mRNA_H-paniculata_contig2479.6728.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2479.6728.1 vs. uniprot
Match: D7FVI5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVI5_ECTSI) HSP 1 Score: 232 bits (591), Expect = 2.270e-62 Identity = 135/291 (46.39%), Postives = 181/291 (62.20%), Query Frame = 1
Query: 2158 SDFEAAPQRKILWNGGPGVLGAGAEA----GVESKKSAREEENENVRKLIAAGVLRADGTELEMEEDKEGLKSIDMEFGDVREEEAVGGEEACLLLMEKLGLNSTGIKYLRKQYPPLRGEMWYRRGSGTVGTARTVKSKKVLDVFSLEETLPDLLDFLLGME-DSGGVGLSAEQVRDIFTATPNLLGLEASEALSVTEYLRSNLGLAGEGEVAAALVGCPAMLMYNVQENLAKK-----------VRFYSRALDWSMEDVRSMLAVYPNLLSIKMEGEVVEVVDYLRWRGG 2982
+D + +++ GPG G GV S + +E E ++LIAAG+LR DG E++ EED G + E E GEEAC +L E+LG + GI +LR +YPPLRGE+WYRR + G+ KK LDV+ +EETLPDLLD LLG E + GGVGL +QVR++ T TP+L+G++ S+A V YLRS LGL+G+G++A+AL GCP MLMY+ +NL K V +Y +L W+ EDV +MLA YPNLLSIKME +V+EV+DYLR G
Sbjct: 119 ADASGFVEDEVVRESGPGGAAKGXXXXXXDGVGSLEGLSADEVE--QRLIAAGILRGDGAEIDFEEDDGGGAGVYNEI------EVSDGEEACQILEERLGFDEEGIAHLRSKYPPLRGELWYRREPASGGSKT---GKKFLDVYFVEETLPDLLDLLLGEEGEGGGVGLDRKQVREMLTTTPSLVGMDVSDAKDVAGYLRSELGLSGKGQLASALAGCPPMLMYHTWDNLRMKYDNNDDGDDDQVSYYRESLAWTNEDVAAMLAEYPNLLSIKMENDVIEVIDYLRTEVG 398
BLAST of mRNA_H-paniculata_contig2479.6728.1 vs. uniprot
Match: A0A6H5JYV1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYV1_9PHAE) HSP 1 Score: 151 bits (382), Expect = 2.390e-34 Identity = 98/227 (43.17%), Postives = 125/227 (55.07%), Query Frame = 1
Query: 2284 RKLIAAGVLRADGTELEMEEDKEGLKSIDMEFGDVREEEAVGGEEACLLLMEKLGLNSTGIKYLRKQYPPLRGEMWYRRGSGTVGTARTVKSKKVLDVFSLEETLPDLLDFLLGME-DSGGVGLSAEQVRDIFTATPNLLGLEASEALSVTEYLRSNLGLAGEGEVAAALVGCPAMLMYNVQENLAKKVRFYSRALDWSMEDVRSMLAVYPNLLSIKMEGEVVEVVD 2961
R+LIAAG+LR DG E++ +ED +G E G E E GEEAC +L E+LG + GI YLR +YPPLRGE+WYRR + G+ KK LDV+ +EETLPDLLD LLG E + GG+GL +Q R A + S + G+V A V +Y AL W+ EDV +MLA YPNLLSIKME +V+EV+D
Sbjct: 239 RRLIAAGILRGDGAEIDFDEDDDG------EAGVYNEIEVSDGEEACRILEERLGFDEEGIGYLRSKYPPLRGELWYRREPASGGSKT---GKKFLDVYFVEETLPDLLDLLLGEEGEGGGIGLDRKQARG-----------PADSSHSEQFW----------GDVDA-------------------DVSYYREALAWTSEDVAAMLAEYPNLLSIKMENDVIEVID 416
BLAST of mRNA_H-paniculata_contig2479.6728.1 vs. uniprot
Match: A0A835YN67_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN67_9STRA) HSP 1 Score: 121 bits (303), Expect = 3.250e-25 Identity = 72/198 (36.36%), Postives = 111/198 (56.06%), Query Frame = 1
Query: 2350 EGLKSIDMEFGDVREEEAVGGEEACLLLMEKLGLNSTGIKYLRKQYPPLRGEMWYRRGSGTVGTARTVKSKKVLDVFSLEETLPDLLDFLLGMEDSGGVGLSAEQVRDIFTATPNLLGLEASEALSVTEYLRSNLGLAGEGEVAAALVGCPAMLMYNVQENLAKKVRFYSRALDWSMEDVRSMLAVYPNLLSIKMEGE 2943
E ++ ID E G++ + + GG EA L+E +GL + L +++ PLRGEMWYRR +G KKVLDV+ LE+TLPDL++ L E+ +G S E++ F P+LLG EA+E + Y+R G GE+ AL CP++L+Y+ + NL K + +R L + +R ++ YP + + GE
Sbjct: 44 EDVELIDAEAGELADFD--GGAEAQRFLIEDVGLAPAAVAALAERFAPLRGEMWYRRRNG----------KKVLDVYFLEDTLPDLVELLEAPEE---LGWSQEEMAAAFAVVPSLLGREAAEVAASLRYVREXXXXEG-GELRGALSACPSLLLYDARTNLRAKHAYLTRHLGLTPAQLRELMLKYPRMFDVAFTGE 225 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2479.6728.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2479.6728.1 >prot_H-paniculata_contig2479.6728.1 ID=prot_H-paniculata_contig2479.6728.1|Name=mRNA_H-paniculata_contig2479.6728.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1047bp MRRALWTFLGAAVPPRLTWSLVTTRFNPRRLWVDPCGGTCDRHSLNIVQAback to top mRNA from alignment at H-paniculata_contig2479:11860..20831+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2479.6728.1 ID=mRNA_H-paniculata_contig2479.6728.1|Name=mRNA_H-paniculata_contig2479.6728.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8972bp|location=Sequence derived from alignment at H-paniculata_contig2479:11860..20831+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2479:11860..20831+ >mRNA_H-paniculata_contig2479.6728.1 ID=mRNA_H-paniculata_contig2479.6728.1|Name=mRNA_H-paniculata_contig2479.6728.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=6282bp|location=Sequence derived from alignment at H-paniculata_contig2479:11860..20831+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |