prot_H-paniculata_contig25300.6886.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig25300.6886.1
Unique Nameprot_H-paniculata_contig25300.6886.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length415
Homology
BLAST of mRNA_H-paniculata_contig25300.6886.1 vs. uniprot
Match: A0A6H5KT19_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT19_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 6.840e-37
Identity = 74/182 (40.66%), Postives = 113/182 (62.09%), Query Frame = 0
Query:   53 RPKLEEVNLLEWQYGVAVSGGVELMGLNAKAHHQLGHWLIVLDCTNTFNSVKPAAILEEVAIRTPALTPFVAKCYGKKPAYIIFQMDTGERRKISLNTGIHQGDGLGLALFCMPVGPILRKCRERFEALEVELLAYLDDLVPARRELTEENLWANHFLVQELARIGVQINNAKTKAVPPMNY 234
            +PKLEE+     Q+GVAV+GGVE + ++A+   Q GHW++  DC+N  N+ K  AI+ + A   P L   +A+CY + PA  I+ MD+GERR I   +G+ QGDG+G  LFC  + PI+ K R +++ L V L AY+DD+    + +T E++     LV EL  +G+ +N  K+ A+PP  +
Sbjct:  146 KPKLEEIFREADQFGVAVTGGVEQVAMDAQLVDQTGHWVVQTDCSNGLNTGKRTAIMAQAAKSVPDLVGCIARCY-ELPAKAIYAMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVSLKAYMDDISLHFKNITAESIQVIPDLVDELEAVGIIVNRGKSSALPPPGH 326          
BLAST of mRNA_H-paniculata_contig25300.6886.1 vs. uniprot
Match: A0A4T0IKN7_WALIC (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Wallemia ichthyophaga TaxID=245174 RepID=A0A4T0IKN7_WALIC)

HSP 1 Score: 58.2 bits (139), Expect = 1.850e-5
Identity = 52/190 (27.37%), Postives = 87/190 (45.79%), Query Frame = 0
Query:   45 RVSRQIQHRPKLEEVNLLEWQYGVAVSGGVELMGLNAKAHHQLG----HWLIVLDCTNTFNSVKPAAILEEVAIRTPALTPFVAKCYGKKPAYIIFQMDTGERRKISLNTGIHQGDGLGLALFCMPVGPILRKCRERFEALEVELLAYLDDL-VPARRELTEENLWANHFLVQELARIGVQINNAKTKAV 229
            R++ +   R   +E  LL  Q GV  SGGVE + L A+           +LI LD +N FNS+K + + + +    P+L   +   Y      I+   D+     +  + G+ QGD +G  LF +     L++ + + E     L+AYLDD+ + A+ ++ +E      F        G+Q+N  K   V
Sbjct:  195 RITMKTLMRTYYKESALLPCQLGVGSSGGVEPIVLAAQRQVDKPCTDFKFLISLDFSNAFNSIKRSTLGKAIHRNLPSLFKAIKWAYDAPTPLIV--NDSKSTVTVESSEGVKQGDPMGPLLFSLAAKETLQQLQRQLEG-RATLMAYLDDIFLFAKEDVMDE---VEDFFKN--VTCGLQLNRKKCSVV 376          
BLAST of mRNA_H-paniculata_contig25300.6886.1 vs. uniprot
Match: A0A812UV62_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812UV62_9DINO)

HSP 1 Score: 57.0 bits (136), Expect = 5.530e-5
Identity = 69/245 (28.16%), Postives = 110/245 (44.90%), Query Frame = 0
Query:   65 QYGVAVSGGVELMGLNAK--AHHQLGHW---LIVLDCTNTFNSVKPAAILEEVAIRTPALTPFVAKCYGKKPAYIIFQMDTGERRKISLNTGIHQGDGLGLALFCMPVGPILRKCRERFEALEVELLAYLDDLVPAR--RELTEENLWANHFLVQELARIGVQINNAKTKAVPPMNYIPTEREIAALAATGINVAEGGGAVVAGTPIETDAFVKQHAVTVVKEKGEEHLARLLAHMPDKQAAMLI 302
            Q GVAV  G E      +  AH   GH    ++ +D  N FN+V  AA+L +V +  P L+P+    Y ++ + ++F    G+   +S   G+ QGD LG  LF + + P L+  R      E+ + A+LDD+  A   R +      A + L     ++G+++N  K + V       +  ++ A  A G+     G     G PI    +     V    EK    L R LA +PD Q  +L+
Sbjct:  728 QVGVAVPLGCEAAVHTVRHWAHCNSGHTCKVVLKVDFRNAFNTVDRAALLRQVRLHMPGLSPWAEWTY-ERHSRLLF----GDAC-LSSEAGVQQGDPLGPLLFSLALQPALKAARSGPTPPEL-VTAFLDDVCLAGDYRHVAA----ALNRLAAAARQVGLELNPGKCEVVTCAGP-DSSADMRAFPA-GVQTGSSGAFSFLGAPIGPAHYCMTERV----EKARP-LLRELAALPDVQTGLLL 954          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25300.6886.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KT19_9PHAE6.840e-3740.66Reverse transcriptase domain-containing protein (F... [more]
A0A4T0IKN7_WALIC1.850e-527.37Reverse transcriptase domain-containing protein (F... [more]
A0A812UV62_9DINO5.530e-528.16Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 81..229
e-value: 2.0E-12
score: 47.1

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25300contigH-paniculata_contig25300:888..2132 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25300.6886.1mRNA_H-paniculata_contig25300.6886.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig25300 826..2768 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig25300.6886.1 ID=prot_H-paniculata_contig25300.6886.1|Name=mRNA_H-paniculata_contig25300.6886.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=415bp
MGETHIIHFFSSVIYHTVISSLGHAHVVCGPVGVWSRHESFLIMRVSRQI
QHRPKLEEVNLLEWQYGVAVSGGVELMGLNAKAHHQLGHWLIVLDCTNTF
NSVKPAAILEEVAIRTPALTPFVAKCYGKKPAYIIFQMDTGERRKISLNT
GIHQGDGLGLALFCMPVGPILRKCRERFEALEVELLAYLDDLVPARRELT
EENLWANHFLVQELARIGVQINNAKTKAVPPMNYIPTEREIAALAATGIN
VAEGGGAVVAGTPIETDAFVKQHAVTVVKEKGEEHLARLLAHMPDKQAAM
LIATKFRVLKTCFLERVMDAELYDQAFRLTDNGGLWMLETILEHLQPTEE
YTFFDAGFPANRLKVLPHQRLQVAMSTGSEKLSCRSVQGGWDSPRHGADA
GQQRWGVCAACCRR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom