mRNA_H-paniculata_contig24666.6686.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24666.6686.1
Unique NamemRNA_H-paniculata_contig24666.6686.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig24666.6686.1 vs. uniprot
Match: A0A6H5KMN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMN1_9PHAE)

HSP 1 Score: 233 bits (595), Expect = 1.320e-69
Identity = 121/160 (75.62%), Postives = 131/160 (81.88%), Query Frame = 1
Query:   25 RLLCTNADLHPTRKGIFAMDTRGGTVATGSKDATVAIAFLTPTGLRLDRVLGDAGGSERFHEKVIKGVDIRD-NMVASCGDDSNVRVSDIRECSNGNFGVSHRLDRVHAG-ACHTVRWHPGDDNLLLTAGLDSTVKLFDLRRPEVAVHVFRGHCPYALAR 498
            RLL T  DLHPTRKGIFAMD+ G  VATGSKD TVAIA L PTG+  DRVLGD GGSE FHEKV+KGV +RD N VASCGDDSNVRVSD+R  S+ +FGVS RLD VH G ACHTVRWHP DDNLLL+AGLDSTV L+DLRR    +HVFRGHCPYALAR
Sbjct:  506 RLLSTMDDLHPTRKGIFAMDSHGTRVATGSKDTTVAIASLGPTGIEHDRVLGDPGGSEAFHEKVVKGVSLRDENTVASCGDDSNVRVSDLR--SSSSFGVSQRLDGVHGGRACHTVRWHPLDDNLLLSAGLDSTVNLYDLRRLAAPLHVFRGHCPYALAR 663          
BLAST of mRNA_H-paniculata_contig24666.6686.1 vs. uniprot
Match: D7G8U5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8U5_ECTSI)

HSP 1 Score: 229 bits (584), Expect = 2.520e-67
Identity = 119/160 (74.38%), Postives = 129/160 (80.62%), Query Frame = 1
Query:   25 RLLCTNADLHPTRKGIFAMDTRGGTVATGSKDATVAIAFLTPTGLRLDRVLGDAGGSERFHEKVIKGVDIRD-NMVASCGDDSNVRVSDIRECSNGNFGVSHRLDRVHAG-ACHTVRWHPGDDNLLLTAGLDSTVKLFDLRRPEVAVHVFRGHCPYALAR 498
            RLL T  DLHPTRKGIFAMD+ G  VATGSKD TVAIA L PTG+  DRVLGD GGSE FHEKV+KGV +RD N VASCGDDSNVRVSD+R  S+ + GVS RLD VH G ACHTVRWHP DDN LL+AGLDSTV L+DLRR    +HVFRGHCPYALAR
Sbjct:  629 RLLSTMDDLHPTRKGIFAMDSHGTRVATGSKDTTVAIASLRPTGIERDRVLGDPGGSEAFHEKVVKGVSLRDENTVASCGDDSNVRVSDLR--SSSSVGVSQRLDGVHGGRACHTVRWHPLDDNRLLSAGLDSTVNLYDLRRLAAPLHVFRGHCPYALAR 786          
BLAST of mRNA_H-paniculata_contig24666.6686.1 vs. uniprot
Match: A0A835ZGB7_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGB7_9STRA)

HSP 1 Score: 145 bits (367), Expect = 1.020e-37
Identity = 85/160 (53.12%), Postives = 102/160 (63.75%), Query Frame = 1
Query:   28 LLCTNADLHPTRKGIFAMDTRGGTVATGSKDATVAIAFLTPTG--LRLDRVLGDAGGSERFHEKVIKGVDIRD-NMVASCGDDSNVRVSDIRECSNGNFGVSHRLDRVHAGACHTVRWHPGDDNLLLTAGLDSTVKLFDLRRPEVAVHVFRGHCPYALAR 498
            L+    DLH   KGIF+M    G +AT SKD TVAI+ L   G  + LDRVLGD   +E  H  VIK V +RD   VASCGDD++VRV DIR        V   L+ VH+   HTVRWHP D++LLLTAGLD+ VKLFDLR+P  A   +RGH P+AL R
Sbjct:  366 LVAQACDLHS--KGIFSMHMHRGVIATASKDRTVAISKLVGDGRGIALDRVLGD---TETLHAGVIKDVQLRDATTVASCGDDASVRVCDIRAARGYYIAVG--LEDVHSACAHTVRWHPTDEHLLLTAGLDTVVKLFDLRKPNAAAVEYRGHVPFALPR 518          
BLAST of mRNA_H-paniculata_contig24666.6686.1 vs. uniprot
Match: R1CA86_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CA86_EMIHU)

HSP 1 Score: 66.6 bits (161), Expect = 1.020e-9
Identity = 54/155 (34.84%), Postives = 67/155 (43.23%), Query Frame = 1
Query:   43 ADLHPTRKGIFAMDTRGGTVATGSKDATVAIAFLTPTGLRLDRVLGDAGGSERFHEKVIKGVDIRD-NMVASCGDDSNVRVSDIRECSNGNFGVSHRLDRVHAGACHTVRWHPGDDN--LLLTAGLDSTVKLFDLRRPEVAVHVFRGHCPYALAR 498
            + L P   GIFAM   GG V T SKD TVA++ L       D  L      +  H  VIK V  RD N+ AS G   N+RV D R                            GD +  LLL+AG D  +KL+D R P   +H  +GH    +AR
Sbjct:  205 SQLEPQSGGIFAMHEAGGRVLTASKDGTVALSMLA------DDCLRPGASWDELHSGVIKSVCWRDGNVFASAGRGGNLRVVDPRA---------------------------GDPSAGLLLSAGYDLQIKLWDARAPSRPLHTLQGHVAPRVAR 326          
BLAST of mRNA_H-paniculata_contig24666.6686.1 vs. uniprot
Match: A0A448ZQL5_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZQL5_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 5.140e-8
Identity = 57/174 (32.76%), Postives = 81/174 (46.55%), Query Frame = 1
Query:   22 RRLLCTNADLHPTRKGIFAMDT----RGGT---VATGSKDATVAIAFLTPTGLRLDRVLGDAGGS-----ERFHEKVIKGVDIRDN---MVASCGDDSNVRVSDIRECSNGNFGVSHRLDRVHAGACHTVRWHPGDDNLLLTAGLDSTVKLFDLRRPEVAVHVFRGHCPYALAR 498
            R L  T  + H +  GIF MD     R G+   +ATGSKD TVA++ L         + G    +      RFH   +  V ++D+   ++AS  DD  V V D R    G+  V+ R+   H    H+V W P  + +L+TAGLD  V+++D R     V    GH P    R
Sbjct:  517 RLLQRTGKEYHGS--GIFCMDAGLPDRAGSDTVIATGSKDKTVAVSTL-------GSIAGGGASALPVWRSRFHTAKVGAVRLKDSSSPLLASASDDGIVAVHDHRX--EGSXPVA-RIGDAHDRP-HSVVWDPCHEFVLVTAGLDPVVRVWDRRNLSAPVASLEGHVPTRSGR 677          
BLAST of mRNA_H-paniculata_contig24666.6686.1 vs. uniprot
Match: A0A804IRQ1_MUSAM ((wild Malaysian banana) hypothetical protein n=2 Tax=Musa TaxID=4640 RepID=A0A804IRQ1_MUSAM)

HSP 1 Score: 59.3 bits (142), Expect = 3.800e-7
Identity = 47/162 (29.01%), Postives = 77/162 (47.53%), Query Frame = 1
Query:   28 LLCTNADLHPTRKGIFAMDTRGGTVATGSKDATVAIAFLTPTG-LRLDRVLGDAGGSERFHEKVIKGVDIRDNM--VASCGDDSNVRVSDIRECSNGNFGVSHRLDRVHAGACHTVRWHPGDDNLLLTAGLDSTVKLFDLRRPEVAVHV-FRGHCPYALARC 501
            ++  + +LH    G+++MD     +AT SKD++V ++ LTP G L  +R +         H  VI+GV   D    +A CG D  + V D R        +      +H+   +TV W+  ++ L+L+AG D  + L+D+R     VH   +GH       C
Sbjct:  272 VVAKSTELHTG--GVYSMDRFSCWIATASKDSSVGVSRLTPAGELVAERNITG------HHSGVIRGVCFGDGKERLADCGVDGRICVLDPRSPEPCALTIK----SLHSTGVNTVEWNKWNNFLILSAGSDPILHLYDIRNAAGPVHSQLQGHVESNTGTC 421          
BLAST of mRNA_H-paniculata_contig24666.6686.1 vs. uniprot
Match: A0A7S4A9E7_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4A9E7_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.200e-6
Identity = 51/166 (30.72%), Postives = 73/166 (43.98%), Query Frame = 1
Query:   49 LHPTRK-----GIFAMDTRGGTV---------ATGSKDATVAIAFLTPTGLRLDRVLGDAGGSERFHEKVIKGVDIRD---NMVASCGDDSNVRVSDIRECSNGNFGVSH----RLDRVHAGACHTVRWHPGDDNLLLTAGLDSTVKLFDLRRPEVAVHVFRGHCP 483
            LH T K     GIF MD    +V          TGSKD ++AI+ L    L             RFH   +  V ++    +++AS  DD  V + D R    G+   S     +L+  H    H+V W P ++ +L+TAGLD  VK++D R     +    GH P
Sbjct:  124 LHRTGKEYHSSGIFCMDVLSSSVNSSSSEMMICTGSKDKSIAISSLAS--LATSSTATKPTWRSRFHNAKVGAVKLQSPTSSLLASASDDGIVALHDFRTNGLGSGSSSSSLVSKLEDAHDRP-HSVVWDPCNEFILVTAGLDPIVKVWDHRNLSEPIVSLEGHVP 286          
BLAST of mRNA_H-paniculata_contig24666.6686.1 vs. uniprot
Match: A0A7S2RLP2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RLP2_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.320e-5
Identity = 25/49 (51.02%), Postives = 30/49 (61.22%), Query Frame = 1
Query:  358 HTVRWHPGDDNLLLTAGLDSTVKLFDLRRPEVAVHVFRGHCPYALARCA 504
            H+V WHP   +LLLTAG DS V+L+DLR     +  F  H P ALA  A
Sbjct:   29 HSVEWHPCSKDLLLTAGFDSVVRLWDLRHLGAPLRCFDDHVPKALAGAA 77          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24666.6686.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5KMN1_9PHAE1.320e-6975.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8U5_ECTSI2.520e-6774.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZGB7_9STRA1.020e-3753.13WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
R1CA86_EMIHU1.020e-934.84Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]
A0A448ZQL5_9STRA5.140e-832.76Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A804IRQ1_MUSAM3.800e-729.01(wild Malaysian banana) hypothetical protein n=2 T... [more]
A0A7S4A9E7_9STRA1.200e-630.72Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A7S2RLP2_9STRA1.320e-551.02Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24666contigH-paniculata_contig24666:254..1513 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score231.5
Seed ortholog evalue3.1e-58
Seed eggNOG ortholog2880.D7G8U5
Preferred nameWDR59
KEGG koko:K03678,ko:K10752,ko:K20409
KEGG Pathwayko03018,ko04150,ko04218,map03018,map04150,map04218
KEGG ModuleM00391
Hectar predicted targeting categorymitochondrion
GOsGO:0000323,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005773,GO:0005774,GO:0006950,GO:0007154,GO:0008150,GO:0009267,GO:0009605,GO:0009966,GO:0009967,GO:0009987,GO:0009991,GO:0010646,GO:0010647,GO:0016020,GO:0023051,GO:0023056,GO:0031090,GO:0031667,GO:0031668,GO:0031669,GO:0032006,GO:0032008,GO:0032991,GO:0033554,GO:0034198,GO:0035859,GO:0042594,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0061700,GO:0065007,GO:0071496,GO:0098588,GO:0098805,GO:0098852,GO:1902531,GO:1902533,GO:1990928
EggNOG free text desc.chromatin organization
EggNOG OGsKOG0264@1,KOG0264@2759
Ec32 ortholog descriptionWD40/YVTN repeat-like-containing domain
Ec32 orthologEc-15_004260.1
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03036
Exons2
Model size528
Cds size528
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929717.7422414-CDS-H-paniculata_contig24666:253..4991622929717.7422414-CDS-H-paniculata_contig24666:253..499Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24666 254..499 +
1691480980.8501332-CDS-H-paniculata_contig24666:253..4991691480980.8501332-CDS-H-paniculata_contig24666:253..499Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24666 254..499 +
1622929717.8535576-CDS-H-paniculata_contig24666:1231..15131622929717.8535576-CDS-H-paniculata_contig24666:1231..1513Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24666 1232..1513 +
1691480980.8625011-CDS-H-paniculata_contig24666:1231..15131691480980.8625011-CDS-H-paniculata_contig24666:1231..1513Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24666 1232..1513 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24666.6686.1prot_H-paniculata_contig24666.6686.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24666 254..1513 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24666.6686.1

>prot_H-paniculata_contig24666.6686.1 ID=prot_H-paniculata_contig24666.6686.1|Name=mRNA_H-paniculata_contig24666.6686.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=176bp
MLVFCFARRLLCTNADLHPTRKGIFAMDTRGGTVATGSKDATVAIAFLTP
TGLRLDRVLGDAGGSERFHEKVIKGVDIRDNMVASCGDDSNVRVSDIREC
SNGNFGVSHRLDRVHAGACHTVRWHPGDDNLLLTAGLDSTVKLFDLRRPE
VAVHVFRGHCPYALARCADGSWNDT*
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mRNA from alignment at H-paniculata_contig24666:254..1513+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24666.6686.1 ID=mRNA_H-paniculata_contig24666.6686.1|Name=mRNA_H-paniculata_contig24666.6686.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1260bp|location=Sequence derived from alignment at H-paniculata_contig24666:254..1513+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTTGTGTTTTGTTTCGCGCGCAGGCTTTTGTGCACGAACGCCGATCT TCATCCCACTCGCAAAGGAATTTTCGCGATGGACACGCGAGGTGGCACGG TGGCAACCGGGTCGAAGGACGCAACCGTTGCTATTGCTTTCCTTACGCCC ACGGGACTGCGGCTCGACCGAGTGCTGGGAGACGCAGGAGGAAGCGAGAG ATTTCACGAAAAAGTGATCAAGGGCGTGGACATCAGAGACAACATGGTGA CTGTTATCCGTTGCGCCTTTTTATCTCTCGCTCCGTCTTTGTGTGTGTGT CTATCTGCTTATCTCTCCTTCTGTCTCTCTCTCGTGTCGACTTCGCGACA CAGACCTAACGACATCATTTATCATCCGTCACTCACTGCTACAAGTTCGT AACGCATCCGTCGCATCAACGAGTTCACACTGTAAGCCTTTCTCGTCGTG GGCACCTCGGGTGCGATCAATCTCCCAGAGTCCGGTAAAGGGTTTTGCCT CAGCCTTTCGGGGTGTTAAAAAAAAAAAAAATCTCCCAGGGTCGCCCCCT TGGTAATATTTTTGCACGCATTGCAGTACCTGCCCAAGATCTGAACGCGC AATCACTCTAATTGATAGATAGGCAATTCCTCTTTTAACACTGAGACAAC CTCCCCCGATTTCATTCTCAATTGGGCTTTCTCAAATCATCGCAACAACC GCCTCGAGACATCACCGCCACCACTATCATCATCATCATCACGCCAAACA CTTGAAATGATGTACCGTGACACGCAATACATGTCCCGAAAAACGGCCAT ACGTTGTTTTTTTTTCGCAACAACTCACTAGACAATTGAGCCATTGCTTT CAGAGTTGTTGCGTGTTGCTCCGATTACTACGTAGCTCTTGTGCCTTGAA TGTTTGACCCCGACGTTTACTCAGTAAGCGTTCATACATTACCCCCGTCC TTTTTTTGTATGCACTATTTCGCTGCAGGTCGCGTCCTGCGGAGATGACT CGAACGTTCGCGTATCTGATATCCGAGAGTGCTCCAACGGAAACTTCGGG GTCTCCCATCGGCTAGACCGCGTTCATGCCGGGGCATGCCACACGGTTCG GTGGCACCCGGGTGACGACAATCTGCTGCTGACGGCTGGATTGGATTCTA CGGTGAAGCTCTTCGATCTACGGCGGCCTGAAGTGGCCGTGCATGTCTTT CGGGGCCACTGTCCCTACGCTCTGGCGAGGTGCGCGGACGGCAGTTGGAA CGACACATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig24666:254..1513+

>mRNA_H-paniculata_contig24666.6686.1 ID=mRNA_H-paniculata_contig24666.6686.1|Name=mRNA_H-paniculata_contig24666.6686.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1056bp|location=Sequence derived from alignment at H-paniculata_contig24666:254..1513+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTTGTGTTTTGTTTCGCGCGCAGGCTTTTGTGCACGAACGCCGATCT
TCATCCCACTCGCAAAGGAATTTTCGCGATGGACACGCGAGGTGGCACGG
TGGCAACCGGGTCGAAGGACGCAACCGTTGCTATTGCTTTCCTTACGCCC
ACGGGACTGCGGCTCGACCGAGTGCTGGGAGACGCAGGAGGAAGCGAGAG
ATTTCACGAAAAAGTGATCAAGGGCGTGGACATCAGAGACAACATGATGC
TTGTGTTTTGTTTCGCGCGCAGGCTTTTGTGCACGAACGCCGATCTTCAT
CCCACTCGCAAAGGAATTTTCGCGATGGACACGCGAGGTGGCACGGTGGC
AACCGGGTCGAAGGACGCAACCGTTGCTATTGCTTTCCTTACGCCCACGG
GACTGCGGCTCGACCGAGTGCTGGGAGACGCAGGAGGAAGCGAGAGATTT
CACGAAAAAGTGATCAAGGGCGTGGACATCAGAGACAACATGGTCGCGTC
CTGCGGAGATGACTCGAACGTTCGCGTATCTGATATCCGAGAGTGCTCCA
ACGGAAACTTCGGGGTCTCCCATCGGCTAGACCGCGTTCATGCCGGGGCA
TGCCACACGGTTCGGTGGCACCCGGGTGACGACAATCTGCTGCTGACGGC
TGGATTGGATTCTACGGTGAAGCTCTTCGATCTACGGCGGCCTGAAGTGG
CCGTGCATGTCTTTCGGGGCCACTGTCCCTACGCTCTGGCGAGGTGCGCG
GACGGCAGTTGGAACGACACATGAGTCGCGTCCTGCGGAGATGACTCGAA
CGTTCGCGTATCTGATATCCGAGAGTGCTCCAACGGAAACTTCGGGGTCT
CCCATCGGCTAGACCGCGTTCATGCCGGGGCATGCCACACGGTTCGGTGG
CACCCGGGTGACGACAATCTGCTGCTGACGGCTGGATTGGATTCTACGGT
GAAGCTCTTCGATCTACGGCGGCCTGAAGTGGCCGTGCATGTCTTTCGGG
GCCACTGTCCCTACGCTCTGGCGAGGTGCGCGGACGGCAGTTGGAACGAC
ACATGA
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