mRNA_H-paniculata_contig24686.6691.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24686.6691.1
Unique NamemRNA_H-paniculata_contig24686.6691.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig24686.6691.1 vs. uniprot
Match: D7FJ49_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ49_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 2.640e-18
Identity = 42/68 (61.76%), Postives = 53/68 (77.94%), Query Frame = 1 
Query:    1 RFVISEMSGSEGERAKFKGGVVFASSEDMANICQYYLDRPEERQAIAKQGRQLYEMHGNESEILRSPV 204
            RF++SEMSGS+ ERAKF GGVVFA  E +A  CQ+YL RPE R +IA+ GR+L+E H  E++ILR PV
Sbjct:  133 RFIVSEMSGSDSERAKFSGGVVFAPPERLAETCQFYLQRPELRMSIAQSGRRLFEQH-LEADILRRPV 199
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BLAST of mRNA_H-paniculata_contig24686.6691.1 vs. uniprot
Match: A0A6H5K7W6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7W6_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 2.960e-16
Identity = 41/68 (60.29%), Postives = 52/68 (76.47%), Query Frame = 1 
Query:    1 RFVISEMSGSEGERAKFKGGVVFASSEDMANICQYYLDRPEERQAIAKQGRQLYEMHGNESEILRSPV 204
            RF++SEMSGS+ ERAKF GGVVFA  E +A  CQ+YL RP  R +IA+ GR+L+E H  E++ILR PV
Sbjct:  299 RFIVSEMSGSDSERAKFSGGVVFAPPERLAETCQFYLHRPGLRMSIAESGRRLFEQH-LEADILRRPV 365
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24686.6691.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FJ49_ECTSI2.640e-1861.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K7W6_9PHAE2.960e-1660.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24686contigH-paniculata_contig24686:906..1157 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size252
Cds size234
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929718.4590907-UTR-H-paniculata_contig24686:905..9231622929718.4590907-UTR-H-paniculata_contig24686:905..923Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24686 906..923 +
1691480980.9925017-UTR-H-paniculata_contig24686:905..9231691480980.9925017-UTR-H-paniculata_contig24686:905..923Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24686 906..923 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929718.4727142-CDS-H-paniculata_contig24686:923..11571622929718.4727142-CDS-H-paniculata_contig24686:923..1157Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24686 924..1157 +
1691480981.0033998-CDS-H-paniculata_contig24686:923..11571691480981.0033998-CDS-H-paniculata_contig24686:923..1157Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24686 924..1157 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24686.6691.1prot_H-paniculata_contig24686.6691.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24686 924..1157 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24686.6691.1

>prot_H-paniculata_contig24686.6691.1 ID=prot_H-paniculata_contig24686.6691.1|Name=mRNA_H-paniculata_contig24686.6691.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=78bp
MSGSEGERAKFKGGVVFASSEDMANICQYYLDRPEERQAIAKQGRQLYEM
HGNESEILRSPVEDLLTRRAQLSALNI*
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mRNA from alignment at H-paniculata_contig24686:906..1157+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24686.6691.1 ID=mRNA_H-paniculata_contig24686.6691.1|Name=mRNA_H-paniculata_contig24686.6691.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=252bp|location=Sequence derived from alignment at H-paniculata_contig24686:906..1157+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGATTCGTCATATCAGAGATGAGCGGCAGCGAGGGCGAGAGAGCTAAGTT
TAAAGGAGGCGTGGTTTTTGCATCATCAGAGGATATGGCGAACATCTGCC
AATATTACCTCGACCGACCTGAAGAAAGACAAGCTATCGCAAAGCAGGGT
CGCCAACTGTACGAGATGCATGGAAACGAGTCTGAAATTTTGCGATCACC
CGTTGAGGATCTTCTTACACGAAGAGCACAATTATCAGCACTTAATATCT
AG
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Coding sequence (CDS) from alignment at H-paniculata_contig24686:906..1157+

>mRNA_H-paniculata_contig24686.6691.1 ID=mRNA_H-paniculata_contig24686.6691.1|Name=mRNA_H-paniculata_contig24686.6691.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=468bp|location=Sequence derived from alignment at H-paniculata_contig24686:906..1157+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCGGCAGCGAGGGCGAGAGAGCTAAGTTTAAAGGAGGCGTGGTTTT
TGCATCATCAGAGGATATGGCGAACATCTGCCAATATTACCTCGACCGAC
CTGAAGAAAGACAAGCTATCGCAAAGCAGGGTCGCCAACTGTACGAGATG
CATGGAAACGAGTCTGAAATTTTGCGATCACCCGTTGAGGATCTTCTTAC
ACGAAGAGCACAATTATCAGCACTTAATATCTAGATGAGCGGCAGCGAGG
GCGAGAGAGCTAAGTTTAAAGGAGGCGTGGTTTTTGCATCATCAGAGGAT
ATGGCGAACATCTGCCAATATTACCTCGACCGACCTGAAGAAAGACAAGC
TATCGCAAAGCAGGGTCGCCAACTGTACGAGATGCATGGAAACGAGTCTG
AAATTTTGCGATCACCCGTTGAGGATCTTCTTACACGAAGAGCACAATTA
TCAGCACTTAATATCTAG
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