mRNA_H-paniculata_contig25323.6893.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig25323.6893.1
Unique NamemRNA_H-paniculata_contig25323.6893.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig25323.6893.1 vs. uniprot
Match: D8LAZ6_ECTSI (RNA exonuclease 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAZ6_ECTSI)

HSP 1 Score: 168 bits (425), Expect = 5.050e-48
Identity = 84/111 (75.68%), Postives = 91/111 (81.98%), Query Frame = 1
Query:    1 YDKHVVPNERVTDFRTFVSGVKAKDLRSGVPLRQCQNEVAHILDGKVLVGHALHNDLKALLLSHPARMTRDTAKYRPYQKARGKTGGKLYAKSLKILALDHLDRTIQEGQH 333
            YDKHV PNERVTDFRTFVSGVKA  L+ GV LRQCQ EVA IL  KVLVGHAL NDLKAL++SHP R TRDTA YRPYQKA GK GGKL  +SLK+L+ +HLDR IQ GQH
Sbjct:  306 YDKHVTPNERVTDFRTFVSGVKANHLKGGVRLRQCQEEVAAILKDKVLVGHALTNDLKALMMSHPPRSTRDTATYRPYQKAHGKAGGKLRPRSLKLLSQEHLDRPIQTGQH 416          
BLAST of mRNA_H-paniculata_contig25323.6893.1 vs. uniprot
Match: I2CRR5_NANGC (RNA exonuclease 4 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CRR5_NANGC)

HSP 1 Score: 134 bits (336), Expect = 1.240e-37
Identity = 64/111 (57.66%), Postives = 84/111 (75.68%), Query Frame = 1
Query:    1 YDKHVVPNERVTDFRTFVSGVKAKDLRSGVPLRQCQNEVAHILDGKVLVGHALHNDLKALLLSHPARMTRDTAKYRPYQKARGKTGGKLYAKSLKILALDHLDRTIQEGQH 333
            YD+HV P ER+TDFRT+VSGVKAK L++ + L++C  +VA ++ GK++VGHAL NDL+ L+L HP  M RDTA+YR Y ++ GK GGKL  + LK LALD L   IQEG+H
Sbjct:   17 YDEHVRPRERITDFRTWVSGVKAKHLKAALSLKECILQVADLVKGKIIVGHALKNDLQVLMLQHPVAMIRDTARYRAYMRSHGKEGGKLRPRRLKDLALDFLGMEIQEGKH 127          
BLAST of mRNA_H-paniculata_contig25323.6893.1 vs. uniprot
Match: A0A1V9YXD8_9STRA (RNA exonuclease 4 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YXD8_9STRA)

HSP 1 Score: 136 bits (343), Expect = 2.930e-37
Identity = 68/111 (61.26%), Postives = 83/111 (74.77%), Query Frame = 1
Query:    1 YDKHVVPNERVTDFRTFVSGVKAKDLRSGVPLRQCQNEVAHILDGKVLVGHALHNDLKALLLSHPARMTRDTAKYRPYQKARGKTGGKLYAKSLKILALDHLDRTIQEGQH 333
            YDKHV P ERVTDFRT VSG+++K LR  +P  QCQ EVA I + K+LVGHAL ND++AL+L+HP  M RDT KYRPY + R   G KL+ KSLK LAL+ L +TIQ G+H
Sbjct:   98 YDKHVKPMERVTDFRTHVSGIRSKHLRDAIPFTQCQQEVAEIFEDKILVGHALRNDMQALMLTHPKGMIRDTTKYRPYMR-RKVNGTKLFPKSLKNLALEVLKKTIQTGEH 207          
BLAST of mRNA_H-paniculata_contig25323.6893.1 vs. uniprot
Match: A0A067BGR3_SAPPC (RNA exonuclease 4 (Fragment) n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BGR3_SAPPC)

HSP 1 Score: 132 bits (333), Expect = 1.660e-36
Identity = 65/111 (58.56%), Postives = 83/111 (74.77%), Query Frame = 1
Query:    1 YDKHVVPNERVTDFRTFVSGVKAKDLRSGVPLRQCQNEVAHILDGKVLVGHALHNDLKALLLSHPARMTRDTAKYRPYQKARGKTGGKLYAKSLKILALDHLDRTIQEGQH 333
            YD+HV P ERVTDFRT VSG++AK LR  +P  QCQ +VA I DGK++VGHA+ ND++AL+L+HP  + RDT KYRPY + R   G KLY K+LK LA + L +TIQ G+H
Sbjct:  105 YDEHVKPLERVTDFRTHVSGIRAKSLRDALPFEQCQKDVAAIFDGKIVVGHAIRNDMQALMLTHPKGLIRDTTKYRPYMR-RKVNGTKLYPKALKHLAEEVLHKTIQTGEH 214          
BLAST of mRNA_H-paniculata_contig25323.6893.1 vs. uniprot
Match: W7U6T2_9STRA (RNA exonuclease 4 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U6T2_9STRA)

HSP 1 Score: 134 bits (336), Expect = 2.710e-36
Identity = 64/111 (57.66%), Postives = 84/111 (75.68%), Query Frame = 1
Query:    1 YDKHVVPNERVTDFRTFVSGVKAKDLRSGVPLRQCQNEVAHILDGKVLVGHALHNDLKALLLSHPARMTRDTAKYRPYQKARGKTGGKLYAKSLKILALDHLDRTIQEGQH 333
            YD+HV P ER+TDFRT+VSGVKAK L++ + L++C  +VA ++ GK++VGHAL NDL+ L+L HP  M RDTA+YR Y ++ GK GGKL  + LK LALD L   IQEG+H
Sbjct:  135 YDEHVRPRERITDFRTWVSGVKAKHLKAALSLKECILQVADLVKGKIIVGHALKNDLQVLMLQHPVAMIRDTARYRAYMRSHGKEGGKLRPRRLKDLALDFLGMEIQEGKH 245          
BLAST of mRNA_H-paniculata_contig25323.6893.1 vs. uniprot
Match: T0Q8K7_SAPDV (RNA exonuclease 4 n=2 Tax=Saprolegnia TaxID=4769 RepID=T0Q8K7_SAPDV)

HSP 1 Score: 132 bits (331), Expect = 2.070e-35
Identity = 65/111 (58.56%), Postives = 82/111 (73.87%), Query Frame = 1
Query:    1 YDKHVVPNERVTDFRTFVSGVKAKDLRSGVPLRQCQNEVAHILDGKVLVGHALHNDLKALLLSHPARMTRDTAKYRPYQKARGKTGGKLYAKSLKILALDHLDRTIQEGQH 333
            YD+HV P ERVTDFRT VSG++AK LR  +P  QCQ +VA I DGK++VGHA+ ND++AL+L+HP    RDT KYRPY + R   G KLY K+LK LA + L +TIQ G+H
Sbjct:  104 YDEHVKPLERVTDFRTHVSGIRAKSLRDALPFEQCQKDVAAIFDGKIVVGHAIRNDMQALMLTHPKGQIRDTTKYRPYMR-RKVNGTKLYPKALKHLAEEVLHKTIQTGEH 213          
BLAST of mRNA_H-paniculata_contig25323.6893.1 vs. uniprot
Match: A0A485LPN0_9STRA (RNA exonuclease 4 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LPN0_9STRA)

HSP 1 Score: 129 bits (323), Expect = 5.710e-34
Identity = 62/111 (55.86%), Postives = 83/111 (74.77%), Query Frame = 1
Query:    1 YDKHVVPNERVTDFRTFVSGVKAKDLRSGVPLRQCQNEVAHILDGKVLVGHALHNDLKALLLSHPARMTRDTAKYRPYQKARGKTGGKLYAKSLKILALDHLDRTIQEGQH 333
            YD+HV P E+VTDFRT VSG+++K LR+ +P  +CQN+V  +L  K+LVGHA+ NDL+AL+L+HP  M RDT KYRPY + R   G KL  K+L+ LA + LD+TIQ G+H
Sbjct:  126 YDEHVKPLEKVTDFRTHVSGIRSKSLRNAIPFAKCQNDVGELLKDKILVGHAVRNDLQALMLTHPKPMLRDTTKYRPYMRRR-MNGTKLLPKALRHLAQEVLDKTIQTGEH 235          
BLAST of mRNA_H-paniculata_contig25323.6893.1 vs. uniprot
Match: A0A6G0X6W8_9STRA (RNA exonuclease 4 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X6W8_9STRA)

HSP 1 Score: 127 bits (318), Expect = 1.850e-33
Identity = 63/111 (56.76%), Postives = 82/111 (73.87%), Query Frame = 1
Query:    1 YDKHVVPNERVTDFRTFVSGVKAKDLRSGVPLRQCQNEVAHILDGKVLVGHALHNDLKALLLSHPARMTRDTAKYRPYQKARGKTGGKLYAKSLKILALDHLDRTIQEGQH 333
            YD+HV P E+VTDFRT VSG+++K LR+ +P  +CQ +V  IL  K+LVGHAL NDL+AL+L+HP  M RDT KYRPY + R   G KL  K+L+ LA + LD+TIQ G+H
Sbjct:  109 YDEHVKPMEKVTDFRTHVSGIRSKSLRNAIPFPKCQQDVGAILKDKILVGHALRNDLQALMLTHPKPMIRDTTKYRPYMR-RKVNGTKLLPKALRHLAQEVLDKTIQTGEH 218          
BLAST of mRNA_H-paniculata_contig25323.6893.1 vs. uniprot
Match: F0Y7X0_AURAN (RNA exonuclease 4 (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y7X0_AURAN)

HSP 1 Score: 123 bits (308), Expect = 2.040e-33
Identity = 65/113 (57.52%), Postives = 78/113 (69.03%), Query Frame = 1
Query:    1 YDKHVVPNERVTDFRTFVSGVKAKDL--RSGVPLRQCQNEVAHILDGKVLVGHALHNDLKALLLSHPARMTRDTAKYRPYQKARGKTGGKLYAKSLKILALDHLDRTIQEGQH 333
            YD+HV   ERVTDFRT  SGV+A+DL  R  VP  +CQ  VA +L+GKVLVGHALHNDLK LLL HP   TRDTA + P  +A G+  GK   + L+ L  +HL R IQEG+H
Sbjct:   38 YDRHVKVGERVTDFRTKYSGVRARDLKARDAVPFAECQRAVASLLEGKVLVGHALHNDLKVLLLPHPRTATRDTASWPPLMRANGR--GKRKPRKLRDLVSEHLGRAIQEGEH 148          
BLAST of mRNA_H-paniculata_contig25323.6893.1 vs. uniprot
Match: A0A024UI79_9STRA (RNA exonuclease 4 n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UI79_9STRA)

HSP 1 Score: 126 bits (317), Expect = 3.410e-33
Identity = 64/111 (57.66%), Postives = 82/111 (73.87%), Query Frame = 1
Query:    1 YDKHVVPNERVTDFRTFVSGVKAKDLRSGVPLRQCQNEVAHILDGKVLVGHALHNDLKALLLSHPARMTRDTAKYRPYQKARGKTGGKLYAKSLKILALDHLDRTIQEGQH 333
            YD+HV P E+VTDFRT VSG+++K LR  +P  +CQ +VA IL  K+LVGHA+ NDL+AL+L+HP  M RDT KYRPY + R   G KL  K+L+ LAL+ L RTIQ G+H
Sbjct:  121 YDEHVKPLEKVTDFRTHVSGIRSKSLRKAIPFAKCQVDVAAILKDKILVGHAVRNDLQALMLTHPKPMLRDTTKYRPYMRRRV-NGTKLLPKALRHLALEVLGRTIQGGEH 230          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25323.6893.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LAZ6_ECTSI5.050e-4875.68RNA exonuclease 4 n=1 Tax=Ectocarpus siliculosus T... [more]
I2CRR5_NANGC1.240e-3757.66RNA exonuclease 4 (Fragment) n=1 Tax=Nannochlorops... [more]
A0A1V9YXD8_9STRA2.930e-3761.26RNA exonuclease 4 n=1 Tax=Thraustotheca clavata Ta... [more]
A0A067BGR3_SAPPC1.660e-3658.56RNA exonuclease 4 (Fragment) n=1 Tax=Saprolegnia p... [more]
W7U6T2_9STRA2.710e-3657.66RNA exonuclease 4 n=2 Tax=Monodopsidaceae TaxID=42... [more]
T0Q8K7_SAPDV2.070e-3558.56RNA exonuclease 4 n=2 Tax=Saprolegnia TaxID=4769 R... [more]
A0A485LPN0_9STRA5.710e-3455.86RNA exonuclease 4 n=1 Tax=Aphanomyces stellatus Ta... [more]
A0A6G0X6W8_9STRA1.850e-3356.76RNA exonuclease 4 n=1 Tax=Aphanomyces euteiches Ta... [more]
F0Y7X0_AURAN2.040e-3357.52RNA exonuclease 4 (Fragment) n=1 Tax=Aureococcus a... [more]
A0A024UI79_9STRA3.410e-3357.66RNA exonuclease 4 n=2 Tax=Aphanomyces invadans Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25323contigH-paniculata_contig25323:1045..2180 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score169.1
Seed ortholog evalue1.2e-39
Seed eggNOG ortholog2880.D8LAZ6
KEGG koko:K18327
Hectar predicted targeting categoryother localisation
EggNOG free text desc.exonuclease activity
EggNOG OGsCOG0847@1,KOG2249@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009
Exons2
Model size333
Cds size333
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929746.4132602-CDS-H-paniculata_contig25323:1044..12031622929746.4132602-CDS-H-paniculata_contig25323:1044..1203Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25323 1045..1203 -
1691480993.4215453-CDS-H-paniculata_contig25323:1044..12031691480993.4215453-CDS-H-paniculata_contig25323:1044..1203Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25323 1045..1203 -
1622929746.425168-CDS-H-paniculata_contig25323:2006..21801622929746.425168-CDS-H-paniculata_contig25323:2006..2180Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25323 2007..2180 -
1691480993.4306276-CDS-H-paniculata_contig25323:2006..21801691480993.4306276-CDS-H-paniculata_contig25323:2006..2180Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25323 2007..2180 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25323.6893.1prot_H-paniculata_contig25323.6893.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig25323 1045..2180 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig25323.6893.1

>prot_H-paniculata_contig25323.6893.1 ID=prot_H-paniculata_contig25323.6893.1|Name=mRNA_H-paniculata_contig25323.6893.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=111bp
YDKHVVPNERVTDFRTFVSGVKAKDLRSGVPLRQCQNEVAHILDGKVLVG
HALHNDLKALLLSHPARMTRDTAKYRPYQKARGKTGGKLYAKSLKILALD
HLDRTIQEGQH
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mRNA from alignment at H-paniculata_contig25323:1045..2180-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig25323.6893.1 ID=mRNA_H-paniculata_contig25323.6893.1|Name=mRNA_H-paniculata_contig25323.6893.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1136bp|location=Sequence derived from alignment at H-paniculata_contig25323:1045..2180- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATGACAAACACGTGGTTCCGAATGAACGCGTGACGGACTTCCGTACATT TGTGAGTGGCGTGAAGGCAAAAGATCTCAGGAGCGGCGTGCCGCTGAGGC AGTGCCAGAACGAGGTGGCGCATATTCTTGACGGGAAAGTGCTCGTGGGA CATGCCTTGCACAACGACCTTAAGGTACCGAGTTTAGCGTCAGTACCGTA GTGTATAGGGTATATCGTCCCATAACAATGAACAGTTTTCAAGCTTCGTT TTATCGAAAGCGGCGGTGCTGGTGACACCGAGAGTTGTGCCGTTAGGGAG ACCTTGTCTAGTTCTGTCGGTAGACGTGCTCTTTCGGCAGTATGAGGCTA CGTCTCTAGACAAAATCGGGTTTTGAAAACCAGGGTCCAATTGTACTGTG CAAGACACACTGAGTTAGAAGAACGCAGCTGCAAGCGTAAGTTTTACCTT TGCGGAATGACGTAGTATGTTCTTTTTTCACTTGACAATTGACGTTGTGC AGATGATATACAGTAATGGTGCCGCGAAGGTGGAATGTATACCATGCTTG GTTTTGAAAGTCGCTTTCGTCTTGACCTTACCCACTACTTTTTATGAAAA AAGTAACAGGAATAATTTTCTTTAGGTTGCAGCCGTTCCACAGCTTGATA GCGGTTAGGAAGATGAGGAAATAACCGTTTCCCCTCATTTTATGCGCTAT AACCAACCACCTCAAGGTCTGCTCGAACTACGGGAGCATGCAAATGTTAA TCAGAAGTACCACCTCTATTTGCCTTACTAGCGGTGCCGCACGCACCGTT CTACACTGTGTTCTTCATGACATGTATTCATCCTCCCGAGTTTTAGTCAA ATAACTGGGCATTATACACAAACCATCTGATGTATCTGATTCGCATCTAA CGCCTTCGAGTCAATGCTAATTGCCACCGCACTCACCCTCTCCCTTTCGA ACGTCCGCCTTCAACCCGTTGCTTTAGGCATTGCTACTGTCCCACCCCGC ACGAATGACTCGAGACACGGCTAAATACCGACCATACCAGAAGGCGCGCG GAAAGACTGGCGGCAAGCTGTATGCAAAGTCTCTCAAGATTCTCGCGCTG GACCACCTCGACCGCACTATTCAGGAGGGACAACAC
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Coding sequence (CDS) from alignment at H-paniculata_contig25323:1045..2180-

>mRNA_H-paniculata_contig25323.6893.1 ID=mRNA_H-paniculata_contig25323.6893.1|Name=mRNA_H-paniculata_contig25323.6893.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at H-paniculata_contig25323:1045..2180- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATGACAAACACGTGGTTCCGAATGAACGCGTGACGGACTTCCGTACATT
TGTGAGTGGCGTGAAGGCAAAAGATCTCAGGAGCGGCGTGCCGCTGAGGC
AGTGCCAGAACGAGGTGGCGCATATTCTTGACGGGAAAGTGCTCGTGGGA
CATGCCTTGCACAACGACCTTAAGTATGACAAACACGTGGTTCCGAATGA
ACGCGTGACGGACTTCCGTACATTTGTGAGTGGCGTGAAGGCAAAAGATC
TCAGGAGCGGCGTGCCGCTGAGGCAGTGCCAGAACGAGGTGGCGCATATT
CTTGACGGGAAAGTGCTCGTGGGACATGCCTTGCACAACGACCTTAAGGC
ATTGCTACTGTCCCACCCCGCACGAATGACTCGAGACACGGCTAAATACC
GACCATACCAGAAGGCGCGCGGAAAGACTGGCGGCAAGCTGTATGCAAAG
TCTCTCAAGATTCTCGCGCTGGACCACCTCGACCGCACTATTCAGGAGGG
ACAACACGCATTGCTACTGTCCCACCCCGCACGAATGACTCGAGACACGG
CTAAATACCGACCATACCAGAAGGCGCGCGGAAAGACTGGCGGCAAGCTG
TATGCAAAGTCTCTCAAGATTCTCGCGCTGGACCACCTCGACCGCACTAT
TCAGGAGGGACAACAC
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