prot_H-paniculata_contig2491.6770.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig2491.6770.1
Unique Nameprot_H-paniculata_contig2491.6770.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length57
Homology
BLAST of mRNA_H-paniculata_contig2491.6770.1 vs. uniprot
Match: D7FJK2_ECTSI (Similar to ribosomal protein S29 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJK2_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 1.320e-32
Identity = 50/56 (89.29%), Postives = 53/56 (94.64%), Query Frame = 0
Query:    1 MGSKALVNSHPKKYGKGGRHCRVCSNQHGLIRKYGLNMCRQCFRIYANDIGFTKFS 56
            MGSKALVNSHPK +GKGGRHCRVCSNQHGLIRKYGL MCRQCFR+YA +IGFTKFS
Sbjct:   43 MGSKALVNSHPKSFGKGGRHCRVCSNQHGLIRKYGLYMCRQCFRVYATEIGFTKFS 98          
BLAST of mRNA_H-paniculata_contig2491.6770.1 vs. uniprot
Match: A0A835YKD0_9STRA (Putative 40S ribosomal protein RPS29 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKD0_9STRA)

HSP 1 Score: 102 bits (253), Expect = 1.820e-27
Identity = 43/56 (76.79%), Postives = 48/56 (85.71%), Query Frame = 0
Query:    1 MGSKALVNSHPKKYGKGGRHCRVCSNQHGLIRKYGLNMCRQCFRIYANDIGFTKFS 56
            MG+KAL NSHPK YGKGG  CRVC+NQHG+I+KYG+NMCRQCFR YA DIGF K S
Sbjct:    1 MGAKALQNSHPKAYGKGGNKCRVCANQHGIIKKYGINMCRQCFRTYAYDIGFHKLS 56          
BLAST of mRNA_H-paniculata_contig2491.6770.1 vs. uniprot
Match: A0A060XL70_ONCMY (40S ribosomal protein S29 n=2 Tax=Oncorhynchus TaxID=8016 RepID=A0A060XL70_ONCMY)

HSP 1 Score: 97.4 bits (241), Expect = 1.650e-25
Identity = 42/56 (75.00%), Postives = 48/56 (85.71%), Query Frame = 0
Query:    1 MGSKALVNSHPKKYGKGGRHCRVCSNQHGLIRKYGLNMCRQCFRIYANDIGFTKFS 56
            MG ++L  SHP+K+G+G R CRVCSN+HGLIRKYGLNMCRQCFR YANDIGF K S
Sbjct:    1 MGHQSLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYANDIGFVKAS 56          
BLAST of mRNA_H-paniculata_contig2491.6770.1 vs. uniprot
Match: A0A7J7QR56_9CHLO (40S ribosomal protein S29 (Fragment) n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7QR56_9CHLO)

HSP 1 Score: 96.7 bits (239), Expect = 2.380e-25
Identity = 42/54 (77.78%), Postives = 46/54 (85.19%), Query Frame = 0
Query:    1 MGSKALVNSHPKKYGKGGRHCRVCSNQHGLIRKYGLNMCRQCFRIYANDIGFTK 54
            MG +A+ NSHPK YGKGGR CRVCSNQ G+IRKY LN+CRQCFR YANDIGF K
Sbjct:    1 MGHEAVWNSHPKDYGKGGRKCRVCSNQGGIIRKYNLNICRQCFREYANDIGFIK 54          
BLAST of mRNA_H-paniculata_contig2491.6770.1 vs. uniprot
Match: B0Z9R4_9BILA (40S ribosomal protein S29 n=2 Tax=Lineidae TaxID=6222 RepID=B0Z9R4_9BILA)

HSP 1 Score: 96.7 bits (239), Expect = 2.500e-25
Identity = 42/54 (77.78%), Postives = 46/54 (85.19%), Query Frame = 0
Query:    1 MGSKALVNSHPKKYGKGGRHCRVCSNQHGLIRKYGLNMCRQCFRIYANDIGFTK 54
            MG   + NSHPKK+G+G R CRVCSN+HGLIRKYGLNMCRQCFR YANDIGF K
Sbjct:    1 MGFANIWNSHPKKFGQGSRCCRVCSNRHGLIRKYGLNMCRQCFRQYANDIGFKK 54          
BLAST of mRNA_H-paniculata_contig2491.6770.1 vs. uniprot
Match: G7YKF2_CLOSI (40S ribosomal protein S29 n=3 Tax=Digenea TaxID=6179 RepID=G7YKF2_CLOSI)

HSP 1 Score: 96.7 bits (239), Expect = 2.500e-25
Identity = 41/54 (75.93%), Postives = 46/54 (85.19%), Query Frame = 0
Query:    1 MGSKALVNSHPKKYGKGGRHCRVCSNQHGLIRKYGLNMCRQCFRIYANDIGFTK 54
            MG   + +SHPK YG+G RHCRVCSN+HGLIRKYGLNMCRQCFR+YAN IGF K
Sbjct:    1 MGHANIWHSHPKDYGQGSRHCRVCSNRHGLIRKYGLNMCRQCFRMYANVIGFRK 54          
BLAST of mRNA_H-paniculata_contig2491.6770.1 vs. uniprot
Match: B5DFW3_SALSA (40S ribosomal protein S29 n=3 Tax=Protacanthopterygii TaxID=41705 RepID=B5DFW3_SALSA)

HSP 1 Score: 95.9 bits (237), Expect = 5.060e-25
Identity = 41/54 (75.93%), Postives = 46/54 (85.19%), Query Frame = 0
Query:    1 MGSKALVNSHPKKYGKGGRHCRVCSNQHGLIRKYGLNMCRQCFRIYANDIGFTK 54
            MG + L  SHP+K+G+G R CRVCSN+HGLIRKYGLNMCRQCFR YANDIGF K
Sbjct:    1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYANDIGFVK 54          
BLAST of mRNA_H-paniculata_contig2491.6770.1 vs. uniprot
Match: A0A8C1M080_CYPCA (40S ribosomal protein S29 n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1M080_CYPCA)

HSP 1 Score: 95.9 bits (237), Expect = 6.360e-25
Identity = 42/56 (75.00%), Postives = 46/56 (82.14%), Query Frame = 0
Query:    1 MGSKALVNSHPKKYGKGGRHCRVCSNQHGLIRKYGLNMCRQCFRIYANDIGFTKFS 56
            MG + L  SHP+KYG+G R CRVCSN+HGLIRKYGLNMCRQCFR YA DIGF K S
Sbjct:    1 MGHQQLYWSHPRKYGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFVKAS 56          
BLAST of mRNA_H-paniculata_contig2491.6770.1 vs. uniprot
Match: A0A673W605_SALTR (40S ribosomal protein S29 n=4 Tax=Salmoninae TaxID=504568 RepID=A0A673W605_SALTR)

HSP 1 Score: 96.7 bits (239), Expect = 6.610e-25
Identity = 41/54 (75.93%), Postives = 47/54 (87.04%), Query Frame = 0
Query:    1 MGSKALVNSHPKKYGKGGRHCRVCSNQHGLIRKYGLNMCRQCFRIYANDIGFTK 54
            MG ++L  SHP+K+G+G R CRVCSN+HGLIRKYGLNMCRQCFR YANDIGF K
Sbjct:   37 MGHQSLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYANDIGFVK 90          
BLAST of mRNA_H-paniculata_contig2491.6770.1 vs. uniprot
Match: A0A8C7IQZ2_ONCKI (40S ribosomal protein S29 n=4 Tax=Salmoninae TaxID=504568 RepID=A0A8C7IQZ2_ONCKI)

HSP 1 Score: 95.9 bits (237), Expect = 6.710e-25
Identity = 41/54 (75.93%), Postives = 46/54 (85.19%), Query Frame = 0
Query:    1 MGSKALVNSHPKKYGKGGRHCRVCSNQHGLIRKYGLNMCRQCFRIYANDIGFTK 54
            MG + L  SHP+K+G+G R CRVCSN+HGLIRKYGLNMCRQCFR YANDIGF K
Sbjct:    1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYANDIGFVK 54          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2491.6770.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJK2_ECTSI1.320e-3289.29Similar to ribosomal protein S29 n=1 Tax=Ectocarpu... [more]
A0A835YKD0_9STRA1.820e-2776.79Putative 40S ribosomal protein RPS29 n=1 Tax=Tribo... [more]
A0A060XL70_ONCMY1.650e-2575.0040S ribosomal protein S29 n=2 Tax=Oncorhynchus Tax... [more]
A0A7J7QR56_9CHLO2.380e-2577.7840S ribosomal protein S29 (Fragment) n=1 Tax=Scene... [more]
B0Z9R4_9BILA2.500e-2577.7840S ribosomal protein S29 n=2 Tax=Lineidae TaxID=6... [more]
G7YKF2_CLOSI2.500e-2575.9340S ribosomal protein S29 n=3 Tax=Digenea TaxID=61... [more]
B5DFW3_SALSA5.060e-2575.9340S ribosomal protein S29 n=3 Tax=Protacanthoptery... [more]
A0A8C1M080_CYPCA6.360e-2575.0040S ribosomal protein S29 n=1 Tax=Cyprinus carpio ... [more]
A0A673W605_SALTR6.610e-2575.9340S ribosomal protein S29 n=4 Tax=Salmoninae TaxID... [more]
A0A8C7IQZ2_ONCKI6.710e-2575.9340S ribosomal protein S29 n=4 Tax=Salmoninae TaxID... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D4.10.830.10coord: 1..56
e-value: 2.8E-31
score: 109.2
IPR001209Ribosomal protein S14PFAMPF00253Ribosomal_S14coord: 8..56
e-value: 5.0E-16
score: 58.2
IPR03974440S ribosomal protein S29/30S ribosomal protein S14 type ZPANTHERPTHR1201040S RIBOSOMAL PROTEIN S29coord: 1..55
IPR018271Ribosomal protein S14, conserved sitePROSITEPS00527RIBOSOMAL_S14coord: 22..44

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2491contigH-paniculata_contig2491:18930..19619 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2491.6770.1mRNA_H-paniculata_contig2491.6770.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig2491 16898..20435 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig2491.6770.1 ID=prot_H-paniculata_contig2491.6770.1|Name=mRNA_H-paniculata_contig2491.6770.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=57bp
MGSKALVNSHPKKYGKGGRHCRVCSNQHGLIRKYGLNMCRQCFRIYANDI
GFTKFS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001209Ribosomal_S14
IPR03974440S_S29/30S_S14z
IPR018271Ribosomal_S14_CS