prot_H-paniculata_contig2479.6728.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig2479.6728.1
Unique Nameprot_H-paniculata_contig2479.6728.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length1047
Homology
BLAST of mRNA_H-paniculata_contig2479.6728.1 vs. uniprot
Match: D7FVI5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVI5_ECTSI)

HSP 1 Score: 232 bits (591), Expect = 1.370e-62
Identity = 135/291 (46.39%), Postives = 181/291 (62.20%), Query Frame = 0
Query:  695 SDFEAAPQRKILWNGGPGVLGAGAEA----GVESKKSAREEENENVRKLIAAGVLRADGTELEMEEDKEGLKSIDMEFGDVREEEAVGGEEACLLLMEKLGLNSTGIKYLRKQYPPLRGEMWYRRGSGTVGTARTVKSKKVLDVFSLEETLPDLLDFLLGME-DSGGVGLSAEQVRDIFTATPNLLGLEASEALSVTEYLRSNLGLAGEGEVAAALVGCPAMLMYNVQENLAKK-----------VRFYSRALDWSMEDVRSMLAVYPNLLSIKMEGEVVEVVDYLRWRGG 969
            +D     + +++   GPG    G       GV S +    +E E  ++LIAAG+LR DG E++ EED  G   +  E       E   GEEAC +L E+LG +  GI +LR +YPPLRGE+WYRR   + G+      KK LDV+ +EETLPDLLD LLG E + GGVGL  +QVR++ T TP+L+G++ S+A  V  YLRS LGL+G+G++A+AL GCP MLMY+  +NL  K           V +Y  +L W+ EDV +MLA YPNLLSIKME +V+EV+DYLR   G
Sbjct:  119 ADASGFVEDEVVRESGPGGAAKGXXXXXXDGVGSLEGLSADEVE--QRLIAAGILRGDGAEIDFEEDDGGGAGVYNEI------EVSDGEEACQILEERLGFDEEGIAHLRSKYPPLRGELWYRREPASGGSKT---GKKFLDVYFVEETLPDLLDLLLGEEGEGGGVGLDRKQVREMLTTTPSLVGMDVSDAKDVAGYLRSELGLSGKGQLASALAGCPPMLMYHTWDNLRMKYDNNDDGDDDQVSYYRESLAWTNEDVAAMLAEYPNLLSIKMENDVIEVIDYLRTEVG 398          
BLAST of mRNA_H-paniculata_contig2479.6728.1 vs. uniprot
Match: A0A6H5JYV1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYV1_9PHAE)

HSP 1 Score: 151 bits (382), Expect = 2.060e-34
Identity = 98/227 (43.17%), Postives = 125/227 (55.07%), Query Frame = 0
Query:  737 RKLIAAGVLRADGTELEMEEDKEGLKSIDMEFGDVREEEAVGGEEACLLLMEKLGLNSTGIKYLRKQYPPLRGEMWYRRGSGTVGTARTVKSKKVLDVFSLEETLPDLLDFLLGME-DSGGVGLSAEQVRDIFTATPNLLGLEASEALSVTEYLRSNLGLAGEGEVAAALVGCPAMLMYNVQENLAKKVRFYSRALDWSMEDVRSMLAVYPNLLSIKMEGEVVEVVD 962
            R+LIAAG+LR DG E++ +ED +G      E G   E E   GEEAC +L E+LG +  GI YLR +YPPLRGE+WYRR   + G+      KK LDV+ +EETLPDLLD LLG E + GG+GL  +Q R             A  + S   +          G+V A                    V +Y  AL W+ EDV +MLA YPNLLSIKME +V+EV+D
Sbjct:  239 RRLIAAGILRGDGAEIDFDEDDDG------EAGVYNEIEVSDGEEACRILEERLGFDEEGIGYLRSKYPPLRGELWYRREPASGGSKT---GKKFLDVYFVEETLPDLLDLLLGEEGEGGGIGLDRKQARG-----------PADSSHSEQFW----------GDVDA-------------------DVSYYREALAWTSEDVAAMLAEYPNLLSIKMENDVIEVID 416          
BLAST of mRNA_H-paniculata_contig2479.6728.1 vs. uniprot
Match: A0A835YN67_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN67_9STRA)

HSP 1 Score: 121 bits (303), Expect = 2.890e-25
Identity = 72/198 (36.36%), Postives = 111/198 (56.06%), Query Frame = 0
Query:  759 EGLKSIDMEFGDVREEEAVGGEEACLLLMEKLGLNSTGIKYLRKQYPPLRGEMWYRRGSGTVGTARTVKSKKVLDVFSLEETLPDLLDFLLGMEDSGGVGLSAEQVRDIFTATPNLLGLEASEALSVTEYLRSNLGLAGEGEVAAALVGCPAMLMYNVQENLAKKVRFYSRALDWSMEDVRSMLAVYPNLLSIKMEGE 956
            E ++ ID E G++ + +  GG EA   L+E +GL    +  L +++ PLRGEMWYRR +G          KKVLDV+ LE+TLPDL++ L   E+   +G S E++   F   P+LLG EA+E  +   Y+R      G GE+  AL  CP++L+Y+ + NL  K  + +R L  +   +R ++  YP +  +   GE
Sbjct:   44 EDVELIDAEAGELADFD--GGAEAQRFLIEDVGLAPAAVAALAERFAPLRGEMWYRRRNG----------KKVLDVYFLEDTLPDLVELLEAPEE---LGWSQEEMAAAFAVVPSLLGREAAEVAASLRYVREXXXXEG-GELRGALSACPSLLLYDARTNLRAKHAYLTRHLGLTPAQLRELMLKYPRMFDVAFTGE 225          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2479.6728.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FVI5_ECTSI1.370e-6246.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JYV1_9PHAE2.060e-3443.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YN67_9STRA2.890e-2536.36Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003690Transcription termination factor, mitochondrial/chloroplasticSMARTSM00733mt_12coord: 902..934
e-value: 1.3
score: 18.1
coord: 939..970
e-value: 32.0
score: 13.4
coord: 865..896
e-value: 200.0
score: 9.3
IPR003690Transcription termination factor, mitochondrial/chloroplasticPFAMPF02536mTERFcoord: 857..958
e-value: 5.1E-7
score: 28.9
IPR038538MTERF superfamily, mitochondrial/chloroplasticGENE3D1.25.70.10coord: 827..974
e-value: 4.8E-14
score: 54.2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..12
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 13..20
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..1046
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..20
score: 0.533

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2479contigH-paniculata_contig2479:11935..20641 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2479.6728.1mRNA_H-paniculata_contig2479.6728.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig2479 11860..20831 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig2479.6728.1 ID=prot_H-paniculata_contig2479.6728.1|Name=mRNA_H-paniculata_contig2479.6728.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1047bp
MRRALWTFLGAAVPPRLTWSLVTTRFNPRRLWVDPCGGTCDRHSLNIVQA
GRWPLVTRRNIKWEGIGSAASRRPTAVSHLNFWADDEDWDDPGDGGGDFV
ISSLSALAGEDDVDDDILDDDIFQACDSDDDDDDEDVEAMLKVVDVGVEE
DFDDDQPIDPYASLVLGHRAEDEDDEEFQWEKEEQRLNSISMDNGYSDKE
TPLVPPFPGKSEKGSSIVSSESSIPTSVREEDLELAAAAAWERAHGATWG
SLGGEAADDGRVADAVAGTNHDEVAPKRRGHNSQTKLALNLEVGDEGGDT
LTKGQRIQRLEGSGGGGGGSGNCDHGDGEGEMRSLRFSGRAKLLADVEFG
SCDSVEELRRLDSSQQQPESMAATTDRESSSRAPHLNEPLLETEPTNAGK
NSQQGKNPKQPSSPSLGKQEKEDPQISTTQIPGSSSSLPPPPTPSLPPPP
SAIVGVANNTTRRRRARASSTAAGADESLPVGFKAAAETAAVEAAAVAAA
SGGTDDVMFPTPELKGRRRRARKTSDVTASVAAAGGRSALTDAVIVPGAA
ASSKKDTQKRKKMDAAAAETSEVAAVEVGLEALGEPRAVFSDRMLPVKGD
DPTMGADGDSHVDGYMERPTGAGPGSAAAADMESLAGGDMNTEESGDLND
EEVLAVVGVKYQGQAGGGGGGEVGTEGVEENDEVVEIGGVLVRRSDFEAA
PQRKILWNGGPGVLGAGAEAGVESKKSAREEENENVRKLIAAGVLRADGT
ELEMEEDKEGLKSIDMEFGDVREEEAVGGEEACLLLMEKLGLNSTGIKYL
RKQYPPLRGEMWYRRGSGTVGTARTVKSKKVLDVFSLEETLPDLLDFLLG
MEDSGGVGLSAEQVRDIFTATPNLLGLEASEALSVTEYLRSNLGLAGEGE
VAAALVGCPAMLMYNVQENLAKKVRFYSRALDWSMEDVRSMLAVYPNLLS
IKMEGEVVEVVDYLRWRGGEKEEAGPLWDCTADFVPLVVLQETTHDGPNF
FFYAHAEIIATPPLSVVFFKQRLKTSCVFFPCAFWENQKSSLIQVW*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003690MTERF
IPR038538MTERF_sf