = 84/111 (75.68%), Postives = 91/111 (81.98%), Query Frame = 1
Query: 1 YDKHVVPNERVTDFRTFVSGVKAKDLRSGVPLRQCQNEVAHILDGKVLVGHALHNDLKALLLSHPARMTRDTAKYRPYQKARGKTGGKLYAKSLKILALDHLDRTIQEGQH 333
YDKHV PNERVTDFRTFVSGVKA L+ GV LRQCQ EVA IL KVLVGHAL NDLKAL++SHP R TRDTA YRPYQKA GK GGKL +SLK+L+ +HLDR IQ GQH
Sbjct: 306 YDKHVTPNERVTDFRTFVSGVKANHLKGGVRLRQCQEEVAAILKDKVLVGHALTNDLKALMMSHPPRSTRDTATYRPYQKAHGKAGGKLRPRSLKLLSQEHLDRPIQTGQH 416
BLAST of mRNA_H-paniculata_contig25323.6893.1 vs. uniprot
Match: I2CRR5_NANGC (RNA exonuclease 4 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CRR5_NANGC) HSP 1 Score: 134 bits (336), Expect = 1.240e-37 Identity = 64/111 (57.66%), Postives = 84/111 (75.68%), Query Frame = 1
Query: 1 YDKHVVPNERVTDFRTFVSGVKAKDLRSGVPLRQCQNEVAHILDGKVLVGHALHNDLKALLLSHPARMTRDTAKYRPYQKARGKTGGKLYAKSLKILALDHLDRTIQEGQH 333
YD+HV P ER+TDFRT+VSGVKAK L++ + L++C +VA ++ GK++VGHAL NDL+ L+L HP M RDTA+YR Y ++ GK GGKL + LK LALD L IQEG+H
Sbjct: 17 YDEHVRPRERITDFRTWVSGVKAKHLKAALSLKECILQVADLVKGKIIVGHALKNDLQVLMLQHPVAMIRDTARYRAYMRSHGKEGGKLRPRRLKDLALDFLGMEIQEGKH 127
BLAST of mRNA_H-paniculata_contig25323.6893.1 vs. uniprot
Match: A0A1V9YXD8_9STRA (RNA exonuclease 4 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YXD8_9STRA) HSP 1 Score: 136 bits (343), Expect = 2.930e-37 Identity = 68/111 (61.26%), Postives = 83/111 (74.77%), Query Frame = 1
Query: 1 YDKHVVPNERVTDFRTFVSGVKAKDLRSGVPLRQCQNEVAHILDGKVLVGHALHNDLKALLLSHPARMTRDTAKYRPYQKARGKTGGKLYAKSLKILALDHLDRTIQEGQH 333
YDKHV P ERVTDFRT VSG+++K LR +P QCQ EVA I + K+LVGHAL ND++AL+L+HP M RDT KYRPY + R G KL+ KSLK LAL+ L +TIQ G+H
Sbjct: 98 YDKHVKPMERVTDFRTHVSGIRSKHLRDAIPFTQCQQEVAEIFEDKILVGHALRNDMQALMLTHPKGMIRDTTKYRPYMR-RKVNGTKLFPKSLKNLALEVLKKTIQTGEH 207
BLAST of mRNA_H-paniculata_contig25323.6893.1 vs. uniprot
Match: A0A067BGR3_SAPPC (RNA exonuclease 4 (Fragment) n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BGR3_SAPPC) HSP 1 Score: 132 bits (333), Expect = 1.660e-36 Identity = 65/111 (58.56%), Postives = 83/111 (74.77%), Query Frame = 1
Query: 1 YDKHVVPNERVTDFRTFVSGVKAKDLRSGVPLRQCQNEVAHILDGKVLVGHALHNDLKALLLSHPARMTRDTAKYRPYQKARGKTGGKLYAKSLKILALDHLDRTIQEGQH 333
YD+HV P ERVTDFRT VSG++AK LR +P QCQ +VA I DGK++VGHA+ ND++AL+L+HP + RDT KYRPY + R G KLY K+LK LA + L +TIQ G+H
Sbjct: 105 YDEHVKPLERVTDFRTHVSGIRAKSLRDALPFEQCQKDVAAIFDGKIVVGHAIRNDMQALMLTHPKGLIRDTTKYRPYMR-RKVNGTKLYPKALKHLAEEVLHKTIQTGEH 214
BLAST of mRNA_H-paniculata_contig25323.6893.1 vs. uniprot
Match: W7U6T2_9STRA (RNA exonuclease 4 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U6T2_9STRA) HSP 1 Score: 134 bits (336), Expect = 2.710e-36 Identity = 64/111 (57.66%), Postives = 84/111 (75.68%), Query Frame = 1
Query: 1 YDKHVVPNERVTDFRTFVSGVKAKDLRSGVPLRQCQNEVAHILDGKVLVGHALHNDLKALLLSHPARMTRDTAKYRPYQKARGKTGGKLYAKSLKILALDHLDRTIQEGQH 333
YD+HV P ER+TDFRT+VSGVKAK L++ + L++C +VA ++ GK++VGHAL NDL+ L+L HP M RDTA+YR Y ++ GK GGKL + LK LALD L IQEG+H
Sbjct: 135 YDEHVRPRERITDFRTWVSGVKAKHLKAALSLKECILQVADLVKGKIIVGHALKNDLQVLMLQHPVAMIRDTARYRAYMRSHGKEGGKLRPRRLKDLALDFLGMEIQEGKH 245
BLAST of mRNA_H-paniculata_contig25323.6893.1 vs. uniprot
Match: T0Q8K7_SAPDV (RNA exonuclease 4 n=2 Tax=Saprolegnia TaxID=4769 RepID=T0Q8K7_SAPDV) HSP 1 Score: 132 bits (331), Expect = 2.070e-35 Identity = 65/111 (58.56%), Postives = 82/111 (73.87%), Query Frame = 1
Query: 1 YDKHVVPNERVTDFRTFVSGVKAKDLRSGVPLRQCQNEVAHILDGKVLVGHALHNDLKALLLSHPARMTRDTAKYRPYQKARGKTGGKLYAKSLKILALDHLDRTIQEGQH 333
YD+HV P ERVTDFRT VSG++AK LR +P QCQ +VA I DGK++VGHA+ ND++AL+L+HP RDT KYRPY + R G KLY K+LK LA + L +TIQ G+H
Sbjct: 104 YDEHVKPLERVTDFRTHVSGIRAKSLRDALPFEQCQKDVAAIFDGKIVVGHAIRNDMQALMLTHPKGQIRDTTKYRPYMR-RKVNGTKLYPKALKHLAEEVLHKTIQTGEH 213
BLAST of mRNA_H-paniculata_contig25323.6893.1 vs. uniprot
Match: A0A485LPN0_9STRA (RNA exonuclease 4 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LPN0_9STRA) HSP 1 Score: 129 bits (323), Expect = 5.710e-34 Identity = 62/111 (55.86%), Postives = 83/111 (74.77%), Query Frame = 1
Query: 1 YDKHVVPNERVTDFRTFVSGVKAKDLRSGVPLRQCQNEVAHILDGKVLVGHALHNDLKALLLSHPARMTRDTAKYRPYQKARGKTGGKLYAKSLKILALDHLDRTIQEGQH 333
YD+HV P E+VTDFRT VSG+++K LR+ +P +CQN+V +L K+LVGHA+ NDL+AL+L+HP M RDT KYRPY + R G KL K+L+ LA + LD+TIQ G+H
Sbjct: 126 YDEHVKPLEKVTDFRTHVSGIRSKSLRNAIPFAKCQNDVGELLKDKILVGHAVRNDLQALMLTHPKPMLRDTTKYRPYMRRR-MNGTKLLPKALRHLAQEVLDKTIQTGEH 235
BLAST of mRNA_H-paniculata_contig25323.6893.1 vs. uniprot
Match: A0A6G0X6W8_9STRA (RNA exonuclease 4 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X6W8_9STRA) HSP 1 Score: 127 bits (318), Expect = 1.850e-33 Identity = 63/111 (56.76%), Postives = 82/111 (73.87%), Query Frame = 1
Query: 1 YDKHVVPNERVTDFRTFVSGVKAKDLRSGVPLRQCQNEVAHILDGKVLVGHALHNDLKALLLSHPARMTRDTAKYRPYQKARGKTGGKLYAKSLKILALDHLDRTIQEGQH 333
YD+HV P E+VTDFRT VSG+++K LR+ +P +CQ +V IL K+LVGHAL NDL+AL+L+HP M RDT KYRPY + R G KL K+L+ LA + LD+TIQ G+H
Sbjct: 109 YDEHVKPMEKVTDFRTHVSGIRSKSLRNAIPFPKCQQDVGAILKDKILVGHALRNDLQALMLTHPKPMIRDTTKYRPYMR-RKVNGTKLLPKALRHLAQEVLDKTIQTGEH 218
BLAST of mRNA_H-paniculata_contig25323.6893.1 vs. uniprot
Match: F0Y7X0_AURAN (RNA exonuclease 4 (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y7X0_AURAN) HSP 1 Score: 123 bits (308), Expect = 2.040e-33 Identity = 65/113 (57.52%), Postives = 78/113 (69.03%), Query Frame = 1
Query: 1 YDKHVVPNERVTDFRTFVSGVKAKDL--RSGVPLRQCQNEVAHILDGKVLVGHALHNDLKALLLSHPARMTRDTAKYRPYQKARGKTGGKLYAKSLKILALDHLDRTIQEGQH 333
YD+HV ERVTDFRT SGV+A+DL R VP +CQ VA +L+GKVLVGHALHNDLK LLL HP TRDTA + P +A G+ GK + L+ L +HL R IQEG+H
Sbjct: 38 YDRHVKVGERVTDFRTKYSGVRARDLKARDAVPFAECQRAVASLLEGKVLVGHALHNDLKVLLLPHPRTATRDTASWPPLMRANGR--GKRKPRKLRDLVSEHLGRAIQEGEH 148
BLAST of mRNA_H-paniculata_contig25323.6893.1 vs. uniprot
Match: A0A024UI79_9STRA (RNA exonuclease 4 n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UI79_9STRA) HSP 1 Score: 126 bits (317), Expect = 3.410e-33 Identity = 64/111 (57.66%), Postives = 82/111 (73.87%), Query Frame = 1
Query: 1 YDKHVVPNERVTDFRTFVSGVKAKDLRSGVPLRQCQNEVAHILDGKVLVGHALHNDLKALLLSHPARMTRDTAKYRPYQKARGKTGGKLYAKSLKILALDHLDRTIQEGQH 333
YD+HV P E+VTDFRT VSG+++K LR +P +CQ +VA IL K+LVGHA+ NDL+AL+L+HP M RDT KYRPY + R G KL K+L+ LAL+ L RTIQ G+H
Sbjct: 121 YDEHVKPLEKVTDFRTHVSGIRSKSLRKAIPFAKCQVDVAAILKDKILVGHAVRNDLQALMLTHPKPMLRDTTKYRPYMRRRV-NGTKLLPKALRHLALEVLGRTIQGGEH 230 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25323.6893.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig25323.6893.1 >prot_H-paniculata_contig25323.6893.1 ID=prot_H-paniculata_contig25323.6893.1|Name=mRNA_H-paniculata_contig25323.6893.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=111bp YDKHVVPNERVTDFRTFVSGVKAKDLRSGVPLRQCQNEVAHILDGKVLVGback to top mRNA from alignment at H-paniculata_contig25323:1045..2180- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig25323.6893.1 ID=mRNA_H-paniculata_contig25323.6893.1|Name=mRNA_H-paniculata_contig25323.6893.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1136bp|location=Sequence derived from alignment at H-paniculata_contig25323:1045..2180- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig25323:1045..2180- >mRNA_H-paniculata_contig25323.6893.1 ID=mRNA_H-paniculata_contig25323.6893.1|Name=mRNA_H-paniculata_contig25323.6893.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at H-paniculata_contig25323:1045..2180- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |