mRNA_H-paniculata_contig24666.6686.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig24666.6686.1 vs. uniprot
Match: A0A6H5KMN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMN1_9PHAE) HSP 1 Score: 233 bits (595), Expect = 1.320e-69 Identity = 121/160 (75.62%), Postives = 131/160 (81.88%), Query Frame = 1
Query: 25 RLLCTNADLHPTRKGIFAMDTRGGTVATGSKDATVAIAFLTPTGLRLDRVLGDAGGSERFHEKVIKGVDIRD-NMVASCGDDSNVRVSDIRECSNGNFGVSHRLDRVHAG-ACHTVRWHPGDDNLLLTAGLDSTVKLFDLRRPEVAVHVFRGHCPYALAR 498
RLL T DLHPTRKGIFAMD+ G VATGSKD TVAIA L PTG+ DRVLGD GGSE FHEKV+KGV +RD N VASCGDDSNVRVSD+R S+ +FGVS RLD VH G ACHTVRWHP DDNLLL+AGLDSTV L+DLRR +HVFRGHCPYALAR
Sbjct: 506 RLLSTMDDLHPTRKGIFAMDSHGTRVATGSKDTTVAIASLGPTGIEHDRVLGDPGGSEAFHEKVVKGVSLRDENTVASCGDDSNVRVSDLR--SSSSFGVSQRLDGVHGGRACHTVRWHPLDDNLLLSAGLDSTVNLYDLRRLAAPLHVFRGHCPYALAR 663
BLAST of mRNA_H-paniculata_contig24666.6686.1 vs. uniprot
Match: D7G8U5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8U5_ECTSI) HSP 1 Score: 229 bits (584), Expect = 2.520e-67 Identity = 119/160 (74.38%), Postives = 129/160 (80.62%), Query Frame = 1
Query: 25 RLLCTNADLHPTRKGIFAMDTRGGTVATGSKDATVAIAFLTPTGLRLDRVLGDAGGSERFHEKVIKGVDIRD-NMVASCGDDSNVRVSDIRECSNGNFGVSHRLDRVHAG-ACHTVRWHPGDDNLLLTAGLDSTVKLFDLRRPEVAVHVFRGHCPYALAR 498
RLL T DLHPTRKGIFAMD+ G VATGSKD TVAIA L PTG+ DRVLGD GGSE FHEKV+KGV +RD N VASCGDDSNVRVSD+R S+ + GVS RLD VH G ACHTVRWHP DDN LL+AGLDSTV L+DLRR +HVFRGHCPYALAR
Sbjct: 629 RLLSTMDDLHPTRKGIFAMDSHGTRVATGSKDTTVAIASLRPTGIERDRVLGDPGGSEAFHEKVVKGVSLRDENTVASCGDDSNVRVSDLR--SSSSVGVSQRLDGVHGGRACHTVRWHPLDDNRLLSAGLDSTVNLYDLRRLAAPLHVFRGHCPYALAR 786
BLAST of mRNA_H-paniculata_contig24666.6686.1 vs. uniprot
Match: A0A835ZGB7_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGB7_9STRA) HSP 1 Score: 145 bits (367), Expect = 1.020e-37 Identity = 85/160 (53.12%), Postives = 102/160 (63.75%), Query Frame = 1
Query: 28 LLCTNADLHPTRKGIFAMDTRGGTVATGSKDATVAIAFLTPTG--LRLDRVLGDAGGSERFHEKVIKGVDIRD-NMVASCGDDSNVRVSDIRECSNGNFGVSHRLDRVHAGACHTVRWHPGDDNLLLTAGLDSTVKLFDLRRPEVAVHVFRGHCPYALAR 498
L+ DLH KGIF+M G +AT SKD TVAI+ L G + LDRVLGD +E H VIK V +RD VASCGDD++VRV DIR V L+ VH+ HTVRWHP D++LLLTAGLD+ VKLFDLR+P A +RGH P+AL R
Sbjct: 366 LVAQACDLHS--KGIFSMHMHRGVIATASKDRTVAISKLVGDGRGIALDRVLGD---TETLHAGVIKDVQLRDATTVASCGDDASVRVCDIRAARGYYIAVG--LEDVHSACAHTVRWHPTDEHLLLTAGLDTVVKLFDLRKPNAAAVEYRGHVPFALPR 518
BLAST of mRNA_H-paniculata_contig24666.6686.1 vs. uniprot
Match: R1CA86_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CA86_EMIHU) HSP 1 Score: 66.6 bits (161), Expect = 1.020e-9 Identity = 54/155 (34.84%), Postives = 67/155 (43.23%), Query Frame = 1
Query: 43 ADLHPTRKGIFAMDTRGGTVATGSKDATVAIAFLTPTGLRLDRVLGDAGGSERFHEKVIKGVDIRD-NMVASCGDDSNVRVSDIRECSNGNFGVSHRLDRVHAGACHTVRWHPGDDN--LLLTAGLDSTVKLFDLRRPEVAVHVFRGHCPYALAR 498
+ L P GIFAM GG V T SKD TVA++ L D L + H VIK V RD N+ AS G N+RV D R GD + LLL+AG D +KL+D R P +H +GH +AR
Sbjct: 205 SQLEPQSGGIFAMHEAGGRVLTASKDGTVALSMLA------DDCLRPGASWDELHSGVIKSVCWRDGNVFASAGRGGNLRVVDPRA---------------------------GDPSAGLLLSAGYDLQIKLWDARAPSRPLHTLQGHVAPRVAR 326
BLAST of mRNA_H-paniculata_contig24666.6686.1 vs. uniprot
Match: A0A448ZQL5_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZQL5_9STRA) HSP 1 Score: 62.0 bits (149), Expect = 5.140e-8 Identity = 57/174 (32.76%), Postives = 81/174 (46.55%), Query Frame = 1
Query: 22 RRLLCTNADLHPTRKGIFAMDT----RGGT---VATGSKDATVAIAFLTPTGLRLDRVLGDAGGS-----ERFHEKVIKGVDIRDN---MVASCGDDSNVRVSDIRECSNGNFGVSHRLDRVHAGACHTVRWHPGDDNLLLTAGLDSTVKLFDLRRPEVAVHVFRGHCPYALAR 498
R L T + H + GIF MD R G+ +ATGSKD TVA++ L + G + RFH + V ++D+ ++AS DD V V D R G+ V+ R+ H H+V W P + +L+TAGLD V+++D R V GH P R
Sbjct: 517 RLLQRTGKEYHGS--GIFCMDAGLPDRAGSDTVIATGSKDKTVAVSTL-------GSIAGGGASALPVWRSRFHTAKVGAVRLKDSSSPLLASASDDGIVAVHDHRX--EGSXPVA-RIGDAHDRP-HSVVWDPCHEFVLVTAGLDPVVRVWDRRNLSAPVASLEGHVPTRSGR 677
BLAST of mRNA_H-paniculata_contig24666.6686.1 vs. uniprot
Match: A0A804IRQ1_MUSAM ((wild Malaysian banana) hypothetical protein n=2 Tax=Musa TaxID=4640 RepID=A0A804IRQ1_MUSAM) HSP 1 Score: 59.3 bits (142), Expect = 3.800e-7 Identity = 47/162 (29.01%), Postives = 77/162 (47.53%), Query Frame = 1
Query: 28 LLCTNADLHPTRKGIFAMDTRGGTVATGSKDATVAIAFLTPTG-LRLDRVLGDAGGSERFHEKVIKGVDIRDNM--VASCGDDSNVRVSDIRECSNGNFGVSHRLDRVHAGACHTVRWHPGDDNLLLTAGLDSTVKLFDLRRPEVAVHV-FRGHCPYALARC 501
++ + +LH G+++MD +AT SKD++V ++ LTP G L +R + H VI+GV D +A CG D + V D R + +H+ +TV W+ ++ L+L+AG D + L+D+R VH +GH C
Sbjct: 272 VVAKSTELHTG--GVYSMDRFSCWIATASKDSSVGVSRLTPAGELVAERNITG------HHSGVIRGVCFGDGKERLADCGVDGRICVLDPRSPEPCALTIK----SLHSTGVNTVEWNKWNNFLILSAGSDPILHLYDIRNAAGPVHSQLQGHVESNTGTC 421
BLAST of mRNA_H-paniculata_contig24666.6686.1 vs. uniprot
Match: A0A7S4A9E7_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4A9E7_9STRA) HSP 1 Score: 57.8 bits (138), Expect = 1.200e-6 Identity = 51/166 (30.72%), Postives = 73/166 (43.98%), Query Frame = 1
Query: 49 LHPTRK-----GIFAMDTRGGTV---------ATGSKDATVAIAFLTPTGLRLDRVLGDAGGSERFHEKVIKGVDIRD---NMVASCGDDSNVRVSDIRECSNGNFGVSH----RLDRVHAGACHTVRWHPGDDNLLLTAGLDSTVKLFDLRRPEVAVHVFRGHCP 483
LH T K GIF MD +V TGSKD ++AI+ L L RFH + V ++ +++AS DD V + D R G+ S +L+ H H+V W P ++ +L+TAGLD VK++D R + GH P
Sbjct: 124 LHRTGKEYHSSGIFCMDVLSSSVNSSSSEMMICTGSKDKSIAISSLAS--LATSSTATKPTWRSRFHNAKVGAVKLQSPTSSLLASASDDGIVALHDFRTNGLGSGSSSSSLVSKLEDAHDRP-HSVVWDPCNEFILVTAGLDPIVKVWDHRNLSEPIVSLEGHVP 286
BLAST of mRNA_H-paniculata_contig24666.6686.1 vs. uniprot
Match: A0A7S2RLP2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RLP2_9STRA) HSP 1 Score: 52.4 bits (124), Expect = 1.320e-5 Identity = 25/49 (51.02%), Postives = 30/49 (61.22%), Query Frame = 1
Query: 358 HTVRWHPGDDNLLLTAGLDSTVKLFDLRRPEVAVHVFRGHCPYALARCA 504
H+V WHP +LLLTAG DS V+L+DLR + F H P ALA A
Sbjct: 29 HSVEWHPCSKDLLLTAGFDSVVRLWDLRHLGAPLRCFDDHVPKALAGAA 77 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24666.6686.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig24666.6686.1 >prot_H-paniculata_contig24666.6686.1 ID=prot_H-paniculata_contig24666.6686.1|Name=mRNA_H-paniculata_contig24666.6686.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=176bp MLVFCFARRLLCTNADLHPTRKGIFAMDTRGGTVATGSKDATVAIAFLTPback to top mRNA from alignment at H-paniculata_contig24666:254..1513+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig24666.6686.1 ID=mRNA_H-paniculata_contig24666.6686.1|Name=mRNA_H-paniculata_contig24666.6686.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1260bp|location=Sequence derived from alignment at H-paniculata_contig24666:254..1513+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig24666:254..1513+ >mRNA_H-paniculata_contig24666.6686.1 ID=mRNA_H-paniculata_contig24666.6686.1|Name=mRNA_H-paniculata_contig24666.6686.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1056bp|location=Sequence derived from alignment at H-paniculata_contig24666:254..1513+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |