mRNA_H-paniculata_contig25300.6886.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig25300.6886.1
Unique NamemRNA_H-paniculata_contig25300.6886.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig25300.6886.1 vs. uniprot
Match: A0A6H5KT19_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT19_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 1.860e-35
Identity = 74/182 (40.66%), Postives = 113/182 (62.09%), Query Frame = 3 
Query:  219 RPKLEEVNLLEWQYGVAVSGGVELMGLNAKAHHQLGHWLIVLDCTNTFNSVKPAAILEEVAIRTPALTPFVAKCYGKKPAYIIFQMDTGERRKISLNTGIHQGDGLGLALFCMPVGPILRKCRERFEALEVELLAYLDDLVPARRELTEENLWANHFLVQELARIGVQINNAKTKAVPPMNY 764
            +PKLEE+     Q+GVAV+GGVE + ++A+   Q GHW++  DC+N  N+ K  AI+ + A   P L   +A+CY + PA  I+ MD+GERR I   +G+ QGDG+G  LFC  + PI+ K R +++ L V L AY+DD+    + +T E++     LV EL  +G+ +N  K+ A+PP  +
Sbjct:  146 KPKLEEIFREADQFGVAVTGGVEQVAMDAQLVDQTGHWVVQTDCSNGLNTGKRTAIMAQAAKSVPDLVGCIARCY-ELPAKAIYAMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVSLKAYMDDISLHFKNITAESIQVIPDLVDELEAVGIIVNRGKSSALPPPGH 326
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BLAST of mRNA_H-paniculata_contig25300.6886.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 1.350e-11
Identity = 54/171 (31.58%), Postives = 93/171 (54.39%), Query Frame = 2 
Query: 1202 KVVMSIGSGGLGLTSAWSRRWSATVGSMCGMLPQIIADSSGPSGPSGEGVRAHLPGTSMVLSMGATLRVLAEQGGVSAEQQAAVLPPGLVAWAHGGRSED-RSLPTPHIDILGGHDAPGRNSRRLLGKVGNLVHKAKITTLLSLLVNL--APADRPPTLDDPFGGIEPVDV 1705
            +  +S G+GGLG++SA  RR+SA++G++   LP++IA  +GP G S   V+  +P T++V  MG  ++ L ++ G++ E    ++PP  V+WA     E+ R  PT  +  L  HD     +R+   K+G  ++K  +   +  L  L  APA+    + D   G +  D+
Sbjct:  957 QTQLSTGAGGLGVSSAVMRRFSASLGNLISTLPEVIASLTGPLGDS---VKEKIPNTTLVARMGDAIKELNQEHGLTEEVLRGIVPPSWVSWALEDPGENGRRQPT--MAELAAHDGESTTARKAQHKLGKAINKNLLAKFMDSLEELQRAPANDLLAIKDQLTGGQVSDI 1122
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25300.6886.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KT19_9PHAE1.860e-3540.66Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JH58_9PHAE1.350e-1131.58Reverse transcriptase domain-containing protein n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25300contigH-paniculata_contig25300:826..2768 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.5
Seed ortholog evalue2.6e-07
Seed eggNOG ortholog296587.XP_002506989.1
Hectar predicted targeting categoryother localisation
EggNOG OGs2E24P@1,2S9D9@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size1943
Cds size1245
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25300.6886.1prot_H-paniculata_contig25300.6886.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig25300 888..2132 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929745.8046026-UTR-H-paniculata_contig25300:825..8871622929745.8046026-UTR-H-paniculata_contig25300:825..887Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25300 826..887 +
1691480993.1604187-UTR-H-paniculata_contig25300:825..8871691480993.1604187-UTR-H-paniculata_contig25300:825..887Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25300 826..887 +
1622929745.837815-UTR-H-paniculata_contig25300:2132..27681622929745.837815-UTR-H-paniculata_contig25300:2132..2768Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25300 2133..2768 +
1691480993.1810806-UTR-H-paniculata_contig25300:2132..27681691480993.1810806-UTR-H-paniculata_contig25300:2132..2768Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25300 2133..2768 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929745.8207119-CDS-H-paniculata_contig25300:887..21321622929745.8207119-CDS-H-paniculata_contig25300:887..2132Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25300 888..2132 +
1691480993.1732163-CDS-H-paniculata_contig25300:887..21321691480993.1732163-CDS-H-paniculata_contig25300:887..2132Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25300 888..2132 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig25300.6886.1

>prot_H-paniculata_contig25300.6886.1 ID=prot_H-paniculata_contig25300.6886.1|Name=mRNA_H-paniculata_contig25300.6886.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=415bp
MGETHIIHFFSSVIYHTVISSLGHAHVVCGPVGVWSRHESFLIMRVSRQI
QHRPKLEEVNLLEWQYGVAVSGGVELMGLNAKAHHQLGHWLIVLDCTNTF
NSVKPAAILEEVAIRTPALTPFVAKCYGKKPAYIIFQMDTGERRKISLNT
GIHQGDGLGLALFCMPVGPILRKCRERFEALEVELLAYLDDLVPARRELT
EENLWANHFLVQELARIGVQINNAKTKAVPPMNYIPTEREIAALAATGIN
VAEGGGAVVAGTPIETDAFVKQHAVTVVKEKGEEHLARLLAHMPDKQAAM
LIATKFRVLKTCFLERVMDAELYDQAFRLTDNGGLWMLETILEHLQPTEE
YTFFDAGFPANRLKVLPHQRLQVAMSTGSEKLSCRSVQGGWDSPRHGADA
GQQRWGVCAACCRR*
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mRNA from alignment at H-paniculata_contig25300:826..2768+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig25300.6886.1 ID=mRNA_H-paniculata_contig25300.6886.1|Name=mRNA_H-paniculata_contig25300.6886.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1943bp|location=Sequence derived from alignment at H-paniculata_contig25300:826..2768+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTATTGTCATCGGTATTAGAGTATGTCATGCAACATGTGAAGTACTA
TATATTTAGGATATGGGTGAAACCCACATAATTCACTTCTTCTCAAGTGT
TATTTATCACACTGTTATTTCTTCATTGGGTCACGCCCATGTGGTCTGTG
GACCTGTGGGTGTGTGGAGTCGACATGAGTCTTTCCTGATCATGAGAGTA
TCACGGCAAATTCAACACAGGCCGAAACTGGAGGAGGTTAACTTGTTGGA
GTGGCAGTACGGGGTAGCGGTTTCGGGTGGCGTGGAGCTCATGGGCCTCA
ACGCGAAAGCACACCACCAATTGGGGCATTGGCTTATCGTCCTCGACTGT
ACCAATACCTTCAACTCCGTCAAGCCCGCGGCGATCTTGGAAGAAGTGGC
CATCCGCACCCCAGCACTGACACCTTTCGTAGCCAAGTGCTACGGGAAGA
AGCCGGCATATATCATCTTCCAGATGGACACCGGTGAACGCAGGAAAATA
TCCTTGAACACGGGAATCCACCAGGGCGACGGACTGGGACTCGCTCTCTT
CTGCATGCCCGTGGGACCGATTTTGCGCAAGTGCAGAGAACGATTCGAGG
CTCTAGAGGTGGAGCTGTTGGCCTACCTAGACGATCTGGTCCCGGCAAGG
AGGGAGCTGACGGAAGAAAACTTATGGGCGAACCATTTCCTCGTGCAAGA
GCTAGCACGCATAGGAGTGCAGATTAACAATGCCAAGACGAAGGCGGTGC
CCCCAATGAACTATATCCCCACGGAAAGGGAGATCGCTGCGCTGGCGGCG
ACGGGCATCAACGTCGCAGAAGGAGGGGGGGCTGTGGTGGCGGGTACACC
GATTGAGACCGACGCATTCGTTAAGCAGCACGCCGTCACAGTAGTCAAGG
AAAAGGGGGAAGAGCATCTTGCGCGCCTACTAGCGCATATGCCCGACAAA
CAAGCGGCGATGCTGATCGCCACAAAGTTCAGGGTCCTGAAGACCTGCTT
CCTGGAGAGAGTGATGGACGCTGAACTCTACGACCAAGCCTTCAGACTAA
CCGACAATGGTGGACTATGGATGTTGGAAACCATCCTGGAACACCTACAA
CCAACAGAAGAATACACCTTCTTCGACGCCGGCTTCCCGGCGAACCGCCT
CAAAGTCCTGCCCCACCAGCGACTGCAGGTCGCCATGTCGACCGGTTCAG
AAAAGTTGTCATGTCGATCGGTTCAGGGGGGTTGGGACTCACCTCGGCAT
GGAGCAGACGCTGGTCAGCAACGGTGGGGAGTATGTGCGGCATGCTGCCG
CAGATAATCGCAGACTCGTCGGGACCGTCGGGACCGTCGGGGGAGGGGGT
GCGGGCACACCTCCCCGGGACATCGATGGTGCTCTCAATGGGGGCGACTC
TCCGCGTTTTGGCAGAACAGGGAGGAGTTAGCGCCGAACAGCAAGCTGCG
GTGCTGCCGCCCGGGCTGGTCGCGTGGGCACACGGAGGACGGAGCGAAGA
CAGATCGCTGCCAACCCCGCACATCGACATTCTAGGAGGTCACGACGCGC
CAGGGAGGAACTCTCGTCGGCTGCTAGGGAAGGTCGGCAATCTGGTCCAT
AAGGCCAAGATAACGACCTTGCTCTCGCTGCTTGTTAACCTAGCCCCGGC
TGATAGACCACCTACCCTTGATGACCCGTTCGGAGGGATCGAGCCGGTCG
ACGTGGCTAAAGCGAGATTCCGCGGCATATCGGGGACTGGAGCTCTTGCC
GTGCAACGGGCACAGCCCTACGACAACGCCAGGACTGTACCACCAGCAGA
GTACGTGCCCATGGAAAGGAGGCTTCTTTACAAAATGCTCCGAGTTCTCA
CTAGAATCAGCTATTGACGGAGCAGGACTACAGACTCACTCCCGAACACC
AACCATGCCACCTGGATCTCAAAGTTAACCCAATAAACGACCG
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Coding sequence (CDS) from alignment at H-paniculata_contig25300:826..2768+

>mRNA_H-paniculata_contig25300.6886.1 ID=mRNA_H-paniculata_contig25300.6886.1|Name=mRNA_H-paniculata_contig25300.6886.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2490bp|location=Sequence derived from alignment at H-paniculata_contig25300:826..2768+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGTGAAACCCACATAATTCACTTCTTCTCAAGTGTTATTTATCACAC
TGTTATTTCTTCATTGGGTCACGCCCATGTGGTCTGTGGACCTGTGGGTG
TGTGGAGTCGACATGAGTCTTTCCTGATCATGAGAGTATCACGGCAAATT
CAACACAGGCCGAAACTGGAGGAGGTTAACTTGTTGGAGTGGCAGTACGG
GGTAGCGGTTTCGGGTGGCGTGGAGCTCATGGGCCTCAACGCGAAAGCAC
ACCACCAATTGGGGCATTGGCTTATCGTCCTCGACTGTACCAATACCTTC
AACTCCGTCAAGCCCGCGGCGATCTTGGAAGAAGTGGCCATCCGCACCCC
AGCACTGACACCTTTCGTAGCCAAGTGCTACGGGAAGAAGCCGGCATATA
TCATCTTCCAGATGGACACCGGTGAACGCAGGAAAATATCCTTGAACACG
GGAATCCACCAGGGCGACGGACTGGGACTCGCTCTCTTCTGCATGCCCGT
GGGACCGATTTTGCGCAAGTGCAGAGAACGATTCGAGGCTCTAGAGGTGG
AGCTGTTGGCCTACCTAGACGATCTGGTCCCGGCAAGGAGGGAGCTGACG
GAAGAAAACTTATGGGCGAACCATTTCCTCGTGCAAGAGCTAGCACGCAT
AGGAGTGCAGATTAACAATGCCAAGACGAAGGCGGTGCCCCCAATGAACT
ATATCCCCACGGAAAGGGAGATCGCTGCGCTGGCGGCGACGGGCATCAAC
GTCGCAGAAGGAGGGGGGGCTGTGGTGGCGGGTACACCGATTGAGACCGA
CGCATTCGTTAAGCAGCACGCCGTCACAGTAGTCAAGGAAAAGGGGGAAG
AGCATCTTGCGCGCCTACTAGCGCATATGCCCGACAAACAAGCGGCGATG
CTGATCGCCACAAAGTTCAGGGTCCTGAAGACCTGCTTCCTGGAGAGAGT
GATGGACGCTGAACTCTACGACCAAGCCTTCAGACTAACCGACAATGGTG
GACTATGGATGTTGGAAACCATCCTGGAACACCTACAACCAACAGAAGAA
TACACCTTCTTCGACGCCGGCTTCCCGGCGAACCGCCTCAAAGTCCTGCC
CCACCAGCGACTGCAGGTCGCCATGTCGACCGGTTCAGAAAAGTTGTCAT
GTCGATCGGTTCAGGGGGGTTGGGACTCACCTCGGCATGGAGCAGACGCT
GGTCAGCAACGGTGGGGAGTATGTGCGGCATGCTGCCGCAGATAAATGGG
TGAAACCCACATAATTCACTTCTTCTCAAGTGTTATTTATCACACTGTTA
TTTCTTCATTGGGTCACGCCCATGTGGTCTGTGGACCTGTGGGTGTGTGG
AGTCGACATGAGTCTTTCCTGATCATGAGAGTATCACGGCAAATTCAACA
CAGGCCGAAACTGGAGGAGGTTAACTTGTTGGAGTGGCAGTACGGGGTAG
CGGTTTCGGGTGGCGTGGAGCTCATGGGCCTCAACGCGAAAGCACACCAC
CAATTGGGGCATTGGCTTATCGTCCTCGACTGTACCAATACCTTCAACTC
CGTCAAGCCCGCGGCGATCTTGGAAGAAGTGGCCATCCGCACCCCAGCAC
TGACACCTTTCGTAGCCAAGTGCTACGGGAAGAAGCCGGCATATATCATC
TTCCAGATGGACACCGGTGAACGCAGGAAAATATCCTTGAACACGGGAAT
CCACCAGGGCGACGGACTGGGACTCGCTCTCTTCTGCATGCCCGTGGGAC
CGATTTTGCGCAAGTGCAGAGAACGATTCGAGGCTCTAGAGGTGGAGCTG
TTGGCCTACCTAGACGATCTGGTCCCGGCAAGGAGGGAGCTGACGGAAGA
AAACTTATGGGCGAACCATTTCCTCGTGCAAGAGCTAGCACGCATAGGAG
TGCAGATTAACAATGCCAAGACGAAGGCGGTGCCCCCAATGAACTATATC
CCCACGGAAAGGGAGATCGCTGCGCTGGCGGCGACGGGCATCAACGTCGC
AGAAGGAGGGGGGGCTGTGGTGGCGGGTACACCGATTGAGACCGACGCAT
TCGTTAAGCAGCACGCCGTCACAGTAGTCAAGGAAAAGGGGGAAGAGCAT
CTTGCGCGCCTACTAGCGCATATGCCCGACAAACAAGCGGCGATGCTGAT
CGCCACAAAGTTCAGGGTCCTGAAGACCTGCTTCCTGGAGAGAGTGATGG
ACGCTGAACTCTACGACCAAGCCTTCAGACTAACCGACAATGGTGGACTA
TGGATGTTGGAAACCATCCTGGAACACCTACAACCAACAGAAGAATACAC
CTTCTTCGACGCCGGCTTCCCGGCGAACCGCCTCAAAGTCCTGCCCCACC
AGCGACTGCAGGTCGCCATGTCGACCGGTTCAGAAAAGTTGTCATGTCGA
TCGGTTCAGGGGGGTTGGGACTCACCTCGGCATGGAGCAGACGCTGGTCA
GCAACGGTGGGGAGTATGTGCGGCATGCTGCCGCAGATAA
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