mRNA_H-paniculata_contig25070.6821.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig25070.6821.1
Unique NamemRNA_H-paniculata_contig25070.6821.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig25070.6821.1 vs. uniprot
Match: D7G3U1_ECTSI (Sphingosine-1-phosphate phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3U1_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 4.180e-27
Identity = 55/76 (72.37%), Postives = 60/76 (78.95%), Query Frame = 1 
Query:    1 VAGYLLGGILLGFWLIFGGAVDAFIVGNPWAWLAVLAAGGAVIFAYPYDPKRWTDSYGDTALIVATATGFLEAYCL 228
            +AGYLLGG LL FWL FGGAVDAFIVGNP AWL VL   G  I AYP  PK+WT+S+GDT +IVATA GFLEA CL
Sbjct:  231 LAGYLLGGFLLTFWLAFGGAVDAFIVGNPMAWLVVLGGAGGAILAYPC-PKKWTNSFGDTVIIVATAAGFLEACCL 305
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BLAST of mRNA_H-paniculata_contig25070.6821.1 vs. uniprot
Match: A0A6H5KSD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSD3_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 1.040e-9
Identity = 29/43 (67.44%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:   91 AWLAVLAAGGAVIFAYPYDPKRWTDSYGDTALIVATATGFLEA 219
            AWL VL   G  I AYP  PKRWT+S+GDT +IVATA GFLEA
Sbjct:   23 AWLIVLGGAGGAILAYPC-PKRWTNSFGDTVIIVATAAGFLEA 64
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25070.6821.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G3U1_ECTSI4.180e-2772.37Sphingosine-1-phosphate phosphatase n=1 Tax=Ectoca... [more]
A0A6H5KSD3_9PHAE1.040e-967.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25070contigH-paniculata_contig25070:2867..3420 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score111.3
Seed ortholog evalue2e-22
Seed eggNOG ortholog2880.D7G3U1
Preferred nameSGPP2
KEGG rclassRC00017
KEGG koko:K04716,ko:K04717
KEGG ReactionR06520
KEGG Pathwayko00600,ko04071,map00600,map04071
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005783,GO:0005789,GO:0006066,GO:0006629,GO:0006643,GO:0006644,GO:0006665,GO:0006668,GO:0006670,GO:0006793,GO:0006796,GO:0006807,GO:0006915,GO:0007154,GO:0007165,GO:0007166,GO:0008150,GO:0008152,GO:0008219,GO:0008610,GO:0009058,GO:0009987,GO:0012501,GO:0012505,GO:0016020,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019637,GO:0019751,GO:0023052,GO:0030148,GO:0031974,GO:0031981,GO:0031984,GO:0034311,GO:0035556,GO:0042175,GO:0042392,GO:0042578,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046467,GO:0046519,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0070013,GO:0070780,GO:0071704,GO:0097164,GO:0097190,GO:0097191,GO:0097193,GO:0098827,GO:1901564,GO:1901566,GO:1901576,GO:1901615
EggNOG free text desc.sphingosine-1-phosphate phosphatase activity
EggNOG OGsCOG0671@1,KOG2822@2759
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons2
Model size234
Cds size231
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929736.801486-CDS-H-paniculata_contig25070:2868..30091622929736.801486-CDS-H-paniculata_contig25070:2868..3009Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25070 2869..3009 -
1691480989.2009864-CDS-H-paniculata_contig25070:2868..30091691480989.2009864-CDS-H-paniculata_contig25070:2868..3009Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25070 2869..3009 -
1622929736.8160663-CDS-H-paniculata_contig25070:3330..34201622929736.8160663-CDS-H-paniculata_contig25070:3330..3420Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25070 3331..3420 -
1691480989.2162724-CDS-H-paniculata_contig25070:3330..34201691480989.2162724-CDS-H-paniculata_contig25070:3330..3420Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25070 3331..3420 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25070.6821.1prot_H-paniculata_contig25070.6821.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig25070 2869..3420 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig25070.6821.1

>prot_H-paniculata_contig25070.6821.1 ID=prot_H-paniculata_contig25070.6821.1|Name=mRNA_H-paniculata_contig25070.6821.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=77bp
VAGYLLGGILLGFWLIFGGAVDAFIVGNPWAWLAVLAAGGAVIFAYPYDP
KRWTDSYGDTALIVATATGFLEAYCLA
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mRNA from alignment at H-paniculata_contig25070:2867..3420-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig25070.6821.1 ID=mRNA_H-paniculata_contig25070.6821.1|Name=mRNA_H-paniculata_contig25070.6821.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=554bp|location=Sequence derived from alignment at H-paniculata_contig25070:2867..3420- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGCTGGATATTTACTTGGAGGGATATTGCTGGGCTTCTGGCTGATCTT
CGGGGGTGCCGTTGACGCCTTCATCGTGGGAAACCCATGGGTAAGGCAGG
CAAGGGTAAGGGGGCGCTAGCAGGGGAGGGAGGGGGGGCGGGCTGGGCCT
GTGAGGAGGCTTTTGAATCCTGGGATTGCAAAAAGAAGAAATTGTAGCAG
AAGAAATTGACCGGAAACGTCGAGGGATAAAGTAGATAGAGTAGGTAAAA
ACGCCTGAATTTTTAAGCCACACTTGGCAACGTACATAGGAAAGAGCGAT
CAGCCATCGGAGATCGCTCTGATAGGGGAAAAGCTCCGTCCTCCCGAGGA
TGTGTGCTCAATGGTCTGACAATATGAGTTCCCCCCCCCCCCGTGTCATC
GCGATGTGCAGGCTTGGTTGGCCGTTCTCGCTGCTGGCGGGGCTGTGATT
TTTGCTTACCCTTATGATCCGAAACGTTGGACGGATTCCTACGGGGACAC
TGCGCTCATCGTAGCCACCGCCACGGGTTTCCTAGAGGCGTACTGTCTTG
CGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig25070:2867..3420-

>mRNA_H-paniculata_contig25070.6821.1 ID=mRNA_H-paniculata_contig25070.6821.1|Name=mRNA_H-paniculata_contig25070.6821.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at H-paniculata_contig25070:2867..3420- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGCTGGATATTTACTTGGAGGGATATTGCTGGGCTTCTGGCTGATCTT
CGGGGGTGCCGTTGACGCCTTCATCGTGGGAAACCCATGGGTGGCTGGAT
ATTTACTTGGAGGGATATTGCTGGGCTTCTGGCTGATCTTCGGGGGTGCC
GTTGACGCCTTCATCGTGGGAAACCCATGGGCTTGGTTGGCCGTTCTCGC
TGCTGGCGGGGCTGTGATTTTTGCTTACCCTTATGATCCGAAACGTTGGA
CGGATTCCTACGGGGACACTGCGCTCATCGTAGCCACCGCCACGGGTTTC
CTAGAGGCGTACTGTCTTGCGGCTTGGTTGGCCGTTCTCGCTGCTGGCGG
GGCTGTGATTTTTGCTTACCCTTATGATCCGAAACGTTGGACGGATTCCT
ACGGGGACACTGCGCTCATCGTAGCCACCGCCACGGGTTTCCTAGAGGCG
TACTGTCTTGCG
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