prot_H-paniculata_contig2469.6695.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig2469.6695.1
Unique Nameprot_H-paniculata_contig2469.6695.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length226
Homology
BLAST of mRNA_H-paniculata_contig2469.6695.1 vs. uniprot
Match: A0A6H5KKC3_9PHAE (LHCP protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKC3_9PHAE)

HSP 1 Score: 291 bits (744), Expect = 6.680e-97
Identity = 158/238 (66.39%), Postives = 181/238 (76.05%), Query Frame = 0
Query:    1 MKSVAVLAVVVASAAAFVPNAPINGRVPASRTARSSSLQM----------AKK--PAAPVASSGSAVDGLVGFDIETGGQFDPLGFGRNCPPEQMQWYRAAELKHGRICMLAAFGQFVQSYGIHWNDPSGIFDQP-QPWAAMQQVYEQRPLAFVQIFLAIFAAEVWGNKQQEQSPLGGDLGWDPLGLKPSNPEAWERVQLRELKNGRLAMIAIAGMIAQESISGLGVLQRGDPYAGFV 225
            MK     A++VASA AFVP+AP+      +  A SSSLQM          A K  PA PV+++  AVDGLVG DIETGG FDPLGFG+NCPP+QMQWYRAAELKHGR+CMLAAFGQ  Q +  HWNDPSGIFD+    W AMQQVYEQRP AF+QI LAIFA EV+GNK+QE++  GGDLG+DPLGLKPSNPEAWERVQLRELKNGRLAM AI GMI QE I+G+GVL++ D  AG  
Sbjct:    1 MKCATAFALMVASANAFVPSAPLPT---VTSRASSSSLQMIGGFGRKSKPAPKAPPARPVSTN--AVDGLVGADIETGGPFDPLGFGKNCPPQQMQWYRAAELKHGRVCMLAAFGQITQHF-THWNDPSGIFDKSGSAWGAMQQVYEQRPFAFLQIILAIFAVEVYGNKRQEENEAGGDLGFDPLGLKPSNPEAWERVQLRELKNGRLAMFAILGMIVQEHITGVGVLEKVDSLAGLA 232          
BLAST of mRNA_H-paniculata_contig2469.6695.1 vs. uniprot
Match: A0A835YT25_9STRA (Light harvesting complex protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT25_9STRA)

HSP 1 Score: 194 bits (492), Expect = 7.770e-59
Identity = 117/228 (51.32%), Postives = 145/228 (63.60%), Query Frame = 0
Query:    2 KSVAVLAVVVASAAAFVPNAPINGRVPASRTARSSSLQMAKKPAAPVASSGSAVDGLVGFDIETGGQFDPLGFGRNCPPEQMQWYRAAELKHGRICMLAAFGQFVQSYGIHWNDPSGIFDQP-QPWAAMQQVYEQRPLAFVQIFLAIFAAEVWGNKQQE---QSPLGGDLGWDPLGLKPSNPEAWERVQLRELKNGRLAMIAIAGMIAQESISGLGVLQRGDPYAGFV 225
            K+VA LA+V  S +AFV +AP+   V               + A PV   G   +GLVG D+E    +DPLGF  N  P+ + WYRAAELKHGR+ MLAA G+  QSY  H  DP  +F Q  +PW A+QQVY +RPLA  QI LAIFA E  G  QQ    Q+P  GDL WDPL LKPS+PE WE+VQLRELKNGRLAM+AIAG   QE+++G G +++   YAG +
Sbjct:    4 KAVAGLALVAGSVSAFVQHAPLRTGV-------------VSRSAGPVMKLGPGGEGLVGSDLELA-TWDPLGFTNNQNPDTINWYRAAELKHGRVAMLAALGEIFQSY-YHLPDP--VFSQSARPWDALQQVYAERPLAVAQILLAIFACEAIGQAQQAKPGQAP--GDLNWDPLNLKPSDPETWEKVQLRELKNGRLAMMAIAGFFVQENLTGQGPIEQ--IYAGHI 210          
BLAST of mRNA_H-paniculata_contig2469.6695.1 vs. uniprot
Match: FCP_CHAMQ (Fucoxanthin-chlorophyll a-c binding protein, chloroplastic n=1 Tax=Chattonella marina var. antiqua TaxID=859642 RepID=FCP_CHAMQ)

HSP 1 Score: 177 bits (448), Expect = 3.250e-52
Identity = 108/216 (50.00%), Postives = 136/216 (62.96%), Query Frame = 0
Query:    3 SVAVLAVVVASAAAFVPNAPINGRVPASRTARSSSLQMAKKPAAPVASSGSAVDGLVGFDIETGGQFDPLGFGRNCPPEQMQWYRAAELKHGRICMLAAFGQFVQSYGIHWNDPSGIFDQP-QPWAAMQQVYEQRPLAFVQIFLAIFAAEVWGNKQQEQ-SPLGGDLGWDPLGLKPSNPEAWERVQLRELKNGRLAMIAIAGMIAQESISGLGVLQ 216
            S AV A++V SA+AF+  A  N               +AK   A     GS+ +GL+G D+E   +FDPLGF  N  P  ++WYRAAELKHGR+ MLAA GQ VQS+  H  DP  +F +  +PW A+ +V  +RPLA VQI LAIFA E  G   Q +     GDLGWDPL L+ SN E +ER QLRELKNGRLAMIAI  MI QE+++G GV++
Sbjct:    4 SAAVAALMVGSASAFLAPAQFNS--------------VAKSSGALSMKLGSSAEGLIGSDLELP-EFDPLGFTNNPAPGALEWYRAAELKHGRVAMLAALGQLVQSF-YHLPDP--VFSESAKPWQALVKVCNERPLAAVQIGLAIFACEAIGQANQAKPGQAAGDLGWDPLNLRGSNEEIFERAQLRELKNGRLAMIAITAMIVQENLTGYGVIE 201          
BLAST of mRNA_H-paniculata_contig2469.6695.1 vs. uniprot
Match: A0A0G4GYX1_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GYX1_VITBC)

HSP 1 Score: 172 bits (435), Expect = 3.070e-50
Identity = 107/220 (48.64%), Postives = 138/220 (62.73%), Query Frame = 0
Query:    3 SVAVLAVVVAS-AAAFVPNAPINGRVPASRTARSSSLQMAKKPAAPVASSGSAVDGLVGFDIETGGQFDPLGFGRNCPPEQMQWYRAAELKHGRICMLAAFGQFVQSYGIHWNDPSGIFDQPQP-WAAMQQVYEQRPLAFVQIFLAIFAAEVWGNKQQE---QSPLGGDLGWDPLGLKPSNPEAWERVQLRELKNGRLAMIAIAGMIAQESISGLGVLQR 217
            ++A+LAVV A  A+AFVPNA    + P      + S+++           G+   GL+G D+E   +FDPLGF  N   E ++WYRAAELKHGR+CMLAA GQ VQS+  H  DPSG+FD     + A  +V  +RP A +QI LAIFA EV G K Q    Q+P  GDL +DP  ++  +PE WE  QLRELKNGRLAMI I  M+ QE+ISG GV+ +
Sbjct:    8 TLALLAVVAAEDASAFVPNASPLLKSPKRSLRTTPSMKL-----------GTNAQGLIGSDLEWP-EFDPLGFTNNISDETLEWYRAAELKHGRVCMLAALGQLVQSFW-HLPDPSGVFDSTDSSFGAFNKVVSERPWAAIQILLAIFAVEVLGAKTQAKPGQAP--GDLDFDPFKVRSDDPEIWEATQLRELKNGRLAMIGITAMLVQEAISGKGVIAQ 212          
BLAST of mRNA_H-paniculata_contig2469.6695.1 vs. uniprot
Match: W7TCK1_9STRA (Chloroplast light harvesting protein isoform 4 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TCK1_9STRA)

HSP 1 Score: 170 bits (430), Expect = 1.740e-49
Identity = 93/168 (55.36%), Postives = 115/168 (68.45%), Query Frame = 0
Query:   52 GSAVDGLVGFDIETGGQFDPLGFGRNCPPEQMQWYRAAELKHGRICMLAAFGQFVQSYGIHWNDPSGIFDQ-PQPWAAMQQVYEQRPLAFVQIFLAIFAAEVWGN-KQQEQSPLGGDLGWDPLGLKPSNPEAWERVQLRELKNGRLAMIAIAGMIAQESISGLGVLQR 217
            GS+  GL G DIE   +FDPLGF  N  PE + WYRAAELKHGR+ MLAA GQ VQ +     D SG+F    +P  A+ +V  +RPLA +QI LAIFA E  G   Q +     GDLGWDPL LK  +PE + +VQ RELKNGRLAMIAIAGM+ QE+++GLGV+++
Sbjct:   38 GSSAQGLAGSDIEFP-EFDPLGFTNNPKPETLDWYRAAELKHGRVAMLAALGQIVQHF-YTLPDASGVFSAGDRPIEALNKVVAERPLAAIQIGLAIFAVEALGQFNQAKPGQAPGDLGWDPLNLKSDDPEIYAKVQNRELKNGRLAMIAIAGMLVQENLTGLGVIEQ 203          
BLAST of mRNA_H-paniculata_contig2469.6695.1 vs. uniprot
Match: A0A835Z156_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z156_9STRA)

HSP 1 Score: 165 bits (417), Expect = 1.450e-47
Identity = 99/215 (46.05%), Postives = 131/215 (60.93%), Query Frame = 0
Query:    3 SVAVLAVVVASAAAFVPNAPINGRVPASRTARSSSLQMAKKPAAPVASSGSAVDGLVGFDIETGGQFDPLGFGRNCPPEQMQWYRAAELKHGRICMLAAFGQFVQSYGIHWNDPSGIFDQPQPWAAMQQVYEQRPLAFVQIFLAIFAAEVWGNKQQEQSPLGGDLGWDPLGLKPSNPEAWERVQLRELKNGRLAMIAIAGMIAQESISGLGVLQR 217
            +VA LA+V A A+AFVP++    +V  +R A SS++QM             + DGLVG  +ETGG +DP         E + WYRAAELKHGR+CMLAA G  VQ Y   W  P  +F   +   A+ Q+Y +RP A  QI LAI A EV G+  Q+ +   GDL WDPLGL P +PE    +QL+ELKNGRLAM+A AG   QE+++G G +++
Sbjct:    6 AVAALALV-AGASAFVPSSFSGAQV--ARVASSSAMQM-------------SADGLVGASVETGGVWDPANLASKASEEDLAWYRAAELKHGRVCMLAAVGCLVQGY---WQLPDPVFSNTKAVDAVAQIYTERPGAIYQILLAIAAIEVLGSSIQKYT-APGDLKWDPLGLAPEDPEELATLQLKELKNGRLAMVATAGFFLQEALTGQGAVEQ 200          
BLAST of mRNA_H-paniculata_contig2469.6695.1 vs. uniprot
Match: A0A0G4F0S3_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F0S3_VITBC)

HSP 1 Score: 158 bits (400), Expect = 6.100e-45
Identity = 90/189 (47.62%), Postives = 121/189 (64.02%), Query Frame = 0
Query:   31 RTARSSS--LQMAKKPAAPVASSGSAVDGLVGFDIETGGQFDPLGFGRNCPPEQMQWYRAAELKHGRICMLAAFGQFVQSYGIHWNDPSGIFDQPQPWAAMQQVYEQRPLAFVQIFLAIFAAEVWGNKQQEQSPLGGDLGWDPLGLKPSNPEAWERVQLRELKNGRLAMIAIAGMIAQESISGLGVLQR 217
            R +RS S  +QMA  P        S   GLVG DI+    FDPLG  +    E ++WYRAAELKHGR+ MLAA G  VQ+    +  P   F +  P  A+ +++ +RPLA +QI  AI A EV GN+ Q Q+  GGDL WDPLG+KP++PE + ++QLRELKNGRLAMI++ GM AQE+++  G + +
Sbjct:   36 RASRSPSRTMQMALDP--------SFAGGLVGNDIDAP-NFDPLGLSKTADDETLKWYRAAELKHGRVAMLAALGFLVQNI---YQLPDSPFQEANPINAVYKLWSERPLAIMQILTAIAAIEVLGNQVQLQTEDGGDLKWDPLGIKPNDPEEFRKMQLRELKNGRLAMISVLGMTAQEALTDQGPIDQ 212          
BLAST of mRNA_H-paniculata_contig2469.6695.1 vs. uniprot
Match: A0A0G4GRR2_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GRR2_9ALVE)

HSP 1 Score: 154 bits (389), Expect = 1.940e-43
Identity = 101/214 (47.20%), Postives = 130/214 (60.75%), Query Frame = 0
Query:    7 LAVVVASAAAFVPNAPINGRVPASRTARSSSLQMAKKPAAPVASSGSAVDGLVGFDIETGGQFDPLGFGRNCPPEQMQWYRAAELKHGRICMLAAFGQFVQSYGIHWNDPSGIFDQPQPWAAMQQVYEQRPLAFVQIFLAIFAAEVWGNK-QQEQSPLGGDLGWDPLGLKPSNPEAWERVQLRELKNGRLAMIAIAGMIAQESISGLGVLQRGD 219
            L++ V+S  AFVP++  NG + +SR +RS    +  K        G    G+ G D E    FDP+GF +N P E ++WYRAAELKHGR+CMLAA G  V   GI  + P   F+      A+ ++ E+RP A +QI LAIFA E  G K Q E    GGDLG+DPLGLKPS+PE  E  QLRE+KNGRLAMIAI G  AQE ++   ++   D
Sbjct:    8 LSLSVSSCTAFVPSS--NGLL-SSRPSRSGKSSLDMKL-------GRNAVGMPGTDFELP-DFDPIGFTQNAPLETLEWYRAAELKHGRVCMLAALGNIVA--GIT-HLPDTCFEGKGSLGAVYKIMEERPWAGLQIVLAIFAVEALGQKIQSEPGREGGDLGFDPLGLKPSDPELLEATQLREIKNGRLAMIAILGQWAQEYVTNRPIIDFDD 207          
BLAST of mRNA_H-paniculata_contig2469.6695.1 vs. uniprot
Match: W7TEK9_9STRA (Fucoxanthin chlorophyll a c binding protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TEK9_9STRA)

HSP 1 Score: 149 bits (377), Expect = 2.010e-41
Identity = 81/163 (49.69%), Postives = 110/163 (67.48%), Query Frame = 0
Query:   55 VDGLVGFDIETGGQFDPLGFGRNCPPEQMQWYRAAELKHGRICMLAAFGQFVQSYGIHWNDPSGIFDQPQPWAAMQQVYEQRPLAFVQIFLAIFAAEVWGNKQQEQSPLGGDLGWDPLGLKPSNPEAWERVQLRELKNGRLAMIAIAGMIAQESISGLGVLQR 217
            + G+VG D+E   +FDPLG  +N   E + WYRAAELKHGR+CMLA+ G  VQ     ++ P G F+  +P  A+ +V  +RPLA VQI +AI A EV G   Q+ +   GDL +DPLGLKP +PE    +QL+ELKNGRLAM+A AG+ AQE ++G G +++
Sbjct:   53 ISGIVGSDVEVP-EFDPLGLAKNKDEETLGWYRAAELKHGRVCMLASVGYLVQGL---YHLPDGPFEASKPIDALLKVSSERPLAAVQIAIAIAALEVLGASIQKYT-APGDLTFDPLGLKPEDPEELAELQLKELKNGRLAMLATAGLAAQEYVTGQGPVEQ 210          
BLAST of mRNA_H-paniculata_contig2469.6695.1 vs. uniprot
Match: A0A0G4GDB0_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GDB0_VITBC)

HSP 1 Score: 147 bits (372), Expect = 8.070e-41
Identity = 95/222 (42.79%), Postives = 130/222 (58.56%), Query Frame = 0
Query:    1 MKSVAV-----LAVVVASAAAFVPNAPINGRVPASRTARSSSLQMAKKPAAPVASSGSAVDGLVGFDIETGGQFDPLGFGRNCPPEQMQWYRAAELKHGRICMLAAFGQFVQSYGIHWNDPSGIFDQPQPWAAMQQVYEQRPLAFVQIFLAIFAAEVWGNKQQEQSPLGGDLGWDPLGLKPSNPEAWERVQLRELKNGRLAMIAIAGMIAQESISGLGVLQR 217
            MK VAV     +AV     AAFVP+AP+   +P  R  RS++ +M             +V+ ++G D+ETGG FDPL F  +     +   RA ELKHGRI MLA  G FVQS G+H  DP  +F +P+P +A+ +V  +RP A  QI  AI A E+   +Q  ++   GDLG+     K S+PE + + QLRELKNGRLAMI I GM+ QE ++G  V ++
Sbjct:    1 MKCVAVASLLLIAVAYGEEAAFVPSAPLRS-LPTRRALRSTTPKM-------------SVEEMIGADVETGGVFDPLKFSED--EASLFRRRAVELKHGRIAMLACLGYFVQSAGVHLPDP--VFSEPRPLSALTKVLTERPWAAAQIVAAIAAIELGPGRQDYENKAPGDLGYFGDSFKNSDPEEFRKDQLRELKNGRLAMIGIMGMMVQEGLTGQSVWEQ 204          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2469.6695.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KKC3_9PHAE6.680e-9766.39LHCP protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A... [more]
A0A835YT25_9STRA7.770e-5951.32Light harvesting complex protein n=2 Tax=Tribonema... [more]
FCP_CHAMQ3.250e-5250.00Fucoxanthin-chlorophyll a-c binding protein, chlor... [more]
A0A0G4GYX1_VITBC3.070e-5048.64Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
W7TCK1_9STRA1.740e-4955.36Chloroplast light harvesting protein isoform 4 n=2... [more]
A0A835Z156_9STRA1.450e-4746.05Light harvesting complex protein n=1 Tax=Tribonema... [more]
A0A0G4F0S3_VITBC6.100e-4547.62Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A0G4GRR2_9ALVE1.940e-4347.20Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
W7TEK9_9STRA2.010e-4149.69Fucoxanthin chlorophyll a c binding protein n=3 Ta... [more]
A0A0G4GDB0_VITBC8.070e-4142.79Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022796Chlorophyll A-B binding proteinPFAMPF00504Chloroa_b-bindcoord: 66..207
e-value: 1.5E-37
score: 129.6
IPR023329Chlorophyll a/b binding domain superfamilyGENE3D1.10.3460.10coord: 52..221
e-value: 1.3E-35
score: 124.9
IPR001344Chlorophyll A-B binding protein, plantPANTHERPTHR21649CHLOROPHYLL A/B BINDING PROTEINcoord: 1..211
NoneNo IPR availablePANTHERPTHR21649:SF63coord: 1..211
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 12..16
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..11
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 17..225
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..16
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..16
score: 0.713
NoneNo IPR availableSUPERFAMILY103511Chlorophyll a-b binding proteincoord: 67..216

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2469contigH-paniculata_contig2469:15694..19429 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2469.6695.1mRNA_H-paniculata_contig2469.6695.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig2469 15483..20443 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig2469.6695.1 ID=prot_H-paniculata_contig2469.6695.1|Name=mRNA_H-paniculata_contig2469.6695.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=226bp
MKSVAVLAVVVASAAAFVPNAPINGRVPASRTARSSSLQMAKKPAAPVAS
SGSAVDGLVGFDIETGGQFDPLGFGRNCPPEQMQWYRAAELKHGRICMLA
AFGQFVQSYGIHWNDPSGIFDQPQPWAAMQQVYEQRPLAFVQIFLAIFAA
EVWGNKQQEQSPLGGDLGWDPLGLKPSNPEAWERVQLRELKNGRLAMIAI
AGMIAQESISGLGVLQRGDPYAGFV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022796Chloroa_b-bind
IPR023329Chlorophyll_a/b-bd_dom_sf
IPR001344Chloro_AB-bd_pln