mRNA_H-paniculata_contig2491.6770.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2491.6770.1 vs. uniprot
Match: D7FJK2_ECTSI (Similar to ribosomal protein S29 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJK2_ECTSI) HSP 1 Score: 117 bits (292), Expect = 2.150e-27 Identity = 51/57 (89.47%), Postives = 54/57 (94.74%), Query Frame = 2
Query: 2030 TMGSKALVNSHPKKYGKGGRHCRVCSNQHGLIRKYGLNMCRQCFRIYANDIGFTKFS 2200
TMGSKALVNSHPK +GKGGRHCRVCSNQHGLIRKYGL MCRQCFR+YA +IGFTKFS
Sbjct: 42 TMGSKALVNSHPKSFGKGGRHCRVCSNQHGLIRKYGLYMCRQCFRVYATEIGFTKFS 98
BLAST of mRNA_H-paniculata_contig2491.6770.1 vs. uniprot
Match: A0A835YKD0_9STRA (Putative 40S ribosomal protein RPS29 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKD0_9STRA) HSP 1 Score: 100 bits (250), Expect = 3.050e-22 Identity = 43/56 (76.79%), Postives = 48/56 (85.71%), Query Frame = 2
Query: 2033 MGSKALVNSHPKKYGKGGRHCRVCSNQHGLIRKYGLNMCRQCFRIYANDIGFTKFS 2200
MG+KAL NSHPK YGKGG CRVC+NQHG+I+KYG+NMCRQCFR YA DIGF K S
Sbjct: 1 MGAKALQNSHPKAYGKGGNKCRVCANQHGIIKKYGINMCRQCFRTYAYDIGFHKLS 56
BLAST of mRNA_H-paniculata_contig2491.6770.1 vs. uniprot
Match: A0A673W605_SALTR (40S ribosomal protein S29 n=4 Tax=Salmoninae TaxID=504568 RepID=A0A673W605_SALTR) HSP 1 Score: 97.8 bits (242), Expect = 1.020e-20 Identity = 42/57 (73.68%), Postives = 49/57 (85.96%), Query Frame = 2
Query: 2024 KDTMGSKALVNSHPKKYGKGGRHCRVCSNQHGLIRKYGLNMCRQCFRIYANDIGFTK 2194
+D MG ++L SHP+K+G+G R CRVCSN+HGLIRKYGLNMCRQCFR YANDIGF K
Sbjct: 34 RDKMGHQSLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYANDIGFVK 90
BLAST of mRNA_H-paniculata_contig2491.6770.1 vs. uniprot
Match: A0A4W5PZW5_9TELE (40S ribosomal protein S29 n=1 Tax=Hucho hucho TaxID=62062 RepID=A0A4W5PZW5_9TELE) HSP 1 Score: 98.6 bits (244), Expect = 1.280e-20 Identity = 43/59 (72.88%), Postives = 50/59 (84.75%), Query Frame = 2
Query: 2024 KDTMGSKALVNSHPKKYGKGGRHCRVCSNQHGLIRKYGLNMCRQCFRIYANDIGFTKFS 2200
+D MG ++L SHP+K+G+G R CRVCSN+HGLIRKYGLNMCRQCFR YANDIGF K S
Sbjct: 42 RDKMGHQSLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYANDIGFVKAS 100
BLAST of mRNA_H-paniculata_contig2491.6770.1 vs. uniprot
Match: A0A060XL70_ONCMY (40S ribosomal protein S29 n=2 Tax=Oncorhynchus TaxID=8016 RepID=A0A060XL70_ONCMY) HSP 1 Score: 96.3 bits (238), Expect = 1.720e-20 Identity = 42/56 (75.00%), Postives = 48/56 (85.71%), Query Frame = 2
Query: 2033 MGSKALVNSHPKKYGKGGRHCRVCSNQHGLIRKYGLNMCRQCFRIYANDIGFTKFS 2200
MG ++L SHP+K+G+G R CRVCSN+HGLIRKYGLNMCRQCFR YANDIGF K S
Sbjct: 1 MGHQSLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYANDIGFVKAS 56
BLAST of mRNA_H-paniculata_contig2491.6770.1 vs. uniprot
Match: A0A7J7QR56_9CHLO (40S ribosomal protein S29 (Fragment) n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7QR56_9CHLO) HSP 1 Score: 95.5 bits (236), Expect = 2.270e-20 Identity = 42/54 (77.78%), Postives = 46/54 (85.19%), Query Frame = 2
Query: 2033 MGSKALVNSHPKKYGKGGRHCRVCSNQHGLIRKYGLNMCRQCFRIYANDIGFTK 2194
MG +A+ NSHPK YGKGGR CRVCSNQ G+IRKY LN+CRQCFR YANDIGF K
Sbjct: 1 MGHEAVWNSHPKDYGKGGRKCRVCSNQGGIIRKYNLNICRQCFREYANDIGFIK 54
BLAST of mRNA_H-paniculata_contig2491.6770.1 vs. uniprot
Match: B0Z9R4_9BILA (40S ribosomal protein S29 n=2 Tax=Lineidae TaxID=6222 RepID=B0Z9R4_9BILA) HSP 1 Score: 95.5 bits (236), Expect = 2.390e-20 Identity = 42/54 (77.78%), Postives = 46/54 (85.19%), Query Frame = 2
Query: 2033 MGSKALVNSHPKKYGKGGRHCRVCSNQHGLIRKYGLNMCRQCFRIYANDIGFTK 2194
MG + NSHPKK+G+G R CRVCSN+HGLIRKYGLNMCRQCFR YANDIGF K
Sbjct: 1 MGFANIWNSHPKKFGQGSRCCRVCSNRHGLIRKYGLNMCRQCFRQYANDIGFKK 54
BLAST of mRNA_H-paniculata_contig2491.6770.1 vs. uniprot
Match: G7YKF2_CLOSI (40S ribosomal protein S29 n=3 Tax=Digenea TaxID=6179 RepID=G7YKF2_CLOSI) HSP 1 Score: 95.5 bits (236), Expect = 2.390e-20 Identity = 41/54 (75.93%), Postives = 46/54 (85.19%), Query Frame = 2
Query: 2033 MGSKALVNSHPKKYGKGGRHCRVCSNQHGLIRKYGLNMCRQCFRIYANDIGFTK 2194
MG + +SHPK YG+G RHCRVCSN+HGLIRKYGLNMCRQCFR+YAN IGF K
Sbjct: 1 MGHANIWHSHPKDYGQGSRHCRVCSNRHGLIRKYGLNMCRQCFRMYANVIGFRK 54
BLAST of mRNA_H-paniculata_contig2491.6770.1 vs. uniprot
Match: A0A667XG56_9TELE (40S ribosomal protein S29 n=4 Tax=Euacanthomorphacea TaxID=123369 RepID=A0A667XG56_9TELE) HSP 1 Score: 96.3 bits (238), Expect = 3.050e-20 Identity = 43/61 (70.49%), Postives = 49/61 (80.33%), Query Frame = 2
Query: 2012 RHSFKDTMGSKALVNSHPKKYGKGGRHCRVCSNQHGLIRKYGLNMCRQCFRIYANDIGFTK 2194
R S +D MG + L SHP+K+G+G R CRVCSN+HGLIRKYGLNMCRQCFR YA DIGF K
Sbjct: 25 RSSERDKMGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFVK 85
BLAST of mRNA_H-paniculata_contig2491.6770.1 vs. uniprot
Match: A0A672KKC5_SINGR (40S ribosomal protein S29 n=3 Tax=Cyprininae TaxID=2743694 RepID=A0A672KKC5_SINGR) HSP 1 Score: 97.4 bits (241), Expect = 3.350e-20 Identity = 44/63 (69.84%), Postives = 50/63 (79.37%), Query Frame = 2
Query: 2024 KDTMGSKALVNSHPKKYGKGGRHCRVCSNQHGLIRKYGLNMCRQCFRIYANDIGFTKFS*ASF 2212
+D MG + L SHP+KYG+G R CRVCSN+HGLIRKYGLNMCRQCFR YA DIGF K S +F
Sbjct: 60 RDEMGHQQLYWSHPRKYGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFVKASVHAF 122 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2491.6770.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2491.6770.1 >prot_H-paniculata_contig2491.6770.1 ID=prot_H-paniculata_contig2491.6770.1|Name=mRNA_H-paniculata_contig2491.6770.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=57bp MGSKALVNSHPKKYGKGGRHCRVCSNQHGLIRKYGLNMCRQCFRIYANDIback to top mRNA from alignment at H-paniculata_contig2491:16898..20435+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2491.6770.1 ID=mRNA_H-paniculata_contig2491.6770.1|Name=mRNA_H-paniculata_contig2491.6770.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3538bp|location=Sequence derived from alignment at H-paniculata_contig2491:16898..20435+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2491:16898..20435+ >mRNA_H-paniculata_contig2491.6770.1 ID=mRNA_H-paniculata_contig2491.6770.1|Name=mRNA_H-paniculata_contig2491.6770.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=342bp|location=Sequence derived from alignment at H-paniculata_contig2491:16898..20435+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |