mRNA_H-paniculata_contig2469.6694.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2469.6694.1
Unique NamemRNA_H-paniculata_contig2469.6694.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2469.6694.1 vs. uniprot
Match: A0A6H5KEQ8_9PHAE (ANAPC4_WD40 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEQ8_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 7.590e-15
Identity = 96/243 (39.51%), Postives = 108/243 (44.44%), Query Frame = 2 
Query: 1541 SRTVYSDRFIPSRFGSVLESGSPFLAGSSASSLPSPRAAADASVGLRNSQSIDGTNGR---------------------------------------SLASFG------GRAGSAAAAAA----------------RREAIDPGGIRGTEGAPAPGQGMAAGVAGGTGXXXXXXXXXX---------GDAASVVGVPQYWPYGSSVTDAQREGQTMLNMLLRSELLGADGVSSPGRPDGAGAA 2059
            S+ +YSDRFIP+RFGSVLE+GSPFL G  + S  + R              +  TNG                                         LA +G      G   SA   A                 R +A DPGGIRGTEG          GVAG  G  XXXXXXXX           A   VG P+YWPYGSS TDAQREGQTMLNMLLRSELLG +     G P+ AGAA
Sbjct:  119 SQAIYSDRFIPARFGSVLETGSPFLVGGGSHSTAAGRG-------------VHATNGNXXXXXXXXXXXXXXXXXXXXXXGGQRGXXXXXXXXXXXXGLAGYGSGFSPRGLIFSAGGPAXXXXXXXXXXXXXXXXXRLDAADPGGIRGTEG--------GGGVAGRQGRPXXXXXXXXXXXXXXXXGSPALPGVGSPEYWPYGSSATDAQREGQTMLNMLLRSELLGTESPGGRG-PEQAGAA 339
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BLAST of mRNA_H-paniculata_contig2469.6694.1 vs. uniprot
Match: D8LDI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDI2_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 2.360e-6
Identity = 29/40 (72.50%), Postives = 32/40 (80.00%), Query Frame = 2 
Query:  620 MASDRPGETRCTPPRPPAPPRLVSGASPGSSRGKLRSEYQ 739
            MA+DR GE   TPPR PA  R +SG+SPGSSRGKLRSEYQ
Sbjct:    1 MAADRQGELGWTPPRAPAVSRRLSGSSPGSSRGKLRSEYQ 40
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2469.6694.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KEQ8_9PHAE7.590e-1539.51ANAPC4_WD40 domain-containing protein n=1 Tax=Ecto... [more]
D8LDI2_ECTSI2.360e-672.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2469contigH-paniculata_contig2469:11825..15316 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-15_000500.1
Exons2
Model size2083
Cds size1464
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2469.6694.1prot_H-paniculata_contig2469.6694.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2469 11825..14697 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929718.758192-CDS-H-paniculata_contig2469:11824..131681622929718.758192-CDS-H-paniculata_contig2469:11824..13168Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2469 11825..13168 -
1691480981.1564057-CDS-H-paniculata_contig2469:11824..131681691480981.1564057-CDS-H-paniculata_contig2469:11824..13168Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2469 11825..13168 -
1622929718.7842684-CDS-H-paniculata_contig2469:14577..146971622929718.7842684-CDS-H-paniculata_contig2469:14577..14697Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2469 14578..14697 -
1691480981.168581-CDS-H-paniculata_contig2469:14577..146971691480981.168581-CDS-H-paniculata_contig2469:14577..14697Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2469 14578..14697 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929718.877648-UTR-H-paniculata_contig2469:14697..153161622929718.877648-UTR-H-paniculata_contig2469:14697..15316Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2469 14698..15316 -
1691480981.1771774-UTR-H-paniculata_contig2469:14697..153161691480981.1771774-UTR-H-paniculata_contig2469:14697..15316Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2469 14698..15316 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2469.6694.1

>prot_H-paniculata_contig2469.6694.1 ID=prot_H-paniculata_contig2469.6694.1|Name=mRNA_H-paniculata_contig2469.6694.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=488bp
MASDRPGETRCTPPRPPAPPRLVSGASPGSSRGKLRSEYQARLGGMSVKK
RRAGPLKFPGQSGGAKATGTAGASQLSATARTPPPPPPGVRQTSLLDFCT
VTSDRSAAVASGLPRPGDHSQASAVVVTPQYYSAGTVPREGGVEGAQAAA
MAAGLVAARVSQESGRGDGDKDLYKEAVDVQAVVSPSPVPSRARLFVDNM
DTADMDVEEVDHTKEEQNEEEEEERRRRRQATAIPGYSTPTPPPHTDTTR
RASPGAFSPATPVRRSTPPDSRGLLGSGAATALGGHFGGSGGKGAGCSGA
GGARMVDSRTVYSDRFIPSRFGSVLESGSPFLAGSSASSLPSPRAAADAS
VGLRNSQSIDGTNGRSLASFGGRAGSAAAAAARREAIDPGGIRGTEGAPA
PGQGMAAGVAGGTGAGVDGAATPGGDAASVVGVPQYWPYGSSVTDAQREG
QTMLNMLLRSELLGADGVSSPGRPDGAGAAATGLLSDA
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mRNA from alignment at H-paniculata_contig2469:11825..15316-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2469.6694.1 ID=mRNA_H-paniculata_contig2469.6694.1|Name=mRNA_H-paniculata_contig2469.6694.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3492bp|location=Sequence derived from alignment at H-paniculata_contig2469:11825..15316- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTAGGGTGTCGGTTGATTATCTTGCCGTGCTCGTGTCTGCTGGACAGGT
TGTCCATGTGGGTGAGATCCTAGCCCTATATCGGAACTGAGGACATCTCC
TTTTGTGGTGGTCTTTCACTACGCGTCGAGGTGGAATCTCTCGGGGTGCG
ACAAGGAACGATAGGAAAGTGGAGGAGAGAAGGCGGGGAGAGAAGAGACC
ATCTGTGTTGCACGTGTAGGCTAGCACAGGTTTTACAGCCTGTGCCCCTG
TATTGCGGCAGCCAGATCGTTTGATCGTTCCTTCTTCCAGTCTTCTCTGT
ATTCTGGCTGTGCGACCGAAGAAAGCTGGGTATCACAACAACCATCCTCT
TAGGGTCAGGGTGCTTCAGGCTCTTCTAATAGCATCATCAGGAACTTCGA
GTGGGAGGGTCAAAAGCTCACTGCTGCACCAGCCGTGTGCTAGTGGCAAC
TGGATCATTGTCAAGGGCTTGGTTTGGTTTTGCTGGGGAGGCCTGGCGCG
AACAGTCAGTAGGGTGGAGTTTGCGCGAAATTGTAATCACGGCTCTAACT
AGCGCGGCATACAGCTAGGCAGAGCAGAAAGCAGTGGTTGCAGCACTTGA
GTCCGCTCTACTGGACGAGATGGCCTCCGACCGTCCTGGAGAGACGAGAT
GTACACCCCCACGGCCGCCCGCTCCGCCCCGACTTGTGTCTGGAGCAAGC
CCAGGCTCATCAAGAGGCAAGCTGCGATCCGAGTACCAGGTGATTTTCCA
TGGTGTCATGCTCTGTCGGTAATCTTCTGATTATTTCAGAGCAATTCTCG
CCTGGAGCTTGCTCTTCGGAATTGACAGGGCTGTGATGTCTCTCTGCACG
GCGTATCTAGCAGAGTGTGCGGAGGATGGACGAGCGCCATCATTTGGCCA
TTTTTGTTGCCCAACTACGGTAAAGAACGAATTGCACGGCTTTTCCAAGC
GCTAATATGATGTTATATGTTGACTGTGTAGACCAATAGACATGCATTTT
GTGTTGGCGTTGTTTCGCGCAAAAATGTGCCTCTGATACGAAGTTGAGTC
CGCAGGTGCGACGGTGGTACGAAAGGAGGGTCTCTCACTGCTGTGAACAA
AAGATACATATGTGTTGGCTGTGGTCGAGTACACTTTATTCAGAGAAGAG
TCCGATTGTATAGTACGGATATTCGATATGCCATGGAGCTAACGTCGTCG
GCGCAGACGATGGCGAGTACACTCGGAAAACAGCATAGCATTTTTATTGG
ACAACCACGACCTTTCCTTTGACCTCTGATTCCTCCACCCTACTGGCAGC
CTGAGCAGAACGTTCAGGACGCAAGAGATACGAGTAAATGTCTGCCCCAA
GCTGTTGTGGCGTATATGTGGGCTGTACCGGGCAAATTGCGTTGGTCATG
GATGTTGGGGTGTTGTGATACTTGTTGGTGCGGTGTGTTGGTGTTCGATA
ACTGCTTTTTCAAACCCCTGTGCACCCGGGCGCTGTCGTCTCGTCTATCA
CAGACGAAGGATCAGCAGGAAAGCTCGACGGTGCCGACCGACCTGGCGTA
TCTTGTATCGTGCTAGGATAGCCGTATCCACGTCTAATACTCGTCGAGTC
TTTGCGATACAAACCAAACTTGCTTTCGAGCCTTCCGAGAGATTCAACTT
GTATTCGGTGCCGCGCAGGAATTGCTGTACTGGTATCCTATTCTCCTGGT
GGATCTGATGTCACTTCGTGGGCTGGTAATAAAGAGCAATACTTGTATAT
ACAACAAATAAATTGCAAATTCGCATGATTCGCCTGGGGGTTTTGATTGC
TGATCGGCTTCACGGCGTCTAATTTGCAAATTTCGGCAAGCAATTTATTT
ATCTCCTCTTTGAAGTACTTCCTAGTTTACATATATTGAACATCGGTAGG
GCCTGCTTGCTTCACAATACGACCACGTTTTCCATGGTACATGGTCAGAA
AGGTATACACACGTAAACATAACCCTCACAGTCGCTTCCTGCACTGAAAC
CGCCACGAAGTTACGTACACCTCGCGCATGCAAGCACCACGACCCTTCCT
TCACCTCTCAATCTTACCGCTGGCCAAACTAACTTTCTCCCCGCCCACCT
TTCCCAACCTTCGCCCATGGGAATGCAATGAAATCTCGACCTTGACAGGC
GAGGCTGGGTGGCATGAGCGTAAAGAAGCGGCGAGCTGGACCCCTCAAGT
TTCCGGGACAATCAGGTGGAGCAAAGGCGACGGGGACAGCAGGCGCTTCA
CAGCTGTCGGCTACTGCAAGGACGCCGCCGCCGCCGCCGCCTGGGGTCCG
CCAGACCTCCCTGCTTGACTTTTGCACCGTGACTTCCGATCGCTCCGCGG
CTGTGGCCTCGGGGTTGCCACGTCCAGGTGATCACTCACAAGCCTCGGCT
GTAGTTGTAACCCCGCAATATTACTCCGCCGGAACAGTGCCAAGAGAAGG
AGGAGTAGAAGGAGCGCAAGCGGCGGCGATGGCGGCTGGATTGGTTGCAG
CACGAGTGTCGCAGGAAAGCGGGAGAGGAGACGGCGACAAGGACCTATAC
AAAGAGGCTGTTGACGTTCAGGCGGTGGTCTCACCCTCTCCGGTGCCTTC
CCGAGCTCGACTTTTCGTAGACAACATGGACACCGCCGACATGGATGTTG
AAGAAGTAGACCACACTAAGGAAGAACAGAACGAGGAGGAGGAAGAGGAG
CGGCGACGGCGGCGGCAAGCTACCGCCATTCCCGGGTATTCCACGCCAAC
ACCGCCACCGCATACGGATACAACGAGGAGAGCAAGCCCGGGCGCGTTTT
CACCAGCGACCCCCGTCCGACGCTCCACGCCGCCGGACTCCCGCGGTTTG
CTCGGGAGCGGCGCGGCAACGGCGTTGGGCGGACACTTCGGGGGGAGTGG
TGGCAAAGGCGCCGGCTGCAGTGGCGCCGGCGGCGCGAGAATGGTGGACA
GCCGCACCGTCTACAGCGATCGTTTCATACCCTCGCGTTTCGGCTCCGTG
TTGGAGAGCGGTAGCCCGTTTTTGGCAGGGAGCTCTGCGTCATCACTTCC
ATCTCCGCGCGCTGCTGCCGACGCTTCGGTAGGGCTTCGAAATTCTCAGA
GCATCGATGGCACCAACGGTCGCTCGCTAGCAAGCTTCGGCGGCCGTGCA
GGCAGCGCGGCCGCCGCCGCCGCCAGACGAGAGGCTATAGACCCCGGCGG
CATCCGAGGGACGGAGGGAGCGCCGGCGCCGGGACAAGGAATGGCGGCGG
GCGTTGCCGGCGGTACGGGTGCAGGAGTGGACGGAGCGGCGACGCCAGGA
GGAGACGCTGCGTCGGTAGTTGGCGTTCCGCAGTACTGGCCATATGGCTC
GAGCGTCACGGACGCTCAACGAGAGGGTCAGACGATGTTGAATATGCTGC
TGAGGAGTGAGTTGCTGGGAGCGGACGGCGTGTCGTCGCCGGGGCGGCCA
GATGGCGCGGGGGCGGCCGCGACGGGTTTGTTGTCTGATGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig2469:11825..15316-

>mRNA_H-paniculata_contig2469.6694.1 ID=mRNA_H-paniculata_contig2469.6694.1|Name=mRNA_H-paniculata_contig2469.6694.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2928bp|location=Sequence derived from alignment at H-paniculata_contig2469:11825..15316- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCTCCGACCGTCCTGGAGAGACGAGATGTACACCCCCACGGCCGCC
CGCTCCGCCCCGACTTGTGTCTGGAGCAAGCCCAGGCTCATCAAGAGGCA
AGCTGCGATCCGAGTACCAGATGGCCTCCGACCGTCCTGGAGAGACGAGA
TGTACACCCCCACGGCCGCCCGCTCCGCCCCGACTTGTGTCTGGAGCAAG
CCCAGGCTCATCAAGAGGCAAGCTGCGATCCGAGTACCAGGCGAGGCTGG
GTGGCATGAGCGTAAAGAAGCGGCGAGCTGGACCCCTCAAGTTTCCGGGA
CAATCAGGTGGAGCAAAGGCGACGGGGACAGCAGGCGCTTCACAGCTGTC
GGCTACTGCAAGGACGCCGCCGCCGCCGCCGCCTGGGGTCCGCCAGACCT
CCCTGCTTGACTTTTGCACCGTGACTTCCGATCGCTCCGCGGCTGTGGCC
TCGGGGTTGCCACGTCCAGGTGATCACTCACAAGCCTCGGCTGTAGTTGT
AACCCCGCAATATTACTCCGCCGGAACAGTGCCAAGAGAAGGAGGAGTAG
AAGGAGCGCAAGCGGCGGCGATGGCGGCTGGATTGGTTGCAGCACGAGTG
TCGCAGGAAAGCGGGAGAGGAGACGGCGACAAGGACCTATACAAAGAGGC
TGTTGACGTTCAGGCGGTGGTCTCACCCTCTCCGGTGCCTTCCCGAGCTC
GACTTTTCGTAGACAACATGGACACCGCCGACATGGATGTTGAAGAAGTA
GACCACACTAAGGAAGAACAGAACGAGGAGGAGGAAGAGGAGCGGCGACG
GCGGCGGCAAGCTACCGCCATTCCCGGGTATTCCACGCCAACACCGCCAC
CGCATACGGATACAACGAGGAGAGCAAGCCCGGGCGCGTTTTCACCAGCG
ACCCCCGTCCGACGCTCCACGCCGCCGGACTCCCGCGGTTTGCTCGGGAG
CGGCGCGGCAACGGCGTTGGGCGGACACTTCGGGGGGAGTGGTGGCAAAG
GCGCCGGCTGCAGTGGCGCCGGCGGCGCGAGAATGGTGGACAGCCGCACC
GTCTACAGCGATCGTTTCATACCCTCGCGTTTCGGCTCCGTGTTGGAGAG
CGGTAGCCCGTTTTTGGCAGGGAGCTCTGCGTCATCACTTCCATCTCCGC
GCGCTGCTGCCGACGCTTCGGTAGGGCTTCGAAATTCTCAGAGCATCGAT
GGCACCAACGGTCGCTCGCTAGCAAGCTTCGGCGGCCGTGCAGGCAGCGC
GGCCGCCGCCGCCGCCAGACGAGAGGCTATAGACCCCGGCGGCATCCGAG
GGACGGAGGGAGCGCCGGCGCCGGGACAAGGAATGGCGGCGGGCGTTGCC
GGCGGTACGGGTGCAGGAGTGGACGGAGCGGCGACGCCAGGAGGAGACGC
TGCGTCGGTAGTTGGCGTTCCGCAGTACTGGCCATATGGCTCGAGCGTCA
CGGACGCTCAACGAGAGGGTCAGACGATGTTGAATATGCTGCTGAGGAGT
GAGTTGCTGGGAGCGGACGGCGTGTCGTCGCCGGGGCGGCCAGATGGCGC
GGGGGCGGCCGCGACGGGTTTGTTGTCTGATGCGGCGAGGCTGGGTGGCA
TGAGCGTAAAGAAGCGGCGAGCTGGACCCCTCAAGTTTCCGGGACAATCA
GGTGGAGCAAAGGCGACGGGGACAGCAGGCGCTTCACAGCTGTCGGCTAC
TGCAAGGACGCCGCCGCCGCCGCCGCCTGGGGTCCGCCAGACCTCCCTGC
TTGACTTTTGCACCGTGACTTCCGATCGCTCCGCGGCTGTGGCCTCGGGG
TTGCCACGTCCAGGTGATCACTCACAAGCCTCGGCTGTAGTTGTAACCCC
GCAATATTACTCCGCCGGAACAGTGCCAAGAGAAGGAGGAGTAGAAGGAG
CGCAAGCGGCGGCGATGGCGGCTGGATTGGTTGCAGCACGAGTGTCGCAG
GAAAGCGGGAGAGGAGACGGCGACAAGGACCTATACAAAGAGGCTGTTGA
CGTTCAGGCGGTGGTCTCACCCTCTCCGGTGCCTTCCCGAGCTCGACTTT
TCGTAGACAACATGGACACCGCCGACATGGATGTTGAAGAAGTAGACCAC
ACTAAGGAAGAACAGAACGAGGAGGAGGAAGAGGAGCGGCGACGGCGGCG
GCAAGCTACCGCCATTCCCGGGTATTCCACGCCAACACCGCCACCGCATA
CGGATACAACGAGGAGAGCAAGCCCGGGCGCGTTTTCACCAGCGACCCCC
GTCCGACGCTCCACGCCGCCGGACTCCCGCGGTTTGCTCGGGAGCGGCGC
GGCAACGGCGTTGGGCGGACACTTCGGGGGGAGTGGTGGCAAAGGCGCCG
GCTGCAGTGGCGCCGGCGGCGCGAGAATGGTGGACAGCCGCACCGTCTAC
AGCGATCGTTTCATACCCTCGCGTTTCGGCTCCGTGTTGGAGAGCGGTAG
CCCGTTTTTGGCAGGGAGCTCTGCGTCATCACTTCCATCTCCGCGCGCTG
CTGCCGACGCTTCGGTAGGGCTTCGAAATTCTCAGAGCATCGATGGCACC
AACGGTCGCTCGCTAGCAAGCTTCGGCGGCCGTGCAGGCAGCGCGGCCGC
CGCCGCCGCCAGACGAGAGGCTATAGACCCCGGCGGCATCCGAGGGACGG
AGGGAGCGCCGGCGCCGGGACAAGGAATGGCGGCGGGCGTTGCCGGCGGT
ACGGGTGCAGGAGTGGACGGAGCGGCGACGCCAGGAGGAGACGCTGCGTC
GGTAGTTGGCGTTCCGCAGTACTGGCCATATGGCTCGAGCGTCACGGACG
CTCAACGAGAGGGTCAGACGATGTTGAATATGCTGCTGAGGAGTGAGTTG
CTGGGAGCGGACGGCGTGTCGTCGCCGGGGCGGCCAGATGGCGCGGGGGC
GGCCGCGACGGGTTTGTTGTCTGATGCG
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