mRNA_H-paniculata_contig25317.6890.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig25317.6890.1
Unique NamemRNA_H-paniculata_contig25317.6890.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig25317.6890.1 vs. uniprot
Match: A0A151RDA4_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RDA4_CAJCA)

HSP 1 Score: 110 bits (276), Expect = 2.020e-26
Identity = 50/113 (44.25%), Postives = 72/113 (63.72%), Query Frame = 1
Query:    1 MAKANMITANMSHRYWGEAVRSAVYYLNRAPTRSHNGGTPYEKWHGETPKFDHLRVFGCTVYVMFQSQQRRKLDDKAWTGVFLGYDADSPSYHIYNPENKSVQLSRKVRYDEE 339
            MA++ + +  +   +W EAV  AVY  NR+PTRS +G TP E W G  P   HLRVFG   +V    ++R KL+DK+   +F+GYDA+S  Y +YNP++K   +S+ V +DEE
Sbjct:    1 MARSMLKSKKLPKEFWAEAVACAVYLTNRSPTRSVSGKTPQEAWSGRKPGISHLRVFGSIAHVHVPDEKRSKLNDKSEKYIFIGYDANSKGYKLYNPDSKKTIISQNVMFDEE 113          
BLAST of mRNA_H-paniculata_contig25317.6890.1 vs. uniprot
Match: A0A1J3DPC7_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3DPC7_NOCCA)

HSP 1 Score: 110 bits (275), Expect = 3.390e-26
Identity = 52/113 (46.02%), Postives = 69/113 (61.06%), Query Frame = 1
Query:    1 MAKANMITANMSHRYWGEAVRSAVYYLNRAPTRSHNGGTPYEKWHGETPKFDHLRVFGCTVYVMFQSQQRRKLDDKAWTGVFLGYDADSPSYHIYNPENKSVQLSRKVRYDEE 339
            MA++ + +  +    W EAV  AVY  NR+PTRS +G TP E W G  P   HLRVFG   +     ++R KLDDK+   +F+GYDA+S  Y +YNPE K   +SR V +DEE
Sbjct:   39 MARSMLKSKKLPKELWAEAVACAVYLSNRSPTRSVSGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRSKLDDKSEKYIFIGYDANSKGYKLYNPETKKTIISRNVIFDEE 151          
BLAST of mRNA_H-paniculata_contig25317.6890.1 vs. uniprot
Match: Q60DG5_ORYSJ (Putative polyprotein n=3 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q60DG5_ORYSJ)

HSP 1 Score: 114 bits (286), Expect = 2.480e-25
Identity = 52/111 (46.85%), Postives = 73/111 (65.77%), Query Frame = 1
Query:    4 AKANMITANMSHRYWGEAVRSAVYYLNRAPTRSHNGGTPYEKWHGETPKFDHLRVFGCTVYVMFQSQQRRKLDDKAWTGVFLGYDADSPSYHIYNPENKSVQLSRKVRYDE 336
            A++ +  A M  ++WGEAV +AVY LNR+PT+S +G TPYE WHG  P  +HL+VFGC  YV       RKLDD+    VF+GY+  S +Y +Y+P ++   +SR V +DE
Sbjct:  354 ARSMLKAAGMPAQFWGEAVVAAVYLLNRSPTKSLDGVTPYEAWHGRRPSVEHLKVFGCVGYVKTVKPNLRKLDDRGTRMVFIGYEQGSKAYRMYDPVSRRFYVSRDVVFDE 464          
BLAST of mRNA_H-paniculata_contig25317.6890.1 vs. uniprot
Match: A0A2I0WJT9_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0WJT9_9ASPA)

HSP 1 Score: 108 bits (271), Expect = 3.430e-25
Identity = 47/113 (41.59%), Postives = 71/113 (62.83%), Query Frame = 1
Query:    1 MAKANMITANMSHRYWGEAVRSAVYYLNRAPTRSHNGGTPYEKWHGETPKFDHLRVFGCTVYVMFQSQQRRKLDDKAWTGVFLGYDADSPSYHIYNPENKSVQLSRKVRYDEE 339
            MA++ +I  ++  ++W EAV +AVY LNR PT++    TP E W G+ P  DH R+FGC  YV    Q+R KL++K   G+FLGY + S  Y  +N + + +  SR V++DE+
Sbjct:  104 MARSMLIAKDIPKKFWAEAVNTAVYVLNRCPTKAVKDITPIEAWSGDKPSVDHFRIFGCLCYVHIPKQKRHKLEEKPDKGIFLGYSSQSKGYIFFNLKTQQLVTSRDVKFDED 216          
BLAST of mRNA_H-paniculata_contig25317.6890.1 vs. uniprot
Match: A0A4Y2LAF7_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2LAF7_ARAVE)

HSP 1 Score: 110 bits (276), Expect = 6.740e-25
Identity = 56/126 (44.44%), Postives = 73/126 (57.94%), Query Frame = 1
Query:    1 MAKANMITANMSHRYWGEAVRSAVYYLNRAPTRSHNGGTPYEKWHGETPKFDHLRVFGCTVYVMFQSQQRRKLDDKAWTGVFLGYDADSPSYHIYNPENKSVQLSRKVRYDEEDFVTGHRGQQEHE 378
            MA+  +  AN+S R+W EA  +A Y  NR PT+     TPY  W    P   H+RVFGC  Y   Q Q+RRKLDDKA  G+FLGYD  S  Y IY  +NK + +SR V+++E       R  +EH+
Sbjct:  121 MARCLLSDANLSQRFWAEAAMTATYLQNRLPTKPKRK-TPYVLWANRKPDLSHIRVFGCKAYACIQKQKRRKLDDKAVEGIFLGYDYRSKGYRIYLGDNK-IMISRTVKFNENPLPYAKREAKEHQ 244          
BLAST of mRNA_H-paniculata_contig25317.6890.1 vs. uniprot
Match: A0A1R3HQR7_COCAP (Integrase catalytic domain-containing protein n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3HQR7_COCAP)

HSP 1 Score: 113 bits (282), Expect = 8.540e-25
Identity = 51/112 (45.54%), Postives = 67/112 (59.82%), Query Frame = 1
Query:    1 MAKANMITANMSHRYWGEAVRSAVYYLNRAPTRSHNGGTPYEKWHGETPKFDHLRVFGCTVYVMFQSQQRRKLDDKAWTGVFLGYDADSPSYHIYNPENKSVQLSRKVRYDE 336
            MA+  +    +  ++W EAV +AVY LNR PT++    TPYE W G  P   HL+VFGC  Y    + +R KLD+KA  GVF+GY  +   Y IYNP    V LSR V++DE
Sbjct:  406 MARCLLFEKKLPKKFWAEAVNTAVYLLNRLPTKALKNLTPYEGWSGAKPSVTHLKVFGCVCYTWIPNVKRGKLDEKAQIGVFVGYSIEVKGYRIYNPTTNKVYLSRDVKFDE 517          
BLAST of mRNA_H-paniculata_contig25317.6890.1 vs. uniprot
Match: A0A446QWW7_TRITD (Uncharacterized protein n=1 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446QWW7_TRITD)

HSP 1 Score: 112 bits (281), Expect = 1.200e-24
Identity = 53/112 (47.32%), Postives = 70/112 (62.50%), Query Frame = 1
Query:    1 MAKANMITANMSHRYWGEAVRSAVYYLNRAPTRSHNGGTPYEKWHGETPKFDHLRVFGCTVYVMFQSQQRRKLDDKAWTGVFLGYDADSPSYHIYNPENKSVQLSRKVRYDE 336
            MA++ M    M   +WGEAV +AVY LNRA TRS +G TPYE WHG  P+  HLRVFGC  +V       +KLDD++   V +GY+  S +Y +Y+P    V +SR V +DE
Sbjct:  693 MARSMMKAKGMPDYFWGEAVTTAVYLLNRAFTRSVDGATPYEAWHGRKPEVSHLRVFGCVAHVKSARPLLKKLDDRSTPMVHIGYEPGSKAYRVYDPATHRVHVSRDVVFDE 804          
BLAST of mRNA_H-paniculata_contig25317.6890.1 vs. uniprot
Match: A0A151TGQ2_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151TGQ2_CAJCA)

HSP 1 Score: 112 bits (280), Expect = 1.540e-24
Identity = 51/113 (45.13%), Postives = 72/113 (63.72%), Query Frame = 1
Query:    1 MAKANMITANMSHRYWGEAVRSAVYYLNRAPTRSHNGGTPYEKWHGETPKFDHLRVFGCTVYVMFQSQQRRKLDDKAWTGVFLGYDADSPSYHIYNPENKSVQLSRKVRYDEE 339
            MA++ + +  +   +W EAV  AVY  NR+PTRS +G TP E W G  P   HLRVFG   +V    ++R KLDDK+   +F+GYDA+S  Y +YNP+++   +SR V +DEE
Sbjct:  573 MARSMLKSKKLPKEFWAEAVACAVYLTNRSPTRSVSGKTPQEAWSGRKPGISHLRVFGSIAHVHVPDEKRSKLDDKSEKYIFIGYDANSKGYKLYNPDSRKTIISRNVVFDEE 685          
BLAST of mRNA_H-paniculata_contig25317.6890.1 vs. uniprot
Match: I1NXJ5_ORYGL (Integrase catalytic domain-containing protein n=1 Tax=Oryza glaberrima TaxID=4538 RepID=I1NXJ5_ORYGL)

HSP 1 Score: 107 bits (268), Expect = 1.550e-24
Identity = 52/112 (46.43%), Postives = 71/112 (63.39%), Query Frame = 1
Query:    1 MAKANMITANMSHRYWGEAVRSAVYYLNRAPTRSHNGGTPYEKWHGETPKFDHLRVFGCTVYVMFQSQQRRKLDDKAWTGVFLGYDADSPSYHIYNPENKSVQLSRKVRYDE 336
            MA+A +    M   +WGEAV +AVY LNR+PT++ +G TPYE WHG  P   HLRVFGC  +   +     KLDD++  GV +GY   S +YHI +PE + V+ +R V +DE
Sbjct:  131 MARALLKQRRMPAIFWGEAVVTAVYILNRSPTKALDGRTPYEAWHGRKPAVSHLRVFGCLAFAK-ELGHIGKLDDRSTPGVLIGYAEGSKTYHILDPETQRVRTARDVVFDE 241          
BLAST of mRNA_H-paniculata_contig25317.6890.1 vs. uniprot
Match: A0A151RPT4_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=5 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RPT4_CAJCA)

HSP 1 Score: 112 bits (280), Expect = 1.610e-24
Identity = 51/113 (45.13%), Postives = 72/113 (63.72%), Query Frame = 1
Query:    1 MAKANMITANMSHRYWGEAVRSAVYYLNRAPTRSHNGGTPYEKWHGETPKFDHLRVFGCTVYVMFQSQQRRKLDDKAWTGVFLGYDADSPSYHIYNPENKSVQLSRKVRYDEE 339
            MA++ + +  +   +W EAV  AVY  NR+PTRS +G TP E W G  P   HLRVFG   +V    ++R KLDDK+   +F+GYDA+S  Y +YNP+++   +SR V +DEE
Sbjct:  639 MARSMLKSKKLPKEFWAEAVACAVYLTNRSPTRSVSGKTPQEAWSGRKPGISHLRVFGSIAHVHVPDEKRSKLDDKSEKYIFIGYDANSKGYKLYNPDSRKTIISRNVVFDEE 751          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25317.6890.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A151RDA4_CAJCA2.020e-2644.25Retrovirus-related Pol polyprotein from transposon... [more]
A0A1J3DPC7_NOCCA3.390e-2646.02Retrovirus-related Pol polyprotein from transposon... [more]
Q60DG5_ORYSJ2.480e-2546.85Putative polyprotein n=3 Tax=Oryza sativa subsp. j... [more]
A0A2I0WJT9_9ASPA3.430e-2541.59Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y2LAF7_ARAVE6.740e-2544.44Retrovirus-related Pol polyprotein from transposon... [more]
A0A1R3HQR7_COCAP8.540e-2545.54Integrase catalytic domain-containing protein n=1 ... [more]
A0A446QWW7_TRITD1.200e-2447.32Uncharacterized protein n=1 Tax=Triticum turgidum ... [more]
A0A151TGQ2_CAJCA1.540e-2445.13Retrovirus-related Pol polyprotein from transposon... [more]
I1NXJ5_ORYGL1.550e-2446.43Integrase catalytic domain-containing protein n=1 ... [more]
A0A151RPT4_CAJCA1.610e-2445.13Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25317contigH-paniculata_contig25317:2043..2794 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score113.6
Seed ortholog evalue8.2e-23
Seed eggNOG ortholog15368.BRADI1G43550.1
KEGG koko:K20093
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37THH@33090,3GG2K@35493,3IKX9@38820,3M2IR@4447,COG2801@1,KOG0017@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Exons1
Model size752
Cds size468
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929746.1246934-CDS-H-paniculata_contig25317:2042..25101622929746.1246934-CDS-H-paniculata_contig25317:2042..2510Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25317 2043..2510 +
1691480993.3008146-CDS-H-paniculata_contig25317:2042..25101691480993.3008146-CDS-H-paniculata_contig25317:2042..2510Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25317 2043..2510 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929746.1622915-UTR-H-paniculata_contig25317:2510..27941622929746.1622915-UTR-H-paniculata_contig25317:2510..2794Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25317 2511..2794 +
1691480993.3128495-UTR-H-paniculata_contig25317:2510..27941691480993.3128495-UTR-H-paniculata_contig25317:2510..2794Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25317 2511..2794 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25317.6890.1prot_H-paniculata_contig25317.6890.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig25317 2043..2510 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig25317.6890.1

>prot_H-paniculata_contig25317.6890.1 ID=prot_H-paniculata_contig25317.6890.1|Name=mRNA_H-paniculata_contig25317.6890.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=156bp
MAKANMITANMSHRYWGEAVRSAVYYLNRAPTRSHNGGTPYEKWHGETPK
FDHLRVFGCTVYVMFQSQQRRKLDDKAWTGVFLGYDADSPSYHIYNPENK
SVQLSRKVRYDEEDFVTGHRGQQEHEGTRNMEVFFQQHQSCQRSFDPLPE
ASKQA*
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mRNA from alignment at H-paniculata_contig25317:2043..2794+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig25317.6890.1 ID=mRNA_H-paniculata_contig25317.6890.1|Name=mRNA_H-paniculata_contig25317.6890.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=752bp|location=Sequence derived from alignment at H-paniculata_contig25317:2043..2794+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCAAAAGCCAACATGATCACCGCCAACATGAGTCATCGATATTGGGG GGAAGCGGTGCGCTCGGCAGTGTACTACCTAAATCGCGCCCCGACGCGAT CGCACAACGGAGGAACACCGTACGAAAAATGGCACGGCGAGACACCAAAG TTTGACCACCTTCGCGTCTTCGGCTGCACGGTGTATGTCATGTTCCAGTC GCAGCAGAGGCGCAAGCTCGACGACAAAGCATGGACGGGGGTATTTCTGG GGTACGACGCGGACAGTCCAAGTTATCACATATATAACCCGGAAAACAAG AGCGTCCAGTTGAGCAGGAAAGTGAGATATGATGAAGAGGACTTCGTAAC GGGTCATCGCGGACAGCAGGAACACGAAGGGACGCGAAACATGGAAGTGT TTTTTCAACAGCACCAGTCATGCCAGCGGTCATTCGATCCCTTGCCCGAG GCGAGTAAGCAAGCGTAACTAACACGGACGACCGGACGTCGGCGTCATAA ATGCCGCCTATATTACCGATACATTCGCTGCCAACCACCAGCGCAAACCC ATTCAGTGTCTTGAGCGATCACGATGATCGCGACAATAACGGCGACTCCA AGATGAAGGATGCGGAGCCCGCAGTCGACGACGCACCATCAGCAGGGACA GTCGCACCCGCGCCGCGGGGAAACACCACGAACCAGTCGGGGACGAAGGC GCAGCGTCCGCGAGATCGGTCACCACTACGAACACGGGCGAGAGCAAGGG AA
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Coding sequence (CDS) from alignment at H-paniculata_contig25317:2043..2794+

>mRNA_H-paniculata_contig25317.6890.1 ID=mRNA_H-paniculata_contig25317.6890.1|Name=mRNA_H-paniculata_contig25317.6890.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=936bp|location=Sequence derived from alignment at H-paniculata_contig25317:2043..2794+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCAAAAGCCAACATGATCACCGCCAACATGAGTCATCGATATTGGGG
GGAAGCGGTGCGCTCGGCAGTGTACTACCTAAATCGCGCCCCGACGCGAT
CGCACAACGGAGGAACACCGTACGAAAAATGGCACGGCGAGACACCAAAG
TTTGACCACCTTCGCGTCTTCGGCTGCACGGTGTATGTCATGTTCCAGTC
GCAGCAGAGGCGCAAGCTCGACGACAAAGCATGGACGGGGGTATTTCTGG
GGTACGACGCGGACAGTCCAAGTTATCACATATATAACCCGGAAAACAAG
AGCGTCCAGTTGAGCAGGAAAGTGAGATATGATGAAGAGGACTTCGTAAC
GGGTCATCGCGGACAGCAGGAACACGAAGGGACGCGAAACATGGAAGTGT
TTTTTCAACAGCACCAGTCATGCCAGCGGTCATTCGATCCCTTGCCCGAG
GCGAGTAAGCAAGCGTAAATGGCAAAAGCCAACATGATCACCGCCAACAT
GAGTCATCGATATTGGGGGGAAGCGGTGCGCTCGGCAGTGTACTACCTAA
ATCGCGCCCCGACGCGATCGCACAACGGAGGAACACCGTACGAAAAATGG
CACGGCGAGACACCAAAGTTTGACCACCTTCGCGTCTTCGGCTGCACGGT
GTATGTCATGTTCCAGTCGCAGCAGAGGCGCAAGCTCGACGACAAAGCAT
GGACGGGGGTATTTCTGGGGTACGACGCGGACAGTCCAAGTTATCACATA
TATAACCCGGAAAACAAGAGCGTCCAGTTGAGCAGGAAAGTGAGATATGA
TGAAGAGGACTTCGTAACGGGTCATCGCGGACAGCAGGAACACGAAGGGA
CGCGAAACATGGAAGTGTTTTTTCAACAGCACCAGTCATGCCAGCGGTCA
TTCGATCCCTTGCCCGAGGCGAGTAAGCAAGCGTAA
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