mRNA_H-paniculata_contig25227.6871.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig25227.6871.1
Unique NamemRNA_H-paniculata_contig25227.6871.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig25227.6871.1 vs. uniprot
Match: D8LR47_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LR47_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 1.020e-17
Identity = 48/94 (51.06%), Postives = 61/94 (64.89%), Query Frame = 1 
Query:  322 LATEVPLVAAEGPPSATMRFMEQVHGHYRASED-DR--EAQQLYVSKRALVEDRACRRLHKTPHAIAGLWPPWFISTADLAEGFWSTEVAALSC 594
            LA  + + + +  PSA MRFME +HG    S+  DR  E  QLYVSKRA VEDRAC RL +TPH I      WF +  ++AEGF+S +VAAL+C
Sbjct:    7 LAAGIVVGSVQASPSAPMRFMEHLHGSGVDSQSPDRGGEGLQLYVSKRAWVEDRACTRLSRTPHLITTSQSTWFPTAVEMAEGFYSADVAALAC 100
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25227.6871.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LR47_ECTSI1.020e-1751.06Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25227contigH-paniculata_contig25227:1208..3290 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_004380.1
Exons2
Model size943
Cds size321
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25227.6871.1prot_H-paniculata_contig25227.6871.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig25227 1484..2944 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929743.391242-UTR-H-paniculata_contig25227:1207..14831622929743.391242-UTR-H-paniculata_contig25227:1207..1483Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25227 1208..1483 +
1691480992.0040653-UTR-H-paniculata_contig25227:1207..14831691480992.0040653-UTR-H-paniculata_contig25227:1207..1483Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25227 1208..1483 +
1622929743.4470062-UTR-H-paniculata_contig25227:2944..32901622929743.4470062-UTR-H-paniculata_contig25227:2944..3290Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25227 2945..3290 +
1691480992.0486631-UTR-H-paniculata_contig25227:2944..32901691480992.0486631-UTR-H-paniculata_contig25227:2944..3290Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25227 2945..3290 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929743.4087741-CDS-H-paniculata_contig25227:1483..16521622929743.4087741-CDS-H-paniculata_contig25227:1483..1652Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25227 1484..1652 +
1691480992.0163434-CDS-H-paniculata_contig25227:1483..16521691480992.0163434-CDS-H-paniculata_contig25227:1483..1652Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25227 1484..1652 +
1622929743.425722-CDS-H-paniculata_contig25227:2792..29441622929743.425722-CDS-H-paniculata_contig25227:2792..2944Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25227 2793..2944 +
1691480992.0293355-CDS-H-paniculata_contig25227:2792..29441691480992.0293355-CDS-H-paniculata_contig25227:2792..2944Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25227 2793..2944 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig25227.6871.1

>prot_H-paniculata_contig25227.6871.1 ID=prot_H-paniculata_contig25227.6871.1|Name=mRNA_H-paniculata_contig25227.6871.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=107bp
MAVGWWCMLVAFLIGLATEVPLVAAEGPPSATMRFMEQVHGHYRASEDDR
EAQQLYVSKRALVEDRACRRLHKTPHAIAGLWPPWFISTADLAEGFWSTE
VAALSC*
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mRNA from alignment at H-paniculata_contig25227:1208..3290+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig25227.6871.1 ID=mRNA_H-paniculata_contig25227.6871.1|Name=mRNA_H-paniculata_contig25227.6871.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2083bp|location=Sequence derived from alignment at H-paniculata_contig25227:1208..3290+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCACCTCCGACCACCACTTCGCACCCGGCACCGCCCCCGGCCCCCACGA
CCCCCTCTACCCCCCACCAAGTACTGTTGCATATACACGACTACACGTTA
TTGCTGCGTGTGTAACAACAACAGACAGGGGAGCCAGACGTCCGTACCAG
CAAGTGGTGGTCTGCGACACAAATCTTCGTTCTTACCAGGAGTCTACGAC
CGACGACAGACAGACAACATATTCAGTGAACTTTGTGCTAAGATATCGTA
GTTCAGACCGAGTGCTCCGACTTATTATGGCTGTGGGATGGTGGTGTATG
TTGGTAGCGTTCCTGATCGGACTAGCGACTGAGGTACCTCTCGTTGCTGC
GGAGGGACCCCCCTCCGCGACCATGCGCTTCATGGAGCAAGTTCATGGTC
ACTACCGCGCGTCGGAGGACGATAGAGAAGCTCAGCAACTTTATGGTGAG
CTTTTAATTTGTATTTGTTCCTGCTCGGTACTCTTTTCCCTGCCAGCCCT
GCTTGAAGAACATTAATAGGGCTATTTTTTCTGAAAGCTCATGATGTGCG
TGCGTGTGAGCCTGCGTGCTGCATTGTCCGAAAGCGAGGTACAAATATTC
GCATTGAAATGGCAGTAGAGAGTATCCGGACGCAAGGTTTTGTAGAAAAC
ACGGGGGGGGCAAGAGAGGGTTCGGGGGTGTAGTGCAAGTGAAAGAGGAG
GACAGAGCTATTCATCGACTCCCTTGTTCTTTTGCACAAAACTGTGGCGT
ACTGAAAGCTGGATATGCTCTGTGTTGTGCCAGCGGCATCTTGAGGCGCA
GTACAAACCAGAGAGCAAGCATGGACAGGCACCGTCGTATCTCTAAACGT
TACGCGAGAAGCAGTGCAGTAACGTCCGAAGCTGGCGGGGGGGGGAATGG
TTGTTTTGCACGTTTGTTCTGCCGTCTATCTCCATGGATGGGTACTTTTG
TTACTTCTACTGATCCAGCCCGATTGTCTAACCTTGAACGGGGTCACAAT
GTACGGCAATTTAACAAAGATGATATTATGTTATCATCTATCCGTGTCCA
ATATTTAGTACTTGTCCGTCACCGATACAATCTGCATTTCATGTGAAATC
GGCATGTGCTGTTCCTATTGCGTTAAAAAAAACGTTGTGTTTTTTTGCAT
CGTCCTTAGTAACATGTTGAACGCTTAAAAAAAAATCGTGACCAAAACGT
TTCGGGCTCTACGCACTCATTGATAACTCGTCTCTTTAGATGAATCGCTG
GTGGAAAAATAGTGACATGGTTTATTGGGTGGGTGTATTTGTATTTTCTC
TAATTTTCTTTTGGTATCAGTCTTCCGTGTGTATGCCGATGCGTATCACA
CATATTACGCCTGTTTAGTGTTTTTCTAATTTTGGTGATGAATGTACACA
ACCGAAGGTTTAGATCAGCTGCAAAACATCAACATTGGTGCAACGCAGTT
ATTCCATAGCGCCAGACCTCAATTCTACTACGGTAACTATGGCATGTTGG
TTCAATTTTGCTGATGAATTTATCAGTGAAATTTTAAGTCAGCTGGATAA
CCCCTTCCTATATGTATGTATGTGCACCCTTTCAGTTTCTAAACGTGCGT
TGGTGGAGGATCGCGCTTGCCGCCGCCTTCACAAGACGCCACACGCAATA
GCCGGCCTCTGGCCGCCATGGTTCATCAGTACGGCCGACCTAGCGGAAGG
CTTCTGGTCAACGGAGGTGGCTGCTCTCTCGTGTTGATGTGTGGATGTGA
ACGTGTCTGTTGAGAGGTCTAACGATGTGACTCTGCTGCCGCTGTTGCTG
ATGGTGGTGGTGGTGGTGCTCATGTTGTCTTTCGGTGTCGTTTGCTTGCT
TCGGCCAGTTTAGCTTTTTAGAAATCATATACCGGATCCGCAGTGTTCGT
GATGATGATTGGGTGGAGGTGAAGGCTTTGCTGTGCAGCCCCTGGACAAG
TAGGGGAAAAGGGGAGGAAGGGTGAGCGAGGGCACATGTATGGCCTTCAT
ATGGAGCGGAATTACCTTGGAACAAGAGAGATGAAATGAAGAAAGTAGAT
CGCTATGCCCTACGAAGCACTTTTTTATGGAGC
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Coding sequence (CDS) from alignment at H-paniculata_contig25227:1208..3290+

>mRNA_H-paniculata_contig25227.6871.1 ID=mRNA_H-paniculata_contig25227.6871.1|Name=mRNA_H-paniculata_contig25227.6871.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at H-paniculata_contig25227:1208..3290+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTGTGGGATGGTGGTGTATGTTGGTAGCGTTCCTGATCGGACTAGC
GACTGAGGTACCTCTCGTTGCTGCGGAGGGACCCCCCTCCGCGACCATGC
GCTTCATGGAGCAAGTTCATGGTCACTACCGCGCGTCGGAGGACGATAGA
GAAGCTCAGCAACTTTATGATGGCTGTGGGATGGTGGTGTATGTTGGTAG
CGTTCCTGATCGGACTAGCGACTGAGGTACCTCTCGTTGCTGCGGAGGGA
CCCCCCTCCGCGACCATGCGCTTCATGGAGCAAGTTCATGGTCACTACCG
CGCGTCGGAGGACGATAGAGAAGCTCAGCAACTTTATGTTTCTAAACGTG
CGTTGGTGGAGGATCGCGCTTGCCGCCGCCTTCACAAGACGCCACACGCA
ATAGCCGGCCTCTGGCCGCCATGGTTCATCAGTACGGCCGACCTAGCGGA
AGGCTTCTGGTCAACGGAGGTGGCTGCTCTCTCGTGTTGATTTCTAAACG
TGCGTTGGTGGAGGATCGCGCTTGCCGCCGCCTTCACAAGACGCCACACG
CAATAGCCGGCCTCTGGCCGCCATGGTTCATCAGTACGGCCGACCTAGCG
GAAGGCTTCTGGTCAACGGAGGTGGCTGCTCTCTCGTGTTGA
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