prot_H-paniculata_contig24964.6791.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig24964.6791.1
Unique Nameprot_H-paniculata_contig24964.6791.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length250
Homology
BLAST of mRNA_H-paniculata_contig24964.6791.1 vs. uniprot
Match: A0A6H5L0N9_9PHAE (DNA polymerase zeta catalytic subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0N9_9PHAE)

HSP 1 Score: 312 bits (799), Expect = 5.190e-94
Identity = 172/261 (65.90%), Postives = 186/261 (71.26%), Query Frame = 0
Query:    1 LTVLSLEIHVQVGSDRRPDPRRDSVHAVCWRVKDAFTSAEREVVEVKTGAIVLPPAETAANVGVRATIGSSRTGPGSGPTSSSGGGELPG--VAAVSRTSQFCLKCGKGKDS------------------ADAVGAREGEGRRTFRNGLGKGVKVVEVCSEAQLFRALVGVFCLHDPDFVVGWEVQGDSLGYVIERGLNMEPSMDMTRLLSRTPGREADGRNGRDEWGKTHGSGIWLTGRTVLNMWRLMRSELKLCSYSLQ 241
            LTVLSLE+HVQV + RRPDPRRD VHAVCWRVKDAFTSAERE VE  +G IVLP A  A  V V A              + SGGG+  G   A  SR  + CLKCG+ +D                   A   G     GR TFR+GLGK V+V+EVCSE Q+FRALV VFC HDPDFV GWEVQGDSLGYVIERGLNMEPSMDMTRLLSRTPGR+AD RN RDEWGKTHGSGIWLTGRTVLNMWRLMRSELKLCSY+LQ
Sbjct: 1940 LTVLSLELHVQVPASRRPDPRRDCVHAVCWRVKDAFTSAERETVETTSGVIVLPLA--ARGVAVPAAA------------AGSGGGDRNGGHSAEGSREEEACLKCGERRDDVNRAFCCFEGGGFLGQGIASGGGTEVETGRATFRHGLGKDVEVLEVCSEEQVFRALVRVFCRHDPDFVAGWEVQGDSLGYVIERGLNMEPSMDMTRLLSRTPGRDADKRNARDEWGKTHGSGIWLTGRTVLNMWRLMRSELKLCSYTLQ 2186          
BLAST of mRNA_H-paniculata_contig24964.6791.1 vs. uniprot
Match: D7G846_ECTSI (DNA polymerase zeta catalytic subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G846_ECTSI)

HSP 1 Score: 305 bits (782), Expect = 1.000e-91
Identity = 167/259 (64.48%), Postives = 182/259 (70.27%), Query Frame = 0
Query:    1 LTVLSLEIHVQVGSDRRPDPRRDSVHAVCWRVKDAFTSAEREVVEVKTGAIVLPPAETAANVGVRATIGSSRTGPGSGPTSSSGGGELPGVAAVSRTSQFCLKCGKGKDS------------------ADAVGAREGEGRRTFRNGLGKGVKVVEVCSEAQLFRALVGVFCLHDPDFVVGWEVQGDSLGYVIERGLNMEPSMDMTRLLSRTPGREADGRNGRDEWGKTHGSGIWLTGRTVLNMWRLMRSELKLCSYSLQ 241
            LTVLSLE+HVQV + RRPDPRRD VHAVCWRVKDAFTSAERE VE ++G IVLP A      GV AT               S  G        SR  + CLKCG+ +D                   A   G     GR T R+GLG+ V+V+EVCSE Q+FRALVGVFC HDPDFVVGWEVQGDSLGYV+ERGLNMEPSMDMTRLLSRTPGR+AD RN RDEWGKTHGSGIWLTGRTVLNMWRLMRSELKLCSY+LQ
Sbjct: 2045 LTVLSLELHVQVPASRRPDPRRDCVHAVCWRVKDAFTSAEREAVETRSGVIVLPLAAR----GVAATSXXXXXXXXXXXXXDSADG--------SRKEEACLKCGEQRDDVNRAFCCFEGGGFLGQGIASGGGTEVETGRATLRHGLGRDVEVLEVCSEEQVFRALVGVFCRHDPDFVVGWEVQGDSLGYVVERGLNMEPSMDMTRLLSRTPGRDADKRNARDEWGKTHGSGIWLTGRTVLNMWRLMRSELKLCSYTLQ 2291          
BLAST of mRNA_H-paniculata_contig24964.6791.1 vs. uniprot
Match: A0A7S0NX68_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NX68_9EUKA)

HSP 1 Score: 102 bits (255), Expect = 9.200e-24
Identity = 66/153 (43.14%), Postives = 85/153 (55.56%), Query Frame = 0
Query:   92 AAVSRTSQFCLKCGKGKDSADAVGAREGEGRRTFRNGLGKGVKVVEVC-SEAQLFRALVGVFCLHDPDFVVGWEVQGDSLGYVIERG--LNMEPSMDMTRLLSRTPGREADGRNGRDEWGKTHGSGIWLTGRTVLNMWRLMRSELKLCSYSLQ 241
            A V R S   L+   G     A  AR   G       +G    +VE   SE  L RALVGV   +D D +VGW+++  S+GY+IER   L MEP +   R L RTP  E      RD WG++  +GI LTGR +LN+WR  +SELKLCSY+L+
Sbjct:    3 APVRRESGVLLRTDDGARPWTAAAARRARG--ILAPSVGGAELMVEAHGSEEALLRALVGVVHRYDADMLVGWDLRRASIGYLIERANALKMEPPL--LRQLGRTPTHEGQNERSRDTWGESVATGIHLTGRVLLNLWRCAKSELKLCSYTLE 151          
BLAST of mRNA_H-paniculata_contig24964.6791.1 vs. uniprot
Match: A0A835YMN6_9STRA (DNA polymerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMN6_9STRA)

HSP 1 Score: 108 bits (271), Expect = 2.240e-23
Identity = 61/146 (41.78%), Postives = 81/146 (55.48%), Query Frame = 0
Query:  121 GRRTFRNGLGKGVKVVEVCSEAQLFRALVGVFCLHDPDFVVGWEVQGDSLGYVIERGLNMEPSMD---------------------------MTRLLSRTPGREADGRNGRDEWGKTHGSGIWLTGRTVLNMWRLMRSELKLCSYS 239
            GRR    GLG  ++ V V  E  L  A+  +F   DPD VVGW+VQG S+GY+++R   ++ +                             + RLLSR P  +AD RNGRD +G  H SG+WL GRTVLN+WR++RSELKL SY+
Sbjct:    3 GRRASGLGLGPHIEAVVVSCEQDLLGAVTVLFRRFDPDIVVGWDVQGGSVGYLLQRSAILDAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXALLRLLSRAPRLDADPRNGRDSYGDDHASGLWLWGRTVLNLWRVLRSELKLQSYA 148          
BLAST of mRNA_H-paniculata_contig24964.6791.1 vs. uniprot
Match: A0A8J4F9P8_9CHLO (DNA polymerase (Fragment) n=2 Tax=Volvox TaxID=3066 RepID=A0A8J4F9P8_9CHLO)

HSP 1 Score: 99.4 bits (246), Expect = 4.860e-20
Identity = 64/166 (38.55%), Postives = 83/166 (50.00%), Query Frame = 0
Query:   76 GSGPTSSSGGGELPGVAAVSRTSQFCLKCGKGKDSADAVGAREGEGRRTFRNGLGKGVKVVEVCSEAQLFRALVGVFCLHDPDFVVGWEVQGDSLGYVIERGLNMEPSMDMTRLLSRTPGREADGRNGRDEWGKTHGSGIWLTGRTVLNMWRLMRSELKLCSYSLQ 241
            GSG   S G  + PG  + S +S     C  G D     G R         +G+  G  V     EA L RA        DPD V+GW+VQ  SLGY+ ER   +  +  + R   RTPG  +     +DEWG  H SG+ LTGR +LN+WR++R ELKL SYS +
Sbjct:    6 GSGADGSPGASDSPGEPSGSSSSSSGPFCPPGVDLGPMRGVR------VRADGVA-GASVEAFTDEAALLRAAAACLSSLDPDIVLGWDVQRHSLGYLAERAAALGLAPPLLRAAGRTPGAASIKERQQDEWGLLHASGLHLTGRILLNLWRVLRGELKLGSYSFE 164          
BLAST of mRNA_H-paniculata_contig24964.6791.1 vs. uniprot
Match: A0A8J4BYM7_9CHLO (DNA polymerase (Fragment) n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4BYM7_9CHLO)

HSP 1 Score: 95.5 bits (236), Expect = 7.880e-19
Identity = 52/121 (42.98%), Postives = 70/121 (57.85%), Query Frame = 0
Query:  121 GRRTFRNGLGKGVKVVEVCSEAQLFRALVGVFCLHDPDFVVGWEVQGDSLGYVIERGLNMEPSMDMTRLLSRTPGREADGRNGRDEWGKTHGSGIWLTGRTVLNMWRLMRSELKLCSYSLQ 241
            G R   +G+ +GV V     EA L RA        DPD ++GW+VQ  SLGY+ ER   +  +  + R   RTPG  +     +DEWG  H SG+ LTGR +LN+WR++R ELKL SYS +
Sbjct:   41 GIRVRADGI-QGVPVEAFPDEAALLRAAAACLSSLDPDIILGWDVQRHSLGYLAERAAVLGLAPPLLRAAGRTPGAASIKERQQDEWGLLHASGLHLTGRILLNLWRVLRGELKLGSYSFE 160          
BLAST of mRNA_H-paniculata_contig24964.6791.1 vs. uniprot
Match: A0A1Y1IS53_KLENI (DNA polymerase zeta catalytic subunit n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IS53_KLENI)

HSP 1 Score: 93.6 bits (231), Expect = 5.390e-18
Identity = 84/275 (30.55%), Postives = 116/275 (42.18%), Query Frame = 0
Query:    1 LTVLSLEIHVQVGSDRRPDPRRDSVHAVCWRVKDAFTSAEREVVEVKTGAIVLPPAETAANVGVRATIGSSRTGPGSGPTSSSGGGELPGVAAVSRTSQFCLKCGKGKDSADAVGAREGEGRRTFRNGLGKGVKVVEVCSEAQLFRALVGVFCLHDPDFVVGWEVQGDSLGYVIERGLNMEPSMDMTRLLSRTP-GREADGRN------------------GR---------------DEWGKTHGSGIWLTGRTVLNMWRLMRSELKLCSYSLQ 241
            LT++S+E+H     D RPDPR D+V  V   + +  TSA  +    +      P  E   +V V                       L    A+S+  Q+         + DA+                 G +VV + SE  L  A V V   +DPD + GWEVQ  S+GY+ ER  ++   + + + LSRTP G   DG +                  GR               DEWG+TH SGI + GR VLN+WRLMR E+KL  YSL+
Sbjct: 2136 LTLMSIEMHAASRGDLRPDPRYDAVGCVVVSIMEDGTSAAEDAASAE------PSGELQEHVLV-----------------------LIVDEALSQDKQY--------RNLDAL----------------PGCEVVYLPSELSLLHAFVAVVRAYDPDILAGWEVQNASVGYLAERAAHL--GLGLLKALSRTPPGGGPDGLDQAPPSGAAEVAGGGWAALGRMDPATALEAEKGIIEDEWGRTHASGIHVVGRVVLNLWRLMRGEIKLHIYSLE 2355          
BLAST of mRNA_H-paniculata_contig24964.6791.1 vs. uniprot
Match: A0A835WRV5_9CHLO (DNA polymerase zeta catalytic subunit n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835WRV5_9CHLO)

HSP 1 Score: 93.2 bits (230), Expect = 7.520e-18
Identity = 46/111 (41.44%), Postives = 61/111 (54.95%), Query Frame = 0
Query:  131 KGVKVVEVCSEAQLFRALVGVFCLHDPDFVVGWEVQGDSLGYVIERGLNMEPSMDMTRLLSRTPGREADGRNGRDEWGKTHGSGIWLTGRTVLNMWRLMRSELKLCSYSLQ 241
            +GV V     E  L RA        DPD   GW+VQ  SLGY+ ER   +  +  + R+  RTPG  +      DEWG  H SG  +TGR +LN+WR++R ELKL SY+ +
Sbjct: 5146 RGVHVEAFADEPSLLRAFAAAVSALDPDICCGWDVQRHSLGYLAERAAALGLAPPLLRVAGRTPGTSSVKERQNDEWGALHASGFHVTGRVLLNLWRVLRGELKLSSYTFE 5256          
BLAST of mRNA_H-paniculata_contig24964.6791.1 vs. uniprot
Match: UPI00201E79EA (uncharacterized protein LOC124140350 n=1 Tax=Haliotis rufescens TaxID=6454 RepID=UPI00201E79EA)

HSP 1 Score: 92.0 bits (227), Expect = 1.850e-17
Identity = 84/256 (32.81%), Postives = 126/256 (49.22%), Query Frame = 0
Query:    1 LTVLSLEIHVQVGSDRRPDPRRDSVHAVCWRVKDAFTSA--EREVVEVKTGAIVLPPAETAANVGVRATIGSSRTGPGSGPTSSSGGGELPGVAAVSRTSQFCLKCGKGKDSADAVGAREGEGRRTFRNGLGK-GVKVVE---VCSEAQLFRALVGVFCLHDPDFVVGWEVQGDSLGYVIERGLNMEPSMDMTRLLSRTPGREADGRN--GRDEWGKTHGSGIWLTGRTVLNMWRLMRSELKLCSYSLQVREFTVL 248
            LTV+S+E+HV+   D RPDP  D++ A+ + + +    A  ER +    TGAIV+  A   A     +     R  P S   S+S                         D ADA  AR    RR   + L K GV+ +    V +E +L  + V +   +DPD VVG+E+Q  S G+V++R  ++    D+  ++SRTP  +   R   G ++WG  + S I +TGR VLN+WRL+R E+ L  YS +   F +L
Sbjct: 3457 LTVMSMEVHVETRGDLRPDPEVDTMQAIFYSIFNDVPPAKGERHI----TGAIVVDVASARAAHMPNSPRPEPR--PVSPKPSTSRAQPEXXXXXXXXXXXXXXXXXXXXDEADASLART---RRQTASILKKSGVEDINTEYVTNETELVESFVKLIHKYDPDIVVGYEIQMLSWGFVLQRATHL--GTDLCTMISRTPDSKVGNRAKAGGNDWGSDYTSEINITGRIVLNLWRLLRHEVTLNIYSFENTAFHIL 3701          
BLAST of mRNA_H-paniculata_contig24964.6791.1 vs. uniprot
Match: A0A2K3DDR6_CHLRE (DNA polymerase zeta catalytic subunit n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3DDR6_CHLRE)

HSP 1 Score: 92.0 bits (227), Expect = 1.870e-17
Identity = 47/111 (42.34%), Postives = 61/111 (54.95%), Query Frame = 0
Query:  131 KGVKVVEVCSEAQLFRALVGVFCLHDPDFVVGWEVQGDSLGYVIERGLNMEPSMDMTRLLSRTPGREADGRNGRDEWGKTHGSGIWLTGRTVLNMWRLMRSELKLCSYSLQ 241
            +GV V     E  L RA        DPD V GW+VQ  SLGY+ ER   +  +  + R   RTPG  +      DEWG  H SG  +TGR +LN+WR++R ELKL SY+ +
Sbjct: 5239 RGVHVEAFPDEPSLLRAFAAALSSLDPDVVCGWDVQRHSLGYLAERAAALGLAPPLLRAAGRTPGTSSVKERQNDEWGALHASGFHVTGRVLLNLWRVLRGELKLGSYTFE 5349          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24964.6791.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L0N9_9PHAE5.190e-9465.90DNA polymerase zeta catalytic subunit n=1 Tax=Ecto... [more]
D7G846_ECTSI1.000e-9164.48DNA polymerase zeta catalytic subunit n=1 Tax=Ecto... [more]
A0A7S0NX68_9EUKA9.200e-2443.14Hypothetical protein (Fragment) n=1 Tax=Calcidiscu... [more]
A0A835YMN6_9STRA2.240e-2341.78DNA polymerase n=1 Tax=Tribonema minus TaxID=30337... [more]
A0A8J4F9P8_9CHLO4.860e-2038.55DNA polymerase (Fragment) n=2 Tax=Volvox TaxID=306... [more]
A0A8J4BYM7_9CHLO7.880e-1942.98DNA polymerase (Fragment) n=1 Tax=Volvox reticulif... [more]
A0A1Y1IS53_KLENI5.390e-1830.55DNA polymerase zeta catalytic subunit n=1 Tax=Kleb... [more]
A0A835WRV5_9CHLO7.520e-1841.44DNA polymerase zeta catalytic subunit n=1 Tax=Chla... [more]
UPI00201E79EA1.850e-1732.81uncharacterized protein LOC124140350 n=1 Tax=Halio... [more]
A0A2K3DDR6_CHLRE1.870e-1742.34DNA polymerase zeta catalytic subunit n=1 Tax=Chla... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 121..248
e-value: 4.5E-19
score: 70.6
IPR006133DNA-directed DNA polymerase, family B, exonuclease domainPFAMPF03104DNA_pol_B_exo1coord: 129..241
e-value: 1.1E-6
score: 28.0
IPR030559DNA polymerase zeta catalytic subunitPANTHERPTHR45812FAMILY NOT NAMEDcoord: 1..248
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 1..240

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24964contigH-paniculata_contig24964:1712..3305 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24964.6791.1mRNA_H-paniculata_contig24964.6791.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig24964 1712..3305 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig24964.6791.1 ID=prot_H-paniculata_contig24964.6791.1|Name=mRNA_H-paniculata_contig24964.6791.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=250bp
LTVLSLEIHVQVGSDRRPDPRRDSVHAVCWRVKDAFTSAEREVVEVKTGA
IVLPPAETAANVGVRATIGSSRTGPGSGPTSSSGGGELPGVAAVSRTSQF
CLKCGKGKDSADAVGAREGEGRRTFRNGLGKGVKVVEVCSEAQLFRALVG
VFCLHDPDFVVGWEVQGDSLGYVIERGLNMEPSMDMTRLLSRTPGREADG
RNGRDEWGKTHGSGIWLTGRTVLNMWRLMRSELKLCSYSLQVREFTVLW*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036397RNaseH_sf
IPR006133DNA-dir_DNA_pol_B_exonuc
IPR030559PolZ_Rev3
IPR012337RNaseH-like_sf