mRNA_H-paniculata_contig24964.6791.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig24964.6791.1 vs. uniprot
Match: A0A6H5L0N9_9PHAE (DNA polymerase zeta catalytic subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0N9_9PHAE) HSP 1 Score: 312 bits (799), Expect = 5.190e-94 Identity = 172/261 (65.90%), Postives = 186/261 (71.26%), Query Frame = 1
Query: 1 LTVLSLEIHVQVGSDRRPDPRRDSVHAVCWRVKDAFTSAEREVVEVKTGAIVLPPAETAANVGVRATIGSSRTGPGSGPTSSSGGGELPG--VAAVSRTSQFCLKCGKGKDS------------------ADAVGAREGEGRRTFRNGLGKGVKVVEVCSEAQLFRALVGVFCLHDPDFVVGWEVQGDSLGYVIERGLNMEPSMDMTRLLSRTPGREADGRNGRDEWGKTHGSGIWLTGRTVLNMWRLMRSELKLCSYSLQ 723
LTVLSLE+HVQV + RRPDPRRD VHAVCWRVKDAFTSAERE VE +G IVLP A A V V A + SGGG+ G A SR + CLKCG+ +D A G GR TFR+GLGK V+V+EVCSE Q+FRALV VFC HDPDFV GWEVQGDSLGYVIERGLNMEPSMDMTRLLSRTPGR+AD RN RDEWGKTHGSGIWLTGRTVLNMWRLMRSELKLCSY+LQ
Sbjct: 1940 LTVLSLELHVQVPASRRPDPRRDCVHAVCWRVKDAFTSAERETVETTSGVIVLPLA--ARGVAVPAAA------------AGSGGGDRNGGHSAEGSREEEACLKCGERRDDVNRAFCCFEGGGFLGQGIASGGGTEVETGRATFRHGLGKDVEVLEVCSEEQVFRALVRVFCRHDPDFVAGWEVQGDSLGYVIERGLNMEPSMDMTRLLSRTPGRDADKRNARDEWGKTHGSGIWLTGRTVLNMWRLMRSELKLCSYTLQ 2186
BLAST of mRNA_H-paniculata_contig24964.6791.1 vs. uniprot
Match: D7G846_ECTSI (DNA polymerase zeta catalytic subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G846_ECTSI) HSP 1 Score: 305 bits (782), Expect = 1.000e-91 Identity = 167/259 (64.48%), Postives = 182/259 (70.27%), Query Frame = 1
Query: 1 LTVLSLEIHVQVGSDRRPDPRRDSVHAVCWRVKDAFTSAEREVVEVKTGAIVLPPAETAANVGVRATIGSSRTGPGSGPTSSSGGGELPGVAAVSRTSQFCLKCGKGKDS------------------ADAVGAREGEGRRTFRNGLGKGVKVVEVCSEAQLFRALVGVFCLHDPDFVVGWEVQGDSLGYVIERGLNMEPSMDMTRLLSRTPGREADGRNGRDEWGKTHGSGIWLTGRTVLNMWRLMRSELKLCSYSLQ 723
LTVLSLE+HVQV + RRPDPRRD VHAVCWRVKDAFTSAERE VE ++G IVLP A GV AT S G SR + CLKCG+ +D A G GR T R+GLG+ V+V+EVCSE Q+FRALVGVFC HDPDFVVGWEVQGDSLGYV+ERGLNMEPSMDMTRLLSRTPGR+AD RN RDEWGKTHGSGIWLTGRTVLNMWRLMRSELKLCSY+LQ
Sbjct: 2045 LTVLSLELHVQVPASRRPDPRRDCVHAVCWRVKDAFTSAEREAVETRSGVIVLPLAAR----GVAATSXXXXXXXXXXXXXDSADG--------SRKEEACLKCGEQRDDVNRAFCCFEGGGFLGQGIASGGGTEVETGRATLRHGLGRDVEVLEVCSEEQVFRALVGVFCRHDPDFVVGWEVQGDSLGYVVERGLNMEPSMDMTRLLSRTPGRDADKRNARDEWGKTHGSGIWLTGRTVLNMWRLMRSELKLCSYTLQ 2291
BLAST of mRNA_H-paniculata_contig24964.6791.1 vs. uniprot
Match: A0A7S0NX68_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NX68_9EUKA) HSP 1 Score: 102 bits (255), Expect = 9.200e-24 Identity = 66/153 (43.14%), Postives = 85/153 (55.56%), Query Frame = 1
Query: 274 AAVSRTSQFCLKCGKGKDSADAVGAREGEGRRTFRNGLGKGVKVVEVC-SEAQLFRALVGVFCLHDPDFVVGWEVQGDSLGYVIERG--LNMEPSMDMTRLLSRTPGREADGRNGRDEWGKTHGSGIWLTGRTVLNMWRLMRSELKLCSYSLQ 723
A V R S L+ G A AR G +G +VE SE L RALVGV +D D +VGW+++ S+GY+IER L MEP + R L RTP E RD WG++ +GI LTGR +LN+WR +SELKLCSY+L+
Sbjct: 3 APVRRESGVLLRTDDGARPWTAAAARRARG--ILAPSVGGAELMVEAHGSEEALLRALVGVVHRYDADMLVGWDLRRASIGYLIERANALKMEPPL--LRQLGRTPTHEGQNERSRDTWGESVATGIHLTGRVLLNLWRCAKSELKLCSYTLE 151
BLAST of mRNA_H-paniculata_contig24964.6791.1 vs. uniprot
Match: A0A835YMN6_9STRA (DNA polymerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMN6_9STRA) HSP 1 Score: 108 bits (271), Expect = 2.240e-23 Identity = 61/146 (41.78%), Postives = 81/146 (55.48%), Query Frame = 1
Query: 361 GRRTFRNGLGKGVKVVEVCSEAQLFRALVGVFCLHDPDFVVGWEVQGDSLGYVIERGLNMEPSMD---------------------------MTRLLSRTPGREADGRNGRDEWGKTHGSGIWLTGRTVLNMWRLMRSELKLCSYS 717
GRR GLG ++ V V E L A+ +F DPD VVGW+VQG S+GY+++R ++ + + RLLSR P +AD RNGRD +G H SG+WL GRTVLN+WR++RSELKL SY+
Sbjct: 3 GRRASGLGLGPHIEAVVVSCEQDLLGAVTVLFRRFDPDIVVGWDVQGGSVGYLLQRSAILDAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXALLRLLSRAPRLDADPRNGRDSYGDDHASGLWLWGRTVLNLWRVLRSELKLQSYA 148
BLAST of mRNA_H-paniculata_contig24964.6791.1 vs. uniprot
Match: A0A8J4F9P8_9CHLO (DNA polymerase (Fragment) n=2 Tax=Volvox TaxID=3066 RepID=A0A8J4F9P8_9CHLO) HSP 1 Score: 99.4 bits (246), Expect = 4.860e-20 Identity = 64/166 (38.55%), Postives = 83/166 (50.00%), Query Frame = 1
Query: 226 GSGPTSSSGGGELPGVAAVSRTSQFCLKCGKGKDSADAVGAREGEGRRTFRNGLGKGVKVVEVCSEAQLFRALVGVFCLHDPDFVVGWEVQGDSLGYVIERGLNMEPSMDMTRLLSRTPGREADGRNGRDEWGKTHGSGIWLTGRTVLNMWRLMRSELKLCSYSLQ 723
GSG S G + PG + S +S C G D G R +G+ G V EA L RA DPD V+GW+VQ SLGY+ ER + + + R RTPG + +DEWG H SG+ LTGR +LN+WR++R ELKL SYS +
Sbjct: 6 GSGADGSPGASDSPGEPSGSSSSSSGPFCPPGVDLGPMRGVR------VRADGVA-GASVEAFTDEAALLRAAAACLSSLDPDIVLGWDVQRHSLGYLAERAAALGLAPPLLRAAGRTPGAASIKERQQDEWGLLHASGLHLTGRILLNLWRVLRGELKLGSYSFE 164
BLAST of mRNA_H-paniculata_contig24964.6791.1 vs. uniprot
Match: A0A8J4BYM7_9CHLO (DNA polymerase (Fragment) n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4BYM7_9CHLO) HSP 1 Score: 95.5 bits (236), Expect = 7.880e-19 Identity = 52/121 (42.98%), Postives = 70/121 (57.85%), Query Frame = 1
Query: 361 GRRTFRNGLGKGVKVVEVCSEAQLFRALVGVFCLHDPDFVVGWEVQGDSLGYVIERGLNMEPSMDMTRLLSRTPGREADGRNGRDEWGKTHGSGIWLTGRTVLNMWRLMRSELKLCSYSLQ 723
G R +G+ +GV V EA L RA DPD ++GW+VQ SLGY+ ER + + + R RTPG + +DEWG H SG+ LTGR +LN+WR++R ELKL SYS +
Sbjct: 41 GIRVRADGI-QGVPVEAFPDEAALLRAAAACLSSLDPDIILGWDVQRHSLGYLAERAAVLGLAPPLLRAAGRTPGAASIKERQQDEWGLLHASGLHLTGRILLNLWRVLRGELKLGSYSFE 160
BLAST of mRNA_H-paniculata_contig24964.6791.1 vs. uniprot
Match: A0A1Y1IS53_KLENI (DNA polymerase zeta catalytic subunit n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IS53_KLENI) HSP 1 Score: 93.6 bits (231), Expect = 5.390e-18 Identity = 84/275 (30.55%), Postives = 116/275 (42.18%), Query Frame = 1
Query: 1 LTVLSLEIHVQVGSDRRPDPRRDSVHAVCWRVKDAFTSAEREVVEVKTGAIVLPPAETAANVGVRATIGSSRTGPGSGPTSSSGGGELPGVAAVSRTSQFCLKCGKGKDSADAVGAREGEGRRTFRNGLGKGVKVVEVCSEAQLFRALVGVFCLHDPDFVVGWEVQGDSLGYVIERGLNMEPSMDMTRLLSRTP-GREADGRN------------------GR---------------DEWGKTHGSGIWLTGRTVLNMWRLMRSELKLCSYSLQ 723
LT++S+E+H D RPDPR D+V V + + TSA + + P E +V V L A+S+ Q+ + DA+ G +VV + SE L A V V +DPD + GWEVQ S+GY+ ER ++ + + + LSRTP G DG + GR DEWG+TH SGI + GR VLN+WRLMR E+KL YSL+
Sbjct: 2136 LTLMSIEMHAASRGDLRPDPRYDAVGCVVVSIMEDGTSAAEDAASAE------PSGELQEHVLV-----------------------LIVDEALSQDKQY--------RNLDAL----------------PGCEVVYLPSELSLLHAFVAVVRAYDPDILAGWEVQNASVGYLAERAAHL--GLGLLKALSRTPPGGGPDGLDQAPPSGAAEVAGGGWAALGRMDPATALEAEKGIIEDEWGRTHASGIHVVGRVVLNLWRLMRGEIKLHIYSLE 2355
BLAST of mRNA_H-paniculata_contig24964.6791.1 vs. uniprot
Match: A0A835WRV5_9CHLO (DNA polymerase zeta catalytic subunit n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835WRV5_9CHLO) HSP 1 Score: 93.2 bits (230), Expect = 7.520e-18 Identity = 46/111 (41.44%), Postives = 61/111 (54.95%), Query Frame = 1
Query: 391 KGVKVVEVCSEAQLFRALVGVFCLHDPDFVVGWEVQGDSLGYVIERGLNMEPSMDMTRLLSRTPGREADGRNGRDEWGKTHGSGIWLTGRTVLNMWRLMRSELKLCSYSLQ 723
+GV V E L RA DPD GW+VQ SLGY+ ER + + + R+ RTPG + DEWG H SG +TGR +LN+WR++R ELKL SY+ +
Sbjct: 5146 RGVHVEAFADEPSLLRAFAAAVSALDPDICCGWDVQRHSLGYLAERAAALGLAPPLLRVAGRTPGTSSVKERQNDEWGALHASGFHVTGRVLLNLWRVLRGELKLSSYTFE 5256
BLAST of mRNA_H-paniculata_contig24964.6791.1 vs. uniprot
Match: UPI00201E79EA (uncharacterized protein LOC124140350 n=1 Tax=Haliotis rufescens TaxID=6454 RepID=UPI00201E79EA) HSP 1 Score: 92.0 bits (227), Expect = 1.850e-17 Identity = 84/256 (32.81%), Postives = 126/256 (49.22%), Query Frame = 1
Query: 1 LTVLSLEIHVQVGSDRRPDPRRDSVHAVCWRVKDAFTSA--EREVVEVKTGAIVLPPAETAANVGVRATIGSSRTGPGSGPTSSSGGGELPGVAAVSRTSQFCLKCGKGKDSADAVGAREGEGRRTFRNGLGK-GVKVVE---VCSEAQLFRALVGVFCLHDPDFVVGWEVQGDSLGYVIERGLNMEPSMDMTRLLSRTPGREADGRN--GRDEWGKTHGSGIWLTGRTVLNMWRLMRSELKLCSYSLQVREFTVL 744
LTV+S+E+HV+ D RPDP D++ A+ + + + A ER + TGAIV+ A A + R P S S+S D ADA AR RR + L K GV+ + V +E +L + V + +DPD VVG+E+Q S G+V++R ++ D+ ++SRTP + R G ++WG + S I +TGR VLN+WRL+R E+ L YS + F +L
Sbjct: 3457 LTVMSMEVHVETRGDLRPDPEVDTMQAIFYSIFNDVPPAKGERHI----TGAIVVDVASARAAHMPNSPRPEPR--PVSPKPSTSRAQPEXXXXXXXXXXXXXXXXXXXXDEADASLART---RRQTASILKKSGVEDINTEYVTNETELVESFVKLIHKYDPDIVVGYEIQMLSWGFVLQRATHL--GTDLCTMISRTPDSKVGNRAKAGGNDWGSDYTSEINITGRIVLNLWRLLRHEVTLNIYSFENTAFHIL 3701
BLAST of mRNA_H-paniculata_contig24964.6791.1 vs. uniprot
Match: A0A2K3DDR6_CHLRE (DNA polymerase zeta catalytic subunit n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3DDR6_CHLRE) HSP 1 Score: 92.0 bits (227), Expect = 1.870e-17 Identity = 47/111 (42.34%), Postives = 61/111 (54.95%), Query Frame = 1
Query: 391 KGVKVVEVCSEAQLFRALVGVFCLHDPDFVVGWEVQGDSLGYVIERGLNMEPSMDMTRLLSRTPGREADGRNGRDEWGKTHGSGIWLTGRTVLNMWRLMRSELKLCSYSLQ 723
+GV V E L RA DPD V GW+VQ SLGY+ ER + + + R RTPG + DEWG H SG +TGR +LN+WR++R ELKL SY+ +
Sbjct: 5239 RGVHVEAFPDEPSLLRAFAAALSSLDPDVVCGWDVQRHSLGYLAERAAALGLAPPLLRAAGRTPGTSSVKERQNDEWGALHASGFHVTGRVLLNLWRVLRGELKLGSYTFE 5349 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24964.6791.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig24964.6791.1 >prot_H-paniculata_contig24964.6791.1 ID=prot_H-paniculata_contig24964.6791.1|Name=mRNA_H-paniculata_contig24964.6791.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=250bp LTVLSLEIHVQVGSDRRPDPRRDSVHAVCWRVKDAFTSAEREVVEVKTGAback to top mRNA from alignment at H-paniculata_contig24964:1712..3305+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig24964.6791.1 ID=mRNA_H-paniculata_contig24964.6791.1|Name=mRNA_H-paniculata_contig24964.6791.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1594bp|location=Sequence derived from alignment at H-paniculata_contig24964:1712..3305+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig24964:1712..3305+ >mRNA_H-paniculata_contig24964.6791.1 ID=mRNA_H-paniculata_contig24964.6791.1|Name=mRNA_H-paniculata_contig24964.6791.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1500bp|location=Sequence derived from alignment at H-paniculata_contig24964:1712..3305+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |