mRNA_H-paniculata_contig25317.6890.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig25317.6890.1 vs. uniprot
Match: A0A151RDA4_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RDA4_CAJCA) HSP 1 Score: 110 bits (276), Expect = 2.020e-26 Identity = 50/113 (44.25%), Postives = 72/113 (63.72%), Query Frame = 1
Query: 1 MAKANMITANMSHRYWGEAVRSAVYYLNRAPTRSHNGGTPYEKWHGETPKFDHLRVFGCTVYVMFQSQQRRKLDDKAWTGVFLGYDADSPSYHIYNPENKSVQLSRKVRYDEE 339
MA++ + + + +W EAV AVY NR+PTRS +G TP E W G P HLRVFG +V ++R KL+DK+ +F+GYDA+S Y +YNP++K +S+ V +DEE
Sbjct: 1 MARSMLKSKKLPKEFWAEAVACAVYLTNRSPTRSVSGKTPQEAWSGRKPGISHLRVFGSIAHVHVPDEKRSKLNDKSEKYIFIGYDANSKGYKLYNPDSKKTIISQNVMFDEE 113
BLAST of mRNA_H-paniculata_contig25317.6890.1 vs. uniprot
Match: A0A1J3DPC7_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3DPC7_NOCCA) HSP 1 Score: 110 bits (275), Expect = 3.390e-26 Identity = 52/113 (46.02%), Postives = 69/113 (61.06%), Query Frame = 1
Query: 1 MAKANMITANMSHRYWGEAVRSAVYYLNRAPTRSHNGGTPYEKWHGETPKFDHLRVFGCTVYVMFQSQQRRKLDDKAWTGVFLGYDADSPSYHIYNPENKSVQLSRKVRYDEE 339
MA++ + + + W EAV AVY NR+PTRS +G TP E W G P HLRVFG + ++R KLDDK+ +F+GYDA+S Y +YNPE K +SR V +DEE
Sbjct: 39 MARSMLKSKKLPKELWAEAVACAVYLSNRSPTRSVSGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRSKLDDKSEKYIFIGYDANSKGYKLYNPETKKTIISRNVIFDEE 151
BLAST of mRNA_H-paniculata_contig25317.6890.1 vs. uniprot
Match: Q60DG5_ORYSJ (Putative polyprotein n=3 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q60DG5_ORYSJ) HSP 1 Score: 114 bits (286), Expect = 2.480e-25 Identity = 52/111 (46.85%), Postives = 73/111 (65.77%), Query Frame = 1
Query: 4 AKANMITANMSHRYWGEAVRSAVYYLNRAPTRSHNGGTPYEKWHGETPKFDHLRVFGCTVYVMFQSQQRRKLDDKAWTGVFLGYDADSPSYHIYNPENKSVQLSRKVRYDE 336
A++ + A M ++WGEAV +AVY LNR+PT+S +G TPYE WHG P +HL+VFGC YV RKLDD+ VF+GY+ S +Y +Y+P ++ +SR V +DE
Sbjct: 354 ARSMLKAAGMPAQFWGEAVVAAVYLLNRSPTKSLDGVTPYEAWHGRRPSVEHLKVFGCVGYVKTVKPNLRKLDDRGTRMVFIGYEQGSKAYRMYDPVSRRFYVSRDVVFDE 464
BLAST of mRNA_H-paniculata_contig25317.6890.1 vs. uniprot
Match: A0A2I0WJT9_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0WJT9_9ASPA) HSP 1 Score: 108 bits (271), Expect = 3.430e-25 Identity = 47/113 (41.59%), Postives = 71/113 (62.83%), Query Frame = 1
Query: 1 MAKANMITANMSHRYWGEAVRSAVYYLNRAPTRSHNGGTPYEKWHGETPKFDHLRVFGCTVYVMFQSQQRRKLDDKAWTGVFLGYDADSPSYHIYNPENKSVQLSRKVRYDEE 339
MA++ +I ++ ++W EAV +AVY LNR PT++ TP E W G+ P DH R+FGC YV Q+R KL++K G+FLGY + S Y +N + + + SR V++DE+
Sbjct: 104 MARSMLIAKDIPKKFWAEAVNTAVYVLNRCPTKAVKDITPIEAWSGDKPSVDHFRIFGCLCYVHIPKQKRHKLEEKPDKGIFLGYSSQSKGYIFFNLKTQQLVTSRDVKFDED 216
BLAST of mRNA_H-paniculata_contig25317.6890.1 vs. uniprot
Match: A0A4Y2LAF7_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2LAF7_ARAVE) HSP 1 Score: 110 bits (276), Expect = 6.740e-25 Identity = 56/126 (44.44%), Postives = 73/126 (57.94%), Query Frame = 1
Query: 1 MAKANMITANMSHRYWGEAVRSAVYYLNRAPTRSHNGGTPYEKWHGETPKFDHLRVFGCTVYVMFQSQQRRKLDDKAWTGVFLGYDADSPSYHIYNPENKSVQLSRKVRYDEEDFVTGHRGQQEHE 378
MA+ + AN+S R+W EA +A Y NR PT+ TPY W P H+RVFGC Y Q Q+RRKLDDKA G+FLGYD S Y IY +NK + +SR V+++E R +EH+
Sbjct: 121 MARCLLSDANLSQRFWAEAAMTATYLQNRLPTKPKRK-TPYVLWANRKPDLSHIRVFGCKAYACIQKQKRRKLDDKAVEGIFLGYDYRSKGYRIYLGDNK-IMISRTVKFNENPLPYAKREAKEHQ 244
BLAST of mRNA_H-paniculata_contig25317.6890.1 vs. uniprot
Match: A0A1R3HQR7_COCAP (Integrase catalytic domain-containing protein n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3HQR7_COCAP) HSP 1 Score: 113 bits (282), Expect = 8.540e-25 Identity = 51/112 (45.54%), Postives = 67/112 (59.82%), Query Frame = 1
Query: 1 MAKANMITANMSHRYWGEAVRSAVYYLNRAPTRSHNGGTPYEKWHGETPKFDHLRVFGCTVYVMFQSQQRRKLDDKAWTGVFLGYDADSPSYHIYNPENKSVQLSRKVRYDE 336
MA+ + + ++W EAV +AVY LNR PT++ TPYE W G P HL+VFGC Y + +R KLD+KA GVF+GY + Y IYNP V LSR V++DE
Sbjct: 406 MARCLLFEKKLPKKFWAEAVNTAVYLLNRLPTKALKNLTPYEGWSGAKPSVTHLKVFGCVCYTWIPNVKRGKLDEKAQIGVFVGYSIEVKGYRIYNPTTNKVYLSRDVKFDE 517
BLAST of mRNA_H-paniculata_contig25317.6890.1 vs. uniprot
Match: A0A446QWW7_TRITD (Uncharacterized protein n=1 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446QWW7_TRITD) HSP 1 Score: 112 bits (281), Expect = 1.200e-24 Identity = 53/112 (47.32%), Postives = 70/112 (62.50%), Query Frame = 1
Query: 1 MAKANMITANMSHRYWGEAVRSAVYYLNRAPTRSHNGGTPYEKWHGETPKFDHLRVFGCTVYVMFQSQQRRKLDDKAWTGVFLGYDADSPSYHIYNPENKSVQLSRKVRYDE 336
MA++ M M +WGEAV +AVY LNRA TRS +G TPYE WHG P+ HLRVFGC +V +KLDD++ V +GY+ S +Y +Y+P V +SR V +DE
Sbjct: 693 MARSMMKAKGMPDYFWGEAVTTAVYLLNRAFTRSVDGATPYEAWHGRKPEVSHLRVFGCVAHVKSARPLLKKLDDRSTPMVHIGYEPGSKAYRVYDPATHRVHVSRDVVFDE 804
BLAST of mRNA_H-paniculata_contig25317.6890.1 vs. uniprot
Match: A0A151TGQ2_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151TGQ2_CAJCA) HSP 1 Score: 112 bits (280), Expect = 1.540e-24 Identity = 51/113 (45.13%), Postives = 72/113 (63.72%), Query Frame = 1
Query: 1 MAKANMITANMSHRYWGEAVRSAVYYLNRAPTRSHNGGTPYEKWHGETPKFDHLRVFGCTVYVMFQSQQRRKLDDKAWTGVFLGYDADSPSYHIYNPENKSVQLSRKVRYDEE 339
MA++ + + + +W EAV AVY NR+PTRS +G TP E W G P HLRVFG +V ++R KLDDK+ +F+GYDA+S Y +YNP+++ +SR V +DEE
Sbjct: 573 MARSMLKSKKLPKEFWAEAVACAVYLTNRSPTRSVSGKTPQEAWSGRKPGISHLRVFGSIAHVHVPDEKRSKLDDKSEKYIFIGYDANSKGYKLYNPDSRKTIISRNVVFDEE 685
BLAST of mRNA_H-paniculata_contig25317.6890.1 vs. uniprot
Match: I1NXJ5_ORYGL (Integrase catalytic domain-containing protein n=1 Tax=Oryza glaberrima TaxID=4538 RepID=I1NXJ5_ORYGL) HSP 1 Score: 107 bits (268), Expect = 1.550e-24 Identity = 52/112 (46.43%), Postives = 71/112 (63.39%), Query Frame = 1
Query: 1 MAKANMITANMSHRYWGEAVRSAVYYLNRAPTRSHNGGTPYEKWHGETPKFDHLRVFGCTVYVMFQSQQRRKLDDKAWTGVFLGYDADSPSYHIYNPENKSVQLSRKVRYDE 336
MA+A + M +WGEAV +AVY LNR+PT++ +G TPYE WHG P HLRVFGC + + KLDD++ GV +GY S +YHI +PE + V+ +R V +DE
Sbjct: 131 MARALLKQRRMPAIFWGEAVVTAVYILNRSPTKALDGRTPYEAWHGRKPAVSHLRVFGCLAFAK-ELGHIGKLDDRSTPGVLIGYAEGSKTYHILDPETQRVRTARDVVFDE 241
BLAST of mRNA_H-paniculata_contig25317.6890.1 vs. uniprot
Match: A0A151RPT4_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=5 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RPT4_CAJCA) HSP 1 Score: 112 bits (280), Expect = 1.610e-24 Identity = 51/113 (45.13%), Postives = 72/113 (63.72%), Query Frame = 1
Query: 1 MAKANMITANMSHRYWGEAVRSAVYYLNRAPTRSHNGGTPYEKWHGETPKFDHLRVFGCTVYVMFQSQQRRKLDDKAWTGVFLGYDADSPSYHIYNPENKSVQLSRKVRYDEE 339
MA++ + + + +W EAV AVY NR+PTRS +G TP E W G P HLRVFG +V ++R KLDDK+ +F+GYDA+S Y +YNP+++ +SR V +DEE
Sbjct: 639 MARSMLKSKKLPKEFWAEAVACAVYLTNRSPTRSVSGKTPQEAWSGRKPGISHLRVFGSIAHVHVPDEKRSKLDDKSEKYIFIGYDANSKGYKLYNPDSRKTIISRNVVFDEE 751 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25317.6890.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig25317.6890.1 >prot_H-paniculata_contig25317.6890.1 ID=prot_H-paniculata_contig25317.6890.1|Name=mRNA_H-paniculata_contig25317.6890.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=156bp MAKANMITANMSHRYWGEAVRSAVYYLNRAPTRSHNGGTPYEKWHGETPKback to top mRNA from alignment at H-paniculata_contig25317:2043..2794+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig25317.6890.1 ID=mRNA_H-paniculata_contig25317.6890.1|Name=mRNA_H-paniculata_contig25317.6890.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=752bp|location=Sequence derived from alignment at H-paniculata_contig25317:2043..2794+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig25317:2043..2794+ >mRNA_H-paniculata_contig25317.6890.1 ID=mRNA_H-paniculata_contig25317.6890.1|Name=mRNA_H-paniculata_contig25317.6890.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=936bp|location=Sequence derived from alignment at H-paniculata_contig25317:2043..2794+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |