mRNA_H-paniculata_contig2489.6761.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2489.6761.1
Unique NamemRNA_H-paniculata_contig2489.6761.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig2489.6761.1 vs. uniprot
Match: D7FNT6_ECTSI (Derlin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNT6_ECTSI)

HSP 1 Score: 181 bits (460), Expect = 3.820e-54
Identity = 91/144 (63.19%), Postives = 110/144 (76.39%), Query Frame = 1
Query:   10 RYEMDAFNTGGGGGSADFAFMLIFGVATIEIIHLTLFFAPIFFVFSAVLFYVMYVWSRKNPSMSVSVWGIIINAVYIPWVFLFIHILMGGGPFLPLLGIASGHLFYFLVDVLPDLHDIDLLRTPQFLVKILGWDVPRSGVHRQA 441
            RYE D F+ GGGGGSAD+A+ML+FG   IE   L LF+ P     +A++FY+ YVWSRKNP MSVS WGIIINA+Y+PWV + + +++G   F+ LLGIA GHLFYFLVDVLPDLHDIDLL+TPQFLV +LGW    SGV  QA
Sbjct:  110 RYEKDGFSMGGGGGSADYAYMLLFGFVGIETSLLLLFYQPFMIFTTAIMFYICYVWSRKNPGMSVSFWGIIINALYVPWVMVALRVVLGHSIFMALLGIAVGHLFYFLVDVLPDLHDIDLLQTPQFLVNMLGWGHEGSGVTMQA 253          
BLAST of mRNA_H-paniculata_contig2489.6761.1 vs. uniprot
Match: A0A6H5KW67_9PHAE (Derlin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW67_9PHAE)

HSP 1 Score: 177 bits (450), Expect = 6.570e-54
Identity = 91/151 (60.26%), Postives = 109/151 (72.19%), Query Frame = 1
Query:   10 RYEMDAFNTGGGGGSADFAFMLIFGVATIEIIHLTLFFAPIFFVFSAVLFYVMYVWSRKNPSMSVSVWGIIINAVYIPWVFLFIHILMGGGPFLPLLGIASGHLFYFLVDVLPDLHDIDLLRTPQFLVKILGWDVPRSGVHRQAPNQNNAA 462
            RYE D F+ GGGGGSAD+A+ML+FG   IE   L LF+ P      A++FY+ YVWSRKNP MSVS WGI INA+Y+PWV + + + +G   F+ LLGIA GHLFYFLVDVLPDLH+IDLL+TPQFLV +LGW    SGV  QA     AA
Sbjct:   10 RYEKDGFSMGGGGGSADYAYMLLFGFVCIEASLLLLFYQPFMIFTEAIMFYICYVWSRKNPGMSVSFWGIHINALYVPWVMIAMRVAIGASIFMALLGIAVGHLFYFLVDVLPDLHEIDLLQTPQFLVNMLGWGREGSGVTMQAGGGGAAA 160          
BLAST of mRNA_H-paniculata_contig2489.6761.1 vs. uniprot
Match: A0A835YYA5_9STRA (Derlin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYA5_9STRA)

HSP 1 Score: 138 bits (347), Expect = 1.510e-37
Identity = 72/145 (49.66%), Postives = 96/145 (66.21%), Query Frame = 1
Query:    1 YRRRYEMDAFNTGGGGGSADFAFMLIFGVATIEIIHLTLFFAPIFFVFSAVLFYVMYVWSRKNPSMSVSVWGIIINAVYIPWVFLFIHILMGGGPFLPLLGIASGHLFYFLVDVLPDLHDIDLLRTPQFLVKILGWDVPRSGVHR 435
            Y  RYE DAF+TGGGGGSAD+A+ML FG+A +  + L  F  P  F+   ++F ++YVWSRK P +  S WGI + +VY+PWV +  ++L G   F PLLGI  GHL+YFLVDV+PD    D+L TP FL  + G+    +GV R
Sbjct:   91 YSIRYEKDAFDTGGGGGSADYAWMLAFGMAVLSGLSLAFFVVP--FLSIPLMFMIIYVWSRKVPDVPTSFWGITVQSVYVPWVMVAFNLLTGASAFNPLLGIGVGHLYYFLVDVVPDQFGKDVLTTPAFLTDLFGYGGLNTGVQR 233          
BLAST of mRNA_H-paniculata_contig2489.6761.1 vs. uniprot
Match: A0A7S2XX42_9STRA (Derlin n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XX42_9STRA)

HSP 1 Score: 121 bits (304), Expect = 4.330e-31
Identity = 61/138 (44.20%), Postives = 96/138 (69.57%), Query Frame = 1
Query:    1 YRRRYEMDA-FNTGGGGGSADFAFMLIFGVATIEIIHLTLFFAPIFFVFSAVLFYVMYVWSRKNPSMSVS-VWGIIINAVYIPWVFLFIHILMGGGPFLPLLGIASGHLFYFLVDVLPDLHDIDLLRTPQFLVKILGW 408
            Y  +YE    FNTGGGGG +D+AFM++FG+  + II    +F    F+   ++F+VMYVWSR+ P ++VS ++G+ I ++Y PW ++   IL+G  PF+ LLGIA GHL+YFL +++PD +D ++L+TP F++   G+
Sbjct:   88 YSEKYETGGCFNTGGGGGVSDYAFMMMFGMVVMNIIG---YFMNTPFMAQPLVFFVMYVWSRRFPDLTVSFMFGVKIQSIYAPWAYVAFQILLGNSPFMALLGIAVGHLYYFLAEIVPDQYDFEILKTPVFMIHYFGY 222          
BLAST of mRNA_H-paniculata_contig2489.6761.1 vs. uniprot
Match: A0A482RVM1_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RVM1_9ARCH)

HSP 1 Score: 116 bits (291), Expect = 2.050e-29
Identity = 62/137 (45.26%), Postives = 91/137 (66.42%), Query Frame = 1
Query:    7 RRYEMDAFNTGGGGGSADFAFMLIFGVATIEIIHLTLFFAPIF--FVFSAVLFYV-MYVWSRKNPSMSVSVWGIIINAVYIPWVFLFIHILMGGGPFLPLLGIASGHLFYFLVDVLPDLHDIDLLRTPQFLVKILGW 408
            +RYE + FNTG GG SADF ++L+  +  + ++      A IF  +V S  L YV MYVWSR+ P   +++WG    A+Y+PWV++ I ++MGG    PL+G+A GHL+YFLV VLP  H +DL++TP+F V I+ +
Sbjct:   85 KRYESNPFNTGAGGNSADFLWLLLIAMTVLLVL------AYIFDMYVLSEPLLYVIMYVWSRREPDAMLNIWGFRFKALYLPWVYIAIRMVMGGAITEPLIGVAVGHLYYFLVQVLPATHGVDLIKTPKFCVDIVKY 215          
BLAST of mRNA_H-paniculata_contig2489.6761.1 vs. uniprot
Match: K3W7V3_GLOUD (Derlin n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W7V3_GLOUD)

HSP 1 Score: 112 bits (280), Expect = 1.200e-27
Identity = 57/133 (42.86%), Postives = 86/133 (64.66%), Query Frame = 1
Query:    1 YRRRYEMDAFNTGGGGGSADFAFMLIFGVATIEIIHLTLFFAPIFFVFSAVLFYVMYVWSRKNPSMSVSVWGIIINAVYIPWVFLFIHILMGGGPFLPLLGIASGHLFYFLVDVLPDLHDIDLLRTPQFLVKI 399
            Y  R E D F  GGGG +AD+AFML FG   + +I    FF  + F+ SA++F ++YVWSR+NP++ V++WG     +Y+PW  +   +LMGG P + + G+ +GHL+YFL++VLP     +LL+TP F   +
Sbjct:   80 YSSRLEEDPF-PGGGGPTADYAFMLFFGACVLWVIA---FFMELPFLGSALIFMIVYVWSRRNPTVPVAIWGFQFQGLYLPWALIAFTVLMGGSPMMDIFGVIAGHLYYFLLEVLPTTKGWNLLQTPSFFATL 208          
BLAST of mRNA_H-paniculata_contig2489.6761.1 vs. uniprot
Match: A0A7S1ZMQ5_TRICV (Derlin (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZMQ5_TRICV)

HSP 1 Score: 110 bits (275), Expect = 5.330e-27
Identity = 61/138 (44.20%), Postives = 94/138 (68.12%), Query Frame = 1
Query:    1 YRRRYEMDA-FNTGGGGGSADFAFMLIFGVAT-IEIIHLTLFFAPIFFVFSA-VLFYVMYVWSRKNPSMSVSVWGIIINAVYIPWVFLFIHILMGGGPFLPLLGIASGHLFYFLVDVLPDLHDIDLLRTPQFLVKILG 405
            + R+YE    +NTG GGG+AD+AF L+F V T I   HL     P+  +F   ++F+V+Y+WS+KNP+ + S+WG+ +  +Y+P+ +L +++LMG   F  L GIA GH++YFLVDV+P ++  D+L TPQFL+   G
Sbjct:   89 FSRQYESGGPYNTGAGGGTADYAFALLFAVVTMIASFHLLRGMMPLAPLFVRNLVFFVLYLWSKKNPTSNSSIWGVPVKGMYLPFAYLALNVLMGNPFFDVLHGIAMGHIYYFLVDVVPIVYGKDVLHTPQFLIDHFG 226          
BLAST of mRNA_H-paniculata_contig2489.6761.1 vs. uniprot
Match: A0A5D6YDW5_9STRA (Derlin n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YDW5_9STRA)

HSP 1 Score: 110 bits (275), Expect = 5.580e-27
Identity = 56/133 (42.11%), Postives = 85/133 (63.91%), Query Frame = 1
Query:    1 YRRRYEMDAFNTGGGGGSADFAFMLIFGVATIEIIHLTLFFAPIFFVFSAVLFYVMYVWSRKNPSMSVSVWGIIINAVYIPWVFLFIHILMGGGPFLPLLGIASGHLFYFLVDVLPDLHDIDLLRTPQFLVKI 399
            Y  R E D F +GGG  +ADFAFML FG   + +I    FF  + F+ S+++F ++YVWSR+NP+M V++WG     +Y+PW  +   +LMGG P + + G+ +GHL+YFL++VLP      L++TP F   +
Sbjct:   80 YASRLEEDPFPSGGG-PTADFAFMLFFGAVVLWVIA---FFMALPFLGSSLIFMIVYVWSRRNPTMPVAIWGFQFEGLYLPWALIAFTVLMGGNPMMDIFGVIAGHLYYFLLEVLPTTKGWTLIQTPSFFANM 208          
BLAST of mRNA_H-paniculata_contig2489.6761.1 vs. uniprot
Match: B8C650_THAPS (Derlin (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C650_THAPS)

HSP 1 Score: 107 bits (267), Expect = 3.160e-26
Identity = 58/135 (42.96%), Postives = 95/135 (70.37%), Query Frame = 1
Query:    1 YRRRYEMDAFNTGGGGGSADFAFMLIFGVATIEIIH----LTLFFAPIFFVFSAVLFYVMYVWSRKNPSMSVSVWGIIINAVYIPWVFLFIHILMGGGPFLPLL-GIASGHLFYFLVDVLPDLHDIDLLRTPQFL 390
            + +RYE + +NTG GGG+AD+ F ++FG+A+I + +    + L  AP+F     + F+V+Y WS+++P+   S+WG+ + A+++P+ ++ + +LMG  P+  LL GIA GHLFYFLVDV+P ++  D+L TPQFL
Sbjct:   73 FSQRYESEPYNTGAGGGTADYIFAMMFGMASIFLTYPLMGMVLPVAPLFA--RTLTFFVIYTWSKRHPTAPTSIWGVQLKAIHLPFAYVVLSVLMGN-PYGDLLHGIAVGHLFYFLVDVVPIVYGKDVLHTPQFL 204          
BLAST of mRNA_H-paniculata_contig2489.6761.1 vs. uniprot
Match: A0A8K1CCR7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CCR7_PYTOL)

HSP 1 Score: 107 bits (266), Expect = 1.040e-25
Identity = 54/133 (40.60%), Postives = 85/133 (63.91%), Query Frame = 1
Query:    1 YRRRYEMDAFNTGGGGGSADFAFMLIFGVATIEIIHLTLFFAPIFFVFSAVLFYVMYVWSRKNPSMSVSVWGIIINAVYIPWVFLFIHILMGGGPFLPLLGIASGHLFYFLVDVLPDLHDIDLLRTPQFLVKI 399
            Y  R E D F +GGG  +AD+AFM+ FG   + II    FF  + F+  +++F ++YVWSR+NP+  V++WG     +Y+PW  +   +LMGG P + + G+ +GH++YFL++VLP+    +LL+TP F   I
Sbjct:   80 YSSRLEEDPFPSGGG-PTADYAFMIFFGACILWIIA---FFMELPFLGPSLIFMIVYVWSRRNPTAPVAIWGFQFQGLYLPWALIAFTVLMGGNPMMDIFGVIAGHMYYFLLEVLPNTKGWNLLQTPSFFANI 208          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2489.6761.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNT6_ECTSI3.820e-5463.19Derlin n=1 Tax=Ectocarpus siliculosus TaxID=2880 R... [more]
A0A6H5KW67_9PHAE6.570e-5460.26Derlin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=8... [more]
A0A835YYA5_9STRA1.510e-3749.66Derlin n=1 Tax=Tribonema minus TaxID=303371 RepID=... [more]
A0A7S2XX42_9STRA4.330e-3144.20Derlin n=1 Tax=Fibrocapsa japonica TaxID=94617 Rep... [more]
A0A482RVM1_9ARCH2.050e-2945.26Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]
K3W7V3_GLOUD1.200e-2742.86Derlin n=1 Tax=Globisporangium ultimum (strain ATC... [more]
A0A7S1ZMQ5_TRICV5.330e-2744.20Derlin (Fragment) n=1 Tax=Trieres chinensis TaxID=... [more]
A0A5D6YDW5_9STRA5.580e-2742.11Derlin n=1 Tax=Pythium brassicum TaxID=1485010 Rep... [more]
B8C650_THAPS3.160e-2642.96Derlin (Fragment) n=1 Tax=Thalassiosira pseudonana... [more]
A0A8K1CCR7_PYTOL1.040e-2540.60Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2489contigH-paniculata_contig2489:20125..20586 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score176.8
Seed ortholog evalue7.5e-42
Seed eggNOG ortholog2880.D7FNT6
Preferred nameDER1
KEGG koko:K13989
KEGG Pathwayko04141,map04141
KEGG ModuleM00403
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.ubiquitin-dependent ERAD pathway
EggNOG OGsCOG5291@1,KOG0858@2759
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Exons1
Model size462
Cds size444
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929727.6533868-CDS-H-paniculata_contig2489:20124..205681622929727.6533868-CDS-H-paniculata_contig2489:20124..20568Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2489 20125..20568 -
1691480984.990334-CDS-H-paniculata_contig2489:20124..205681691480984.990334-CDS-H-paniculata_contig2489:20124..20568Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2489 20125..20568 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929727.66918-UTR-H-paniculata_contig2489:20568..205861622929727.66918-UTR-H-paniculata_contig2489:20568..20586Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2489 20569..20586 -
1691480985.0032742-UTR-H-paniculata_contig2489:20568..205861691480985.0032742-UTR-H-paniculata_contig2489:20568..20586Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2489 20569..20586 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2489.6761.1prot_H-paniculata_contig2489.6761.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2489 20125..20568 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2489.6761.1

>prot_H-paniculata_contig2489.6761.1 ID=prot_H-paniculata_contig2489.6761.1|Name=mRNA_H-paniculata_contig2489.6761.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=148bp
MDAFNTGGGGGSADFAFMLIFGVATIEIIHLTLFFAPIFFVFSAVLFYVM
YVWSRKNPSMSVSVWGIIINAVYIPWVFLFIHILMGGGPFLPLLGIASGH
LFYFLVDVLPDLHDIDLLRTPQFLVKILGWDVPRSGVHRQAPNQNNAA
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mRNA from alignment at H-paniculata_contig2489:20125..20586-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2489.6761.1 ID=mRNA_H-paniculata_contig2489.6761.1|Name=mRNA_H-paniculata_contig2489.6761.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=462bp|location=Sequence derived from alignment at H-paniculata_contig2489:20125..20586- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATCGCCGCAGGTACGAGATGGATGCATTCAACACGGGAGGTGGAGGCGG CAGCGCGGACTTCGCCTTCATGCTGATCTTCGGCGTGGCGACGATCGAAA TCATTCACCTCACGCTCTTCTTCGCTCCGATCTTCTTCGTATTCTCTGCC GTGTTATTCTATGTTATGTACGTCTGGTCGAGGAAAAACCCATCGATGAG TGTTAGTGTATGGGGCATCATCATCAACGCGGTGTACATCCCGTGGGTAT TCCTGTTTATACACATTTTGATGGGTGGAGGCCCGTTCCTGCCTCTGTTA GGAATCGCATCAGGCCACCTCTTCTATTTTCTCGTGGATGTGTTGCCCGA TCTGCATGACATCGACCTGCTCAGGACGCCGCAGTTTCTCGTCAAGATTC TGGGATGGGATGTTCCGCGGTCTGGCGTGCACAGGCAGGCACCCAACCAA AACAACGCGGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig2489:20125..20586-

>mRNA_H-paniculata_contig2489.6761.1 ID=mRNA_H-paniculata_contig2489.6761.1|Name=mRNA_H-paniculata_contig2489.6761.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=888bp|location=Sequence derived from alignment at H-paniculata_contig2489:20125..20586- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATGCATTCAACACGGGAGGTGGAGGCGGCAGCGCGGACTTCGCCTT
CATGCTGATCTTCGGCGTGGCGACGATCGAAATCATTCACCTCACGCTCT
TCTTCGCTCCGATCTTCTTCGTATTCTCTGCCGTGTTATTCTATGTTATG
TACGTCTGGTCGAGGAAAAACCCATCGATGAGTGTTAGTGTATGGGGCAT
CATCATCAACGCGGTGTACATCCCGTGGGTATTCCTGTTTATACACATTT
TGATGGGTGGAGGCCCGTTCCTGCCTCTGTTAGGAATCGCATCAGGCCAC
CTCTTCTATTTTCTCGTGGATGTGTTGCCCGATCTGCATGACATCGACCT
GCTCAGGACGCCGCAGTTTCTCGTCAAGATTCTGGGATGGGATGTTCCGC
GGTCTGGCGTGCACAGGCAGGCACCCAACCAAAACAACGCGGCGATGGAT
GCATTCAACACGGGAGGTGGAGGCGGCAGCGCGGACTTCGCCTTCATGCT
GATCTTCGGCGTGGCGACGATCGAAATCATTCACCTCACGCTCTTCTTCG
CTCCGATCTTCTTCGTATTCTCTGCCGTGTTATTCTATGTTATGTACGTC
TGGTCGAGGAAAAACCCATCGATGAGTGTTAGTGTATGGGGCATCATCAT
CAACGCGGTGTACATCCCGTGGGTATTCCTGTTTATACACATTTTGATGG
GTGGAGGCCCGTTCCTGCCTCTGTTAGGAATCGCATCAGGCCACCTCTTC
TATTTTCTCGTGGATGTGTTGCCCGATCTGCATGACATCGACCTGCTCAG
GACGCCGCAGTTTCTCGTCAAGATTCTGGGATGGGATGTTCCGCGGTCTG
GCGTGCACAGGCAGGCACCCAACCAAAACAACGCGGCG
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