mRNA_H-paniculata_contig24830.6743.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig24830.6743.1 vs. uniprot
Match: A0A6H5JKT7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKT7_9PHAE) HSP 1 Score: 102 bits (254), Expect = 6.040e-23 Identity = 44/126 (34.92%), Postives = 77/126 (61.11%), Query Frame = 1
Query: 1 VTDTEEPPVRFSDIKKLTHKKLWNEAVRVEFEGLENLNAWTYVDSVRKGSNVVSARWLFAWKIDAQGNVTKPEARLIARGFIQQHIVDFLEVFAPTVAASSVKMVIAVAVENDWGMWQLDVKQAFI 378
+ D E + + ++ + +W +A+ EFEGL + + G NV++ARW++ WK D G + K EARL+A GF Q+H+VD+L F+PT ASS+++++A+A + D + +++QAF+
Sbjct: 122 IQDVESESGSYQEARQSKYSTIWGKAMSAEFEGLLRAGTFALAEKAPLGCNVINARWVYKWKADETGKIVKAEARLVAEGFKQKHVVDYLGTFSPTANASSIRLLVALACKYDLEFFHFEIEQAFV 247
BLAST of mRNA_H-paniculata_contig24830.6743.1 vs. uniprot
Match: A0A5B7B5N1_DAVIN (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7B5N1_DAVIN) HSP 1 Score: 90.1 bits (222), Expect = 1.800e-20 Identity = 45/121 (37.19%), Postives = 73/121 (60.33%), Query Frame = 1
Query: 31 FSDIKKLTHKKL-----WNEAVRVEFEGLENLNAWTYVDSVRKGSNVVSARWLFAWKIDAQGNVTKPEARLIARGFIQQHIVDFLEVFAPTVAASSVKMVIAVAVENDWGMWQLDVKQAFI 378
FSD +T K+ W +A+ E E +E N W + + KG N + +W++ K+ G V K +ARL+A+G+ Q+ VD+ EVFAP ++++VIA+A +N W ++Q+DVK AF+
Sbjct: 28 FSDCDPVTFKEAVKESKWRKAMDTEIEAIERNNTWELTE-LPKGQNTIGVKWVYKTKLKKTGEVDKYKARLVAKGYKQEFGVDYKEVFAPVARHDTIRLVIALAAQNSWLIFQMDVKSAFL 147
BLAST of mRNA_H-paniculata_contig24830.6743.1 vs. uniprot
Match: A0A6L2KMI8_TANCI (Ribonuclease H-like domain, reverse transcriptase, RNA-dependent DNA polymerase n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2KMI8_TANCI) HSP 1 Score: 92.8 bits (229), Expect = 5.290e-20 Identity = 42/112 (37.50%), Postives = 72/112 (64.29%), Query Frame = 1
Query: 43 KKLTHKKLWNEAVRVEFEGLENLNAWTYVDSVRKGSNVVSARWLFAWKIDAQGNVTKPEARLIARGFIQQHIVDFLEVFAPTVAASSVKMVIAVAVENDWGMWQLDVKQAFI 378
K+ + + W EA++VE + + N W + ++ KG + +W+F K DA GN+ K +ARL+A+G+IQ+H +DF EVFAP ++++++A+A N W + L+VK AF+
Sbjct: 207 KEASSDQKWIEAMKVELDSINRNNTWE-LTTLPKGHKAIGLKWVFKTKKDANGNIIKHKARLLAKGYIQEHGIDFEEVFAPVARMETIRLLLAIAANNKWEVRHLNVKSAFL 317
BLAST of mRNA_H-paniculata_contig24830.6743.1 vs. uniprot
Match: A0A392M0Q4_9FABA (Copia-type polyprotein n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392M0Q4_9FABA) HSP 1 Score: 94.0 bits (232), Expect = 7.480e-20 Identity = 46/119 (38.66%), Postives = 73/119 (61.34%), Query Frame = 1
Query: 22 PVRFSDIKKLTHKKLWNEAVRVEFEGLENLNAWTYVDSVRKGSNVVSARWLFAWKIDAQGNVTKPEARLIARGFIQQHIVDFLEVFAPTVAASSVKMVIAVAVENDWGMWQLDVKQAFI 378
PV F D K +W +A+ E + +E W VD K + + +W+F K++ G ++K +ARL+ARGF+Q+H +D+ EVFAP +V++V+A+A +N W M+ LDVK AF+
Sbjct: 220 PVNFKDALK---SNVWRKAMEEELKSIEKNQTWKLVDLPDKKAKI-DVKWVFKVKLNPDGTISKHKARLVARGFLQKHGIDYNEVFAPVARIETVRLVVALACKNRWKMYHLDVKSAFL 334
BLAST of mRNA_H-paniculata_contig24830.6743.1 vs. uniprot
Match: A0A699HGA1_TANCI (Ribonuclease H-like domain, reverse transcriptase, RNA-dependent DNA polymerase n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699HGA1_TANCI) HSP 1 Score: 93.6 bits (231), Expect = 1.010e-19 Identity = 45/112 (40.18%), Postives = 70/112 (62.50%), Query Frame = 1
Query: 43 KKLTHKKLWNEAVRVEFEGLENLNAWTYVDSVRKGSNVVSARWLFAWKIDAQGNVTKPEARLIARGFIQQHIVDFLEVFAPTVAASSVKMVIAVAVENDWGMWQLDVKQAFI 378
K+ + K W EA++VE + + N W + ++ KG + +W+F K DA GN K +A L+A G+IQQH +DF EVFAP +V++++A+A N W ++ LDVK AF+
Sbjct: 508 KEASSDKKWIEAMKVELDSINRSNTWE-LTTLPKGHKAIGLKWVFKTKKDANGNKIKHKAILVANGYIQQHGIDFEEVFAPVARMETVRLLLAIAANNKWEVYHLDVKFAFL 618
BLAST of mRNA_H-paniculata_contig24830.6743.1 vs. uniprot
Match: UPI00115FD4EF (hypothetical protein n=1 Tax=Acinetobacter baumannii TaxID=470 RepID=UPI00115FD4EF) HSP 1 Score: 87.8 bits (216), Expect = 3.390e-19 Identity = 44/119 (36.97%), Postives = 75/119 (63.03%), Query Frame = 1
Query: 22 PVRFSDIKKLTHKKLWNEAVRVEFEGLENLNAWTYVDSVRKGSNVVSARWLFAWKIDAQGNVTKPEARLIARGFIQQHIVDFLEVFAPTVAASSVKMVIAVAVENDWGMWQLDVKQAFI 378
P + + K+ HK+ W +AV+ E + +E + W D + KG V++RW+F K + G + + +ARL+ARGF Q + D+L+ FAP +V++V+++AV +W +WQ+DVK AF+
Sbjct: 63 PQSYEEAKE--HKE-WRDAVQEETKAMELNHTWDEAD-LPKGKKAVTSRWIFTIKYKSDGGIERYKARLVARGFTQTYGEDYLDTFAPVAKLHTVRVVLSLAVNLEWELWQMDVKNAFL 177
BLAST of mRNA_H-paniculata_contig24830.6743.1 vs. uniprot
Match: A0A2K3NXK0_TRIPR (Putative copia-type polyprotein n=2 Tax=Trifolium TaxID=3898 RepID=A0A2K3NXK0_TRIPR) HSP 1 Score: 92.0 bits (227), Expect = 3.700e-19 Identity = 44/119 (36.97%), Postives = 75/119 (63.03%), Query Frame = 1
Query: 22 PVRFSDIKKLTHKKLWNEAVRVEFEGLENLNAWTYVDSVRKGSNVVSARWLFAWKIDAQGNVTKPEARLIARGFIQQHIVDFLEVFAPTVAASSVKMVIAVAVENDWGMWQLDVKQAFI 378
P+ F + K + W +A+ E E +E N W V+ + KG V +W++ K++ +G + K +ARL+A+G+ Q++ +D+ EVFAP +++MVIA+A N+W ++QLDVK AF+
Sbjct: 810 PIAFDEAIKSSR---WRKAMDAEIEAIEKNNTWELVE-LPKGEKAVGVKWIYKTKVNEKGEIDKFKARLVAKGYTQKYGIDYSEVFAPVARHDTIRMVIALAALNNWTVFQLDVKSAFL 924
BLAST of mRNA_H-paniculata_contig24830.6743.1 vs. uniprot
Match: UPI001A47D353 (uncharacterized protein n=1 Tax=Ustilago hordei TaxID=120017 RepID=UPI001A47D353) HSP 1 Score: 86.7 bits (213), Expect = 3.750e-19 Identity = 46/107 (42.99%), Postives = 66/107 (61.68%), Query Frame = 1
Query: 58 KKLWNEAVRVEFEGLENLNAWTYVDSVRKGSNVVSARWLFAWKIDAQGNVTKPEARLIARGFIQQHIVDFLEVFAPTVAASSVKMVIAVAVENDWGMWQLDVKQAFI 378
K+LW EA++ E EGLE + W +D + N V +W+ K DA TK +ARLIARGF Q+ VD+ E+FAP S++ V+AVA DW + ++VKQA++
Sbjct: 6 KRLWEEAMQKELEGLEAMGTWEVMD-LPVSMNTVDTKWVLKVKTDANLVPTKFKARLIARGFTQRKGVDYTEIFAPVAPIQSIRGVLAVAAVQDWEVDSINVKQAYL 111
BLAST of mRNA_H-paniculata_contig24830.6743.1 vs. uniprot
Match: A0A2U1PR14_ARTAN (Ribonuclease H-like domain, Reverse transcriptase, RNA-dependent DNA polymerase n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1PR14_ARTAN) HSP 1 Score: 91.7 bits (226), Expect = 4.990e-19 Identity = 40/112 (35.71%), Postives = 71/112 (63.39%), Query Frame = 1
Query: 43 KKLTHKKLWNEAVRVEFEGLENLNAWTYVDSVRKGSNVVSARWLFAWKIDAQGNVTKPEARLIARGFIQQHIVDFLEVFAPTVAASSVKMVIAVAVENDWGMWQLDVKQAFI 378
++ ++ + W EA++VE + + N W + ++ KG + +W+F K DA GN+ K +AR++A+G+IQ H +DF EVFAP ++++++ +A N W + LDVK AF+
Sbjct: 654 REASNNQKWIEAMKVELDFINRNNTWE-LTTLPKGHKAIGLKWVFKTKKDANGNIVKHKARIVAKGYIQDHGIDFEEVFAPVARMETIRLLLTIAANNKWEVHHLDVKSAFL 764
BLAST of mRNA_H-paniculata_contig24830.6743.1 vs. uniprot
Match: A0A445FKH7_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Glycine soja TaxID=3848 RepID=A0A445FKH7_GLYSO) HSP 1 Score: 91.7 bits (226), Expect = 5.060e-19 Identity = 44/123 (35.77%), Postives = 76/123 (61.79%), Query Frame = 1
Query: 10 TEEPPVRFSDIKKLTHKKLWNEAVRVEFEGLENLNAWTYVDSVRKGSNVVSARWLFAWKIDAQGNVTKPEARLIARGFIQQHIVDFLEVFAPTVAASSVKMVIAVAVENDWGMWQLDVKQAFI 378
TE+ P+ F K K W +A+ E E +E W + + KG + +W+F K++ +G V K +ARL+A+G+ QQ+ V++ EVFAP ++++++A+A +N+W ++QLDVK AF+
Sbjct: 741 TEDDPLTFEQAVK---SKKWRDAMMAEIESIEKNKTWE-LTILPKGVKPIGVKWVFKTKLNEKGEVDKYKARLVAKGYAQQYGVNYTEVFAPVARLDTIRLILALAAQNNWDVFQLDVKSAFL 859 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24830.6743.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig24830.6743.1 >prot_H-paniculata_contig24830.6743.1 ID=prot_H-paniculata_contig24830.6743.1|Name=mRNA_H-paniculata_contig24830.6743.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=126bp VTDTEEPPVRFSDIKKLTHKKLWNEAVRVEFEGLENLNAWTYVDSVRKGSback to top mRNA from alignment at H-paniculata_contig24830:3354..3731+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig24830.6743.1 ID=mRNA_H-paniculata_contig24830.6743.1|Name=mRNA_H-paniculata_contig24830.6743.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=378bp|location=Sequence derived from alignment at H-paniculata_contig24830:3354..3731+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig24830:3354..3731+ >mRNA_H-paniculata_contig24830.6743.1 ID=mRNA_H-paniculata_contig24830.6743.1|Name=mRNA_H-paniculata_contig24830.6743.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at H-paniculata_contig24830:3354..3731+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |