mRNA_H-paniculata_contig24830.6743.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24830.6743.1
Unique NamemRNA_H-paniculata_contig24830.6743.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig24830.6743.1 vs. uniprot
Match: A0A6H5JKT7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKT7_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 6.040e-23
Identity = 44/126 (34.92%), Postives = 77/126 (61.11%), Query Frame = 1
Query:    1 VTDTEEPPVRFSDIKKLTHKKLWNEAVRVEFEGLENLNAWTYVDSVRKGSNVVSARWLFAWKIDAQGNVTKPEARLIARGFIQQHIVDFLEVFAPTVAASSVKMVIAVAVENDWGMWQLDVKQAFI 378
            + D E     + + ++  +  +W +A+  EFEGL     +   +    G NV++ARW++ WK D  G + K EARL+A GF Q+H+VD+L  F+PT  ASS+++++A+A + D   +  +++QAF+
Sbjct:  122 IQDVESESGSYQEARQSKYSTIWGKAMSAEFEGLLRAGTFALAEKAPLGCNVINARWVYKWKADETGKIVKAEARLVAEGFKQKHVVDYLGTFSPTANASSIRLLVALACKYDLEFFHFEIEQAFV 247          
BLAST of mRNA_H-paniculata_contig24830.6743.1 vs. uniprot
Match: A0A5B7B5N1_DAVIN (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7B5N1_DAVIN)

HSP 1 Score: 90.1 bits (222), Expect = 1.800e-20
Identity = 45/121 (37.19%), Postives = 73/121 (60.33%), Query Frame = 1
Query:   31 FSDIKKLTHKKL-----WNEAVRVEFEGLENLNAWTYVDSVRKGSNVVSARWLFAWKIDAQGNVTKPEARLIARGFIQQHIVDFLEVFAPTVAASSVKMVIAVAVENDWGMWQLDVKQAFI 378
            FSD   +T K+      W +A+  E E +E  N W   + + KG N +  +W++  K+   G V K +ARL+A+G+ Q+  VD+ EVFAP     ++++VIA+A +N W ++Q+DVK AF+
Sbjct:   28 FSDCDPVTFKEAVKESKWRKAMDTEIEAIERNNTWELTE-LPKGQNTIGVKWVYKTKLKKTGEVDKYKARLVAKGYKQEFGVDYKEVFAPVARHDTIRLVIALAAQNSWLIFQMDVKSAFL 147          
BLAST of mRNA_H-paniculata_contig24830.6743.1 vs. uniprot
Match: A0A6L2KMI8_TANCI (Ribonuclease H-like domain, reverse transcriptase, RNA-dependent DNA polymerase n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2KMI8_TANCI)

HSP 1 Score: 92.8 bits (229), Expect = 5.290e-20
Identity = 42/112 (37.50%), Postives = 72/112 (64.29%), Query Frame = 1
Query:   43 KKLTHKKLWNEAVRVEFEGLENLNAWTYVDSVRKGSNVVSARWLFAWKIDAQGNVTKPEARLIARGFIQQHIVDFLEVFAPTVAASSVKMVIAVAVENDWGMWQLDVKQAFI 378
            K+ +  + W EA++VE + +   N W  + ++ KG   +  +W+F  K DA GN+ K +ARL+A+G+IQ+H +DF EVFAP     ++++++A+A  N W +  L+VK AF+
Sbjct:  207 KEASSDQKWIEAMKVELDSINRNNTWE-LTTLPKGHKAIGLKWVFKTKKDANGNIIKHKARLLAKGYIQEHGIDFEEVFAPVARMETIRLLLAIAANNKWEVRHLNVKSAFL 317          
BLAST of mRNA_H-paniculata_contig24830.6743.1 vs. uniprot
Match: A0A392M0Q4_9FABA (Copia-type polyprotein n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392M0Q4_9FABA)

HSP 1 Score: 94.0 bits (232), Expect = 7.480e-20
Identity = 46/119 (38.66%), Postives = 73/119 (61.34%), Query Frame = 1
Query:   22 PVRFSDIKKLTHKKLWNEAVRVEFEGLENLNAWTYVDSVRKGSNVVSARWLFAWKIDAQGNVTKPEARLIARGFIQQHIVDFLEVFAPTVAASSVKMVIAVAVENDWGMWQLDVKQAFI 378
            PV F D  K     +W +A+  E + +E    W  VD   K + +   +W+F  K++  G ++K +ARL+ARGF+Q+H +D+ EVFAP     +V++V+A+A +N W M+ LDVK AF+
Sbjct:  220 PVNFKDALK---SNVWRKAMEEELKSIEKNQTWKLVDLPDKKAKI-DVKWVFKVKLNPDGTISKHKARLVARGFLQKHGIDYNEVFAPVARIETVRLVVALACKNRWKMYHLDVKSAFL 334          
BLAST of mRNA_H-paniculata_contig24830.6743.1 vs. uniprot
Match: A0A699HGA1_TANCI (Ribonuclease H-like domain, reverse transcriptase, RNA-dependent DNA polymerase n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699HGA1_TANCI)

HSP 1 Score: 93.6 bits (231), Expect = 1.010e-19
Identity = 45/112 (40.18%), Postives = 70/112 (62.50%), Query Frame = 1
Query:   43 KKLTHKKLWNEAVRVEFEGLENLNAWTYVDSVRKGSNVVSARWLFAWKIDAQGNVTKPEARLIARGFIQQHIVDFLEVFAPTVAASSVKMVIAVAVENDWGMWQLDVKQAFI 378
            K+ +  K W EA++VE + +   N W  + ++ KG   +  +W+F  K DA GN  K +A L+A G+IQQH +DF EVFAP     +V++++A+A  N W ++ LDVK AF+
Sbjct:  508 KEASSDKKWIEAMKVELDSINRSNTWE-LTTLPKGHKAIGLKWVFKTKKDANGNKIKHKAILVANGYIQQHGIDFEEVFAPVARMETVRLLLAIAANNKWEVYHLDVKFAFL 618          
BLAST of mRNA_H-paniculata_contig24830.6743.1 vs. uniprot
Match: UPI00115FD4EF (hypothetical protein n=1 Tax=Acinetobacter baumannii TaxID=470 RepID=UPI00115FD4EF)

HSP 1 Score: 87.8 bits (216), Expect = 3.390e-19
Identity = 44/119 (36.97%), Postives = 75/119 (63.03%), Query Frame = 1
Query:   22 PVRFSDIKKLTHKKLWNEAVRVEFEGLENLNAWTYVDSVRKGSNVVSARWLFAWKIDAQGNVTKPEARLIARGFIQQHIVDFLEVFAPTVAASSVKMVIAVAVENDWGMWQLDVKQAFI 378
            P  + + K+  HK+ W +AV+ E + +E  + W   D + KG   V++RW+F  K  + G + + +ARL+ARGF Q +  D+L+ FAP     +V++V+++AV  +W +WQ+DVK AF+
Sbjct:   63 PQSYEEAKE--HKE-WRDAVQEETKAMELNHTWDEAD-LPKGKKAVTSRWIFTIKYKSDGGIERYKARLVARGFTQTYGEDYLDTFAPVAKLHTVRVVLSLAVNLEWELWQMDVKNAFL 177          
BLAST of mRNA_H-paniculata_contig24830.6743.1 vs. uniprot
Match: A0A2K3NXK0_TRIPR (Putative copia-type polyprotein n=2 Tax=Trifolium TaxID=3898 RepID=A0A2K3NXK0_TRIPR)

HSP 1 Score: 92.0 bits (227), Expect = 3.700e-19
Identity = 44/119 (36.97%), Postives = 75/119 (63.03%), Query Frame = 1
Query:   22 PVRFSDIKKLTHKKLWNEAVRVEFEGLENLNAWTYVDSVRKGSNVVSARWLFAWKIDAQGNVTKPEARLIARGFIQQHIVDFLEVFAPTVAASSVKMVIAVAVENDWGMWQLDVKQAFI 378
            P+ F +  K +    W +A+  E E +E  N W  V+ + KG   V  +W++  K++ +G + K +ARL+A+G+ Q++ +D+ EVFAP     +++MVIA+A  N+W ++QLDVK AF+
Sbjct:  810 PIAFDEAIKSSR---WRKAMDAEIEAIEKNNTWELVE-LPKGEKAVGVKWIYKTKVNEKGEIDKFKARLVAKGYTQKYGIDYSEVFAPVARHDTIRMVIALAALNNWTVFQLDVKSAFL 924          
BLAST of mRNA_H-paniculata_contig24830.6743.1 vs. uniprot
Match: UPI001A47D353 (uncharacterized protein n=1 Tax=Ustilago hordei TaxID=120017 RepID=UPI001A47D353)

HSP 1 Score: 86.7 bits (213), Expect = 3.750e-19
Identity = 46/107 (42.99%), Postives = 66/107 (61.68%), Query Frame = 1
Query:   58 KKLWNEAVRVEFEGLENLNAWTYVDSVRKGSNVVSARWLFAWKIDAQGNVTKPEARLIARGFIQQHIVDFLEVFAPTVAASSVKMVIAVAVENDWGMWQLDVKQAFI 378
            K+LW EA++ E EGLE +  W  +D +    N V  +W+   K DA    TK +ARLIARGF Q+  VD+ E+FAP     S++ V+AVA   DW +  ++VKQA++
Sbjct:    6 KRLWEEAMQKELEGLEAMGTWEVMD-LPVSMNTVDTKWVLKVKTDANLVPTKFKARLIARGFTQRKGVDYTEIFAPVAPIQSIRGVLAVAAVQDWEVDSINVKQAYL 111          
BLAST of mRNA_H-paniculata_contig24830.6743.1 vs. uniprot
Match: A0A2U1PR14_ARTAN (Ribonuclease H-like domain, Reverse transcriptase, RNA-dependent DNA polymerase n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1PR14_ARTAN)

HSP 1 Score: 91.7 bits (226), Expect = 4.990e-19
Identity = 40/112 (35.71%), Postives = 71/112 (63.39%), Query Frame = 1
Query:   43 KKLTHKKLWNEAVRVEFEGLENLNAWTYVDSVRKGSNVVSARWLFAWKIDAQGNVTKPEARLIARGFIQQHIVDFLEVFAPTVAASSVKMVIAVAVENDWGMWQLDVKQAFI 378
            ++ ++ + W EA++VE + +   N W  + ++ KG   +  +W+F  K DA GN+ K +AR++A+G+IQ H +DF EVFAP     ++++++ +A  N W +  LDVK AF+
Sbjct:  654 REASNNQKWIEAMKVELDFINRNNTWE-LTTLPKGHKAIGLKWVFKTKKDANGNIVKHKARIVAKGYIQDHGIDFEEVFAPVARMETIRLLLTIAANNKWEVHHLDVKSAFL 764          
BLAST of mRNA_H-paniculata_contig24830.6743.1 vs. uniprot
Match: A0A445FKH7_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Glycine soja TaxID=3848 RepID=A0A445FKH7_GLYSO)

HSP 1 Score: 91.7 bits (226), Expect = 5.060e-19
Identity = 44/123 (35.77%), Postives = 76/123 (61.79%), Query Frame = 1
Query:   10 TEEPPVRFSDIKKLTHKKLWNEAVRVEFEGLENLNAWTYVDSVRKGSNVVSARWLFAWKIDAQGNVTKPEARLIARGFIQQHIVDFLEVFAPTVAASSVKMVIAVAVENDWGMWQLDVKQAFI 378
            TE+ P+ F    K    K W +A+  E E +E    W  +  + KG   +  +W+F  K++ +G V K +ARL+A+G+ QQ+ V++ EVFAP     ++++++A+A +N+W ++QLDVK AF+
Sbjct:  741 TEDDPLTFEQAVK---SKKWRDAMMAEIESIEKNKTWE-LTILPKGVKPIGVKWVFKTKLNEKGEVDKYKARLVAKGYAQQYGVNYTEVFAPVARLDTIRLILALAAQNNWDVFQLDVKSAFL 859          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24830.6743.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JKT7_9PHAE6.040e-2334.92Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5B7B5N1_DAVIN1.800e-2037.19Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6L2KMI8_TANCI5.290e-2037.50Ribonuclease H-like domain, reverse transcriptase,... [more]
A0A392M0Q4_9FABA7.480e-2038.66Copia-type polyprotein n=1 Tax=Trifolium medium Ta... [more]
A0A699HGA1_TANCI1.010e-1940.18Ribonuclease H-like domain, reverse transcriptase,... [more]
UPI00115FD4EF3.390e-1936.97hypothetical protein n=1 Tax=Acinetobacter baumann... [more]
A0A2K3NXK0_TRIPR3.700e-1936.97Putative copia-type polyprotein n=2 Tax=Trifolium ... [more]
UPI001A47D3533.750e-1942.99uncharacterized protein n=1 Tax=Ustilago hordei Ta... [more]
A0A2U1PR14_ARTAN4.990e-1935.71Ribonuclease H-like domain, Reverse transcriptase,... [more]
A0A445FKH7_GLYSO5.060e-1935.77Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24830contigH-paniculata_contig24830:3354..3731 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score92.8
Seed ortholog evalue1.2e-16
Seed eggNOG ortholog15368.BRADI0007S00200.2
KEGG koko:K20093
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37THH@33090,3GG2K@35493,3INI6@38820,3M96M@4447,COG2801@1,KOG0017@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Exons1
Model size378
Cds size378
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929725.8118534-CDS-H-paniculata_contig24830:3353..37311622929725.8118534-CDS-H-paniculata_contig24830:3353..3731Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24830 3354..3731 +
1691480984.214539-CDS-H-paniculata_contig24830:3353..37311691480984.214539-CDS-H-paniculata_contig24830:3353..3731Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24830 3354..3731 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24830.6743.1prot_H-paniculata_contig24830.6743.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24830 3354..3731 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24830.6743.1

>prot_H-paniculata_contig24830.6743.1 ID=prot_H-paniculata_contig24830.6743.1|Name=mRNA_H-paniculata_contig24830.6743.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=126bp
VTDTEEPPVRFSDIKKLTHKKLWNEAVRVEFEGLENLNAWTYVDSVRKGS
NVVSARWLFAWKIDAQGNVTKPEARLIARGFIQQHIVDFLEVFAPTVAAS
SVKMVIAVAVENDWGMWQLDVKQAFI
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mRNA from alignment at H-paniculata_contig24830:3354..3731+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24830.6743.1 ID=mRNA_H-paniculata_contig24830.6743.1|Name=mRNA_H-paniculata_contig24830.6743.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=378bp|location=Sequence derived from alignment at H-paniculata_contig24830:3354..3731+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTACTGACACAGAGGAGCCCCCTGTTCGCTTTTCAGACATCAAGAAGCT GACACATAAAAAGTTGTGGAATGAGGCAGTCAGAGTAGAGTTTGAGGGCT TGGAGAATCTCAACGCTTGGACTTATGTAGATAGTGTGCGGAAAGGTTCC AATGTTGTCAGTGCGAGATGGTTATTTGCATGGAAAATTGATGCGCAGGG GAACGTTACAAAGCCAGAGGCAAGGCTTATAGCTCGAGGGTTTATCCAGC AACACATCGTTGATTTTCTCGAAGTGTTTGCTCCTACGGTAGCCGCTTCC AGTGTGAAGATGGTAATTGCTGTTGCTGTCGAAAACGACTGGGGAATGTG GCAACTTGATGTAAAACAGGCTTTTATT
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Coding sequence (CDS) from alignment at H-paniculata_contig24830:3354..3731+

>mRNA_H-paniculata_contig24830.6743.1 ID=mRNA_H-paniculata_contig24830.6743.1|Name=mRNA_H-paniculata_contig24830.6743.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at H-paniculata_contig24830:3354..3731+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTACTGACACAGAGGAGCCCCCTGTTCGCTTTTCAGACATCAAGAAGCT
GACACATAAAAAGTTGTGGAATGAGGCAGTCAGAGTAGAGTTTGAGGGCT
TGGAGAATCTCAACGCTTGGACTTATGTAGATAGTGTGCGGAAAGGTTCC
AATGTTGTCAGTGCGAGATGGTTATTTGCATGGAAAATTGATGCGCAGGG
GAACGTTACAAAGCCAGAGGCAAGGCTTATAGCTCGAGGGTTTATCCAGC
AACACATCGTTGATTTTCTCGAAGTGTTTGCTCCTACGGTAGCCGCTTCC
AGTGTGAAGATGGTAATTGCTGTTGCTGTCGAAAACGACTGGGGAATGTG
GCAACTTGATGTAAAACAGGCTTTTATTGTTACTGACACAGAGGAGCCCC
CTGTTCGCTTTTCAGACATCAAGAAGCTGACACATAAAAAGTTGTGGAAT
GAGGCAGTCAGAGTAGAGTTTGAGGGCTTGGAGAATCTCAACGCTTGGAC
TTATGTAGATAGTGTGCGGAAAGGTTCCAATGTTGTCAGTGCGAGATGGT
TATTTGCATGGAAAATTGATGCGCAGGGGAACGTTACAAAGCCAGAGGCA
AGGCTTATAGCTCGAGGGTTTATCCAGCAACACATCGTTGATTTTCTCGA
AGTGTTTGCTCCTACGGTAGCCGCTTCCAGTGTGAAGATGGTAATTGCTG
TTGCTGTCGAAAACGACTGGGGAATGTGGCAACTTGATGTAAAACAGGCT
TTTATT
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