mRNA_H-paniculata_contig2472.6705.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2472.6705.1
Unique NamemRNA_H-paniculata_contig2472.6705.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig2472.6705.1 vs. uniprot
Match: A0A6H5KAN7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN7_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 5.710e-15
Identity = 42/78 (53.85%), Postives = 54/78 (69.23%), Query Frame = 1
Query:   19 PHLSLIARLNHSIASTSCQAERNFSTLSLLVGDLRTSLSPTKIEKMIFLRLKQESIPEVLSFLGVKTLAQDACRKNEA 252
            PHL+LIARL H I STSCQAERNFS L+ L+G LR+S+ P K+E+++FLRL +  IPEV +         DA   N+A
Sbjct:  412 PHLALIARLFHGIESTSCQAERNFSALAFLIGSLRSSMLPGKVERLMFLRLNRLYIPEVKAL-------HDAVEANKA 482          
BLAST of mRNA_H-paniculata_contig2472.6705.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 5.940e-15
Identity = 42/78 (53.85%), Postives = 54/78 (69.23%), Query Frame = 1
Query:   19 PHLSLIARLNHSIASTSCQAERNFSTLSLLVGDLRTSLSPTKIEKMIFLRLKQESIPEVLSFLGVKTLAQDACRKNEA 252
            PHL+LIARL H I STSCQAERNFS L+ L+G LR+S+ P K+E+++FLRL +  IPEV +         DA   N+A
Sbjct:  740 PHLALIARLFHGIESTSCQAERNFSALAFLIGSLRSSMLPGKVERLMFLRLNRLYIPEVKAL-------HDAVEANKA 810          
BLAST of mRNA_H-paniculata_contig2472.6705.1 vs. uniprot
Match: A0A6H5JXV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXV5_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 7.540e-12
Identity = 34/78 (43.59%), Postives = 54/78 (69.23%), Query Frame = 1
Query:   19 PHLSLIARLNHSIASTSCQAERNFSTLSLLVGDLRTSLSPTKIEKMIFLRLKQESIPEVLSFLGVKTLAQDACRKNEA 252
            P+L+ IARL+  I +TSCQAERNFS L+ L+G+LR ++ P ++E+M+ +RL +  + EV +F    + A++   KN A
Sbjct:  448 PYLAFIARLHLGIEATSCQAERNFSALAHLIGNLRCNMLPHRVERMMLIRLNRRMLDEVRAFDAAVSRAREMATKNAA 525          
BLAST of mRNA_H-paniculata_contig2472.6705.1 vs. uniprot
Match: A0A6H5JTB8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 2.360e-10
Identity = 31/59 (52.54%), Postives = 45/59 (76.27%), Query Frame = 1
Query:   19 PHLSLIARLNHSIASTSCQAERNFSTLSLLVGDLRTSLSPTKIEKMIFLRLKQESIPEV 195
            P+L+ IARL   I +TSCQAERNFS L+ L+G LR ++ P+K+E+M+F+RL +  + EV
Sbjct:  556 PYLAFIARLYLGIEATSCQAERNFSALAHLIGQLRCNMLPSKVERMMFIRLNRHLVAEV 614          
BLAST of mRNA_H-paniculata_contig2472.6705.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 2.390e-10
Identity = 31/59 (52.54%), Postives = 45/59 (76.27%), Query Frame = 1
Query:   19 PHLSLIARLNHSIASTSCQAERNFSTLSLLVGDLRTSLSPTKIEKMIFLRLKQESIPEV 195
            P+L+ IARL   I +TSCQAERNFS L+ L+G LR ++ P+K+E+M+F+RL +  + EV
Sbjct:  751 PYLAFIARLYLGIEATSCQAERNFSALAHLIGQLRCNMLPSKVERMMFIRLNRHLVAEV 809          
BLAST of mRNA_H-paniculata_contig2472.6705.1 vs. uniprot
Match: A0A6H5KJT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJT6_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 9.220e-9
Identity = 32/76 (42.11%), Postives = 48/76 (63.16%), Query Frame = 1
Query:   19 PHLSLIARLNHSIASTSCQAERNFSTLSLLVGDLRTSLSPTKIEKMIFLRLKQESIPEVLSFLGVKTLAQDACRKN 246
            P+L+ IARL   I ++SCQAERNFS LS L+G LR ++   K+E+M+ +RL +  + EV       +LA+    K+
Sbjct:  174 PYLAFIARLFLGIEASSCQAERNFSALSHLIGHLRCNMLSRKVERMMLIRLNRHLVDEVRELDAAVSLARAKAAKS 249          
BLAST of mRNA_H-paniculata_contig2472.6705.1 vs. uniprot
Match: A0A6H5KAS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS2_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 1.320e-8
Identity = 30/59 (50.85%), Postives = 41/59 (69.49%), Query Frame = 1
Query:   19 PHLSLIARLNHSIASTSCQAERNFSTLSLLVGDLRTSLSPTKIEKMIFLRLKQESIPEV 195
            P+L+ IARL   I +TSCQAERNFS  S L+G LR  + P+K E+ +F+RL +  + EV
Sbjct:  345 PYLAFIARLYLGIEATSCQAERNFSARSHLIGQLRCKILPSKFERTMFIRLNRHLVAEV 403          
BLAST of mRNA_H-paniculata_contig2472.6705.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 1.380e-8
Identity = 32/76 (42.11%), Postives = 48/76 (63.16%), Query Frame = 1
Query:   19 PHLSLIARLNHSIASTSCQAERNFSTLSLLVGDLRTSLSPTKIEKMIFLRLKQESIPEVLSFLGVKTLAQDACRKN 246
            P+L+ IARL   I ++SCQAERNFS LS L+G LR ++   K+E+M+ +RL +  + EV       +LA+    K+
Sbjct:  739 PYLAFIARLFLGIEASSCQAERNFSALSHLIGHLRCNMLSRKVERMMLIRLNRHLVDEVRELDAAVSLARAKAAKS 814          
BLAST of mRNA_H-paniculata_contig2472.6705.1 vs. uniprot
Match: A0A6H5JQI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI6_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 8.860e-8
Identity = 28/62 (45.16%), Postives = 45/62 (72.58%), Query Frame = 1
Query:   19 PHLSLIARLNHSIASTSCQAERNFSTLSLLVGDLRTSLSPTKIEKMIFLRLKQESIPEVLSF 204
            P+L+ IARL+  I +TSCQAERNFS L+ L+GDL  ++   ++E+M+ +RL +  + EV ++
Sbjct:  552 PYLAFIARLHLGIEATSCQAERNFSALAHLIGDLCCNMLSHRVERMMLVRLNKHLLAEVRAY 613          
BLAST of mRNA_H-paniculata_contig2472.6705.1 vs. uniprot
Match: A0A0N4YUQ6_NIPBR (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Nippostrongylus brasiliensis TaxID=27835 RepID=A0A0N4YUQ6_NIPBR)

HSP 1 Score: 50.1 bits (118), Expect = 1.120e-5
Identity = 27/55 (49.09%), Postives = 38/55 (69.09%), Query Frame = 1
Query:    1 VVSTKSPHLSLIARLNHSIASTSCQAERNFSTLSLLVGDLRTSLSPTKIEKMIFL 165
            V + K P + L+A+   S  +TS ++ER FST  L+VGDLR SLSP  +EK++FL
Sbjct:   70 VNAAKYPLMKLLAKRYLSAPATSAESERLFSTAGLVVGDLRRSLSPENLEKLVFL 124          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2472.6705.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5KAN7_9PHAE5.710e-1553.85Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KJ52_9PHAE5.940e-1553.85Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JXV5_9PHAE7.540e-1243.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTB8_9PHAE2.360e-1052.54Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JGG8_9PHAE2.390e-1052.54Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec... [more]
A0A6H5KJT6_9PHAE9.220e-942.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAS2_9PHAE1.320e-850.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRT6_9PHAE1.380e-842.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQI6_9PHAE8.860e-845.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0N4YUQ6_NIPBR1.120e-549.09Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ni... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2472contigH-paniculata_contig2472:2953..3213 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size262
Cds size261
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929720.5831532-CDS-H-paniculata_contig2472:2952..32131622929720.5831532-CDS-H-paniculata_contig2472:2952..3213Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2472 2953..3213 +
1691480982.057593-CDS-H-paniculata_contig2472:2952..32131691480982.057593-CDS-H-paniculata_contig2472:2952..3213Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2472 2953..3213 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2472.6705.1prot_H-paniculata_contig2472.6705.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2472 2953..3213 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2472.6705.1

>prot_H-paniculata_contig2472.6705.1 ID=prot_H-paniculata_contig2472.6705.1|Name=mRNA_H-paniculata_contig2472.6705.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=87bp
VVSTKSPHLSLIARLNHSIASTSCQAERNFSTLSLLVGDLRTSLSPTKIE
KMIFLRLKQESIPEVLSFLGVKTLAQDACRKNEAGY*
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mRNA from alignment at H-paniculata_contig2472:2953..3213+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2472.6705.1 ID=mRNA_H-paniculata_contig2472.6705.1|Name=mRNA_H-paniculata_contig2472.6705.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=261bp|location=Sequence derived from alignment at H-paniculata_contig2472:2953..3213+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGTGTCTACCAAGTCTCCTCATCTGTCTCTCATAGCCCGCCTCAACCA CTCCATCGCTTCCACCAGCTGTCAGGCGGAACGGAACTTCTCTACGCTCT CTCTCCTCGTCGGCGATCTGCGGACGAGCCTGTCGCCGACTAAGATTGAG AAGATGATATTCTTGCGCCTGAAGCAAGAGAGTATCCCCGAGGTCCTCTC TTTTCTCGGGGTCAAAACGCTCGCACAAGACGCTTGCAGAAAAAACGAGG CAGGCTATTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig2472:2953..3213+

>mRNA_H-paniculata_contig2472.6705.1 ID=mRNA_H-paniculata_contig2472.6705.1|Name=mRNA_H-paniculata_contig2472.6705.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=522bp|location=Sequence derived from alignment at H-paniculata_contig2472:2953..3213+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGTGTCTACCAAGTCTCCTCATCTGTCTCTCATAGCCCGCCTCAACCA
CTCCATCGCTTCCACCAGCTGTCAGGCGGAACGGAACTTCTCTACGCTCT
CTCTCCTCGTCGGCGATCTGCGGACGAGCCTGTCGCCGACTAAGATTGAG
AAGATGATATTCTTGCGCCTGAAGCAAGAGAGTATCCCCGAGGTCCTCTC
TTTTCTCGGGGTCAAAACGCTCGCACAAGACGCTTGCAGAAAAAACGAGG
CAGGCTATTGAGTGGTGTCTACCAAGTCTCCTCATCTGTCTCTCATAGCC
CGCCTCAACCACTCCATCGCTTCCACCAGCTGTCAGGCGGAACGGAACTT
CTCTACGCTCTCTCTCCTCGTCGGCGATCTGCGGACGAGCCTGTCGCCGA
CTAAGATTGAGAAGATGATATTCTTGCGCCTGAAGCAAGAGAGTATCCCC
GAGGTCCTCTCTTTTCTCGGGGTCAAAACGCTCGCACAAGACGCTTGCAG
AAAAAACGAGGCAGGCTATTGA
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