prot_H-paniculata_contig25317.6890.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig25317.6890.1
Unique Nameprot_H-paniculata_contig25317.6890.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length156
Homology
BLAST of mRNA_H-paniculata_contig25317.6890.1 vs. uniprot
Match: A0A151RDA4_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RDA4_CAJCA)

HSP 1 Score: 110 bits (276), Expect = 1.180e-27
Identity = 50/113 (44.25%), Postives = 72/113 (63.72%), Query Frame = 0
Query:    1 MAKANMITANMSHRYWGEAVRSAVYYLNRAPTRSHNGGTPYEKWHGETPKFDHLRVFGCTVYVMFQSQQRRKLDDKAWTGVFLGYDADSPSYHIYNPENKSVQLSRKVRYDEE 113
            MA++ + +  +   +W EAV  AVY  NR+PTRS +G TP E W G  P   HLRVFG   +V    ++R KL+DK+   +F+GYDA+S  Y +YNP++K   +S+ V +DEE
Sbjct:    1 MARSMLKSKKLPKEFWAEAVACAVYLTNRSPTRSVSGKTPQEAWSGRKPGISHLRVFGSIAHVHVPDEKRSKLNDKSEKYIFIGYDANSKGYKLYNPDSKKTIISQNVMFDEE 113          
BLAST of mRNA_H-paniculata_contig25317.6890.1 vs. uniprot
Match: A0A1J3DPC7_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3DPC7_NOCCA)

HSP 1 Score: 110 bits (275), Expect = 1.990e-27
Identity = 52/113 (46.02%), Postives = 69/113 (61.06%), Query Frame = 0
Query:    1 MAKANMITANMSHRYWGEAVRSAVYYLNRAPTRSHNGGTPYEKWHGETPKFDHLRVFGCTVYVMFQSQQRRKLDDKAWTGVFLGYDADSPSYHIYNPENKSVQLSRKVRYDEE 113
            MA++ + +  +    W EAV  AVY  NR+PTRS +G TP E W G  P   HLRVFG   +     ++R KLDDK+   +F+GYDA+S  Y +YNPE K   +SR V +DEE
Sbjct:   39 MARSMLKSKKLPKELWAEAVACAVYLSNRSPTRSVSGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRSKLDDKSEKYIFIGYDANSKGYKLYNPETKKTIISRNVIFDEE 151          
BLAST of mRNA_H-paniculata_contig25317.6890.1 vs. uniprot
Match: Q60DG5_ORYSJ (Putative polyprotein n=3 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q60DG5_ORYSJ)

HSP 1 Score: 114 bits (286), Expect = 1.230e-26
Identity = 52/111 (46.85%), Postives = 73/111 (65.77%), Query Frame = 0
Query:    2 AKANMITANMSHRYWGEAVRSAVYYLNRAPTRSHNGGTPYEKWHGETPKFDHLRVFGCTVYVMFQSQQRRKLDDKAWTGVFLGYDADSPSYHIYNPENKSVQLSRKVRYDE 112
            A++ +  A M  ++WGEAV +AVY LNR+PT+S +G TPYE WHG  P  +HL+VFGC  YV       RKLDD+    VF+GY+  S +Y +Y+P ++   +SR V +DE
Sbjct:  354 ARSMLKAAGMPAQFWGEAVVAAVYLLNRSPTKSLDGVTPYEAWHGRRPSVEHLKVFGCVGYVKTVKPNLRKLDDRGTRMVFIGYEQGSKAYRMYDPVSRRFYVSRDVVFDE 464          
BLAST of mRNA_H-paniculata_contig25317.6890.1 vs. uniprot
Match: A0A2I0WJT9_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0WJT9_9ASPA)

HSP 1 Score: 108 bits (271), Expect = 2.050e-26
Identity = 47/113 (41.59%), Postives = 71/113 (62.83%), Query Frame = 0
Query:    1 MAKANMITANMSHRYWGEAVRSAVYYLNRAPTRSHNGGTPYEKWHGETPKFDHLRVFGCTVYVMFQSQQRRKLDDKAWTGVFLGYDADSPSYHIYNPENKSVQLSRKVRYDEE 113
            MA++ +I  ++  ++W EAV +AVY LNR PT++    TP E W G+ P  DH R+FGC  YV    Q+R KL++K   G+FLGY + S  Y  +N + + +  SR V++DE+
Sbjct:  104 MARSMLIAKDIPKKFWAEAVNTAVYVLNRCPTKAVKDITPIEAWSGDKPSVDHFRIFGCLCYVHIPKQKRHKLEEKPDKGIFLGYSSQSKGYIFFNLKTQQLVTSRDVKFDED 216          
BLAST of mRNA_H-paniculata_contig25317.6890.1 vs. uniprot
Match: A0A4Y2LAF7_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2LAF7_ARAVE)

HSP 1 Score: 110 bits (276), Expect = 3.900e-26
Identity = 56/126 (44.44%), Postives = 73/126 (57.94%), Query Frame = 0
Query:    1 MAKANMITANMSHRYWGEAVRSAVYYLNRAPTRSHNGGTPYEKWHGETPKFDHLRVFGCTVYVMFQSQQRRKLDDKAWTGVFLGYDADSPSYHIYNPENKSVQLSRKVRYDEEDFVTGHRGQQEHE 126
            MA+  +  AN+S R+W EA  +A Y  NR PT+     TPY  W    P   H+RVFGC  Y   Q Q+RRKLDDKA  G+FLGYD  S  Y IY  +NK + +SR V+++E       R  +EH+
Sbjct:  121 MARCLLSDANLSQRFWAEAAMTATYLQNRLPTKPKRK-TPYVLWANRKPDLSHIRVFGCKAYACIQKQKRRKLDDKAVEGIFLGYDYRSKGYRIYLGDNK-IMISRTVKFNENPLPYAKREAKEHQ 244          
BLAST of mRNA_H-paniculata_contig25317.6890.1 vs. uniprot
Match: A0A1R3HQR7_COCAP (Integrase catalytic domain-containing protein n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3HQR7_COCAP)

HSP 1 Score: 113 bits (282), Expect = 4.270e-26
Identity = 51/112 (45.54%), Postives = 67/112 (59.82%), Query Frame = 0
Query:    1 MAKANMITANMSHRYWGEAVRSAVYYLNRAPTRSHNGGTPYEKWHGETPKFDHLRVFGCTVYVMFQSQQRRKLDDKAWTGVFLGYDADSPSYHIYNPENKSVQLSRKVRYDE 112
            MA+  +    +  ++W EAV +AVY LNR PT++    TPYE W G  P   HL+VFGC  Y    + +R KLD+KA  GVF+GY  +   Y IYNP    V LSR V++DE
Sbjct:  406 MARCLLFEKKLPKKFWAEAVNTAVYLLNRLPTKALKNLTPYEGWSGAKPSVTHLKVFGCVCYTWIPNVKRGKLDEKAQIGVFVGYSIEVKGYRIYNPTTNKVYLSRDVKFDE 517          
BLAST of mRNA_H-paniculata_contig25317.6890.1 vs. uniprot
Match: A0A446QWW7_TRITD (Uncharacterized protein n=1 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446QWW7_TRITD)

HSP 1 Score: 112 bits (281), Expect = 5.910e-26
Identity = 53/112 (47.32%), Postives = 70/112 (62.50%), Query Frame = 0
Query:    1 MAKANMITANMSHRYWGEAVRSAVYYLNRAPTRSHNGGTPYEKWHGETPKFDHLRVFGCTVYVMFQSQQRRKLDDKAWTGVFLGYDADSPSYHIYNPENKSVQLSRKVRYDE 112
            MA++ M    M   +WGEAV +AVY LNRA TRS +G TPYE WHG  P+  HLRVFGC  +V       +KLDD++   V +GY+  S +Y +Y+P    V +SR V +DE
Sbjct:  693 MARSMMKAKGMPDYFWGEAVTTAVYLLNRAFTRSVDGATPYEAWHGRKPEVSHLRVFGCVAHVKSARPLLKKLDDRSTPMVHIGYEPGSKAYRVYDPATHRVHVSRDVVFDE 804          
BLAST of mRNA_H-paniculata_contig25317.6890.1 vs. uniprot
Match: A0A151TGQ2_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151TGQ2_CAJCA)

HSP 1 Score: 112 bits (280), Expect = 7.830e-26
Identity = 51/113 (45.13%), Postives = 72/113 (63.72%), Query Frame = 0
Query:    1 MAKANMITANMSHRYWGEAVRSAVYYLNRAPTRSHNGGTPYEKWHGETPKFDHLRVFGCTVYVMFQSQQRRKLDDKAWTGVFLGYDADSPSYHIYNPENKSVQLSRKVRYDEE 113
            MA++ + +  +   +W EAV  AVY  NR+PTRS +G TP E W G  P   HLRVFG   +V    ++R KLDDK+   +F+GYDA+S  Y +YNP+++   +SR V +DEE
Sbjct:  573 MARSMLKSKKLPKEFWAEAVACAVYLTNRSPTRSVSGKTPQEAWSGRKPGISHLRVFGSIAHVHVPDEKRSKLDDKSEKYIFIGYDANSKGYKLYNPDSRKTIISRNVVFDEE 685          
BLAST of mRNA_H-paniculata_contig25317.6890.1 vs. uniprot
Match: A0A151RPT4_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=5 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RPT4_CAJCA)

HSP 1 Score: 112 bits (280), Expect = 8.010e-26
Identity = 51/113 (45.13%), Postives = 72/113 (63.72%), Query Frame = 0
Query:    1 MAKANMITANMSHRYWGEAVRSAVYYLNRAPTRSHNGGTPYEKWHGETPKFDHLRVFGCTVYVMFQSQQRRKLDDKAWTGVFLGYDADSPSYHIYNPENKSVQLSRKVRYDEE 113
            MA++ + +  +   +W EAV  AVY  NR+PTRS +G TP E W G  P   HLRVFG   +V    ++R KLDDK+   +F+GYDA+S  Y +YNP+++   +SR V +DEE
Sbjct:  639 MARSMLKSKKLPKEFWAEAVACAVYLTNRSPTRSVSGKTPQEAWSGRKPGISHLRVFGSIAHVHVPDEKRSKLDDKSEKYIFIGYDANSKGYKLYNPDSRKTIISRNVVFDEE 751          
BLAST of mRNA_H-paniculata_contig25317.6890.1 vs. uniprot
Match: I1NXJ5_ORYGL (Integrase catalytic domain-containing protein n=1 Tax=Oryza glaberrima TaxID=4538 RepID=I1NXJ5_ORYGL)

HSP 1 Score: 107 bits (268), Expect = 9.410e-26
Identity = 52/112 (46.43%), Postives = 71/112 (63.39%), Query Frame = 0
Query:    1 MAKANMITANMSHRYWGEAVRSAVYYLNRAPTRSHNGGTPYEKWHGETPKFDHLRVFGCTVYVMFQSQQRRKLDDKAWTGVFLGYDADSPSYHIYNPENKSVQLSRKVRYDE 112
            MA+A +    M   +WGEAV +AVY LNR+PT++ +G TPYE WHG  P   HLRVFGC  +   +     KLDD++  GV +GY   S +YHI +PE + V+ +R V +DE
Sbjct:  131 MARALLKQRRMPAIFWGEAVVTAVYILNRSPTKALDGRTPYEAWHGRKPAVSHLRVFGCLAFAK-ELGHIGKLDDRSTPGVLIGYAEGSKTYHILDPETQRVRTARDVVFDE 241          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25317.6890.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A151RDA4_CAJCA1.180e-2744.25Retrovirus-related Pol polyprotein from transposon... [more]
A0A1J3DPC7_NOCCA1.990e-2746.02Retrovirus-related Pol polyprotein from transposon... [more]
Q60DG5_ORYSJ1.230e-2646.85Putative polyprotein n=3 Tax=Oryza sativa subsp. j... [more]
A0A2I0WJT9_9ASPA2.050e-2641.59Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y2LAF7_ARAVE3.900e-2644.44Retrovirus-related Pol polyprotein from transposon... [more]
A0A1R3HQR7_COCAP4.270e-2645.54Integrase catalytic domain-containing protein n=1 ... [more]
A0A446QWW7_TRITD5.910e-2647.32Uncharacterized protein n=1 Tax=Triticum turgidum ... [more]
A0A151TGQ2_CAJCA7.830e-2645.13Retrovirus-related Pol polyprotein from transposon... [more]
A0A151RPT4_CAJCA8.010e-2645.13Retrovirus-related Pol polyprotein from transposon... [more]
I1NXJ5_ORYGL9.410e-2646.43Integrase catalytic domain-containing protein n=1 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 9..119
NoneNo IPR availablePANTHERPTHR11439:SF265coord: 9..119
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 10..57

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25317contigH-paniculata_contig25317:2043..2510 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25317.6890.1mRNA_H-paniculata_contig25317.6890.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig25317 2043..2794 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig25317.6890.1 ID=prot_H-paniculata_contig25317.6890.1|Name=mRNA_H-paniculata_contig25317.6890.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=156bp
MAKANMITANMSHRYWGEAVRSAVYYLNRAPTRSHNGGTPYEKWHGETPK
FDHLRVFGCTVYVMFQSQQRRKLDDKAWTGVFLGYDADSPSYHIYNPENK
SVQLSRKVRYDEEDFVTGHRGQQEHEGTRNMEVFFQQHQSCQRSFDPLPE
ASKQA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039537Retrotran_Ty1/copia-like
IPR012337RNaseH-like_sf