mRNA_H-paniculata_contig24665.6685.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24665.6685.1
Unique NamemRNA_H-paniculata_contig24665.6685.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig24665.6685.1 vs. uniprot
Match: A0A6H5JPZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPZ8_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 1.530e-31
Identity = 57/64 (89.06%), Postives = 60/64 (93.75%), Query Frame = 1 
Query:    1 IVEKQGIVRSSTLLAPTMLLTGHQAAIYSLKFDPSGLALASAGADRAIFLWDTRGECRNYNVLR 192
            IVEKQ I RSSTLLAPTMLLTGHQAA+Y+LKFDP+GL LASAGADRAIFLWDTRGEC NYNVLR
Sbjct:   36 IVEKQNIARSSTLLAPTMLLTGHQAAVYTLKFDPTGLQLASAGADRAIFLWDTRGECANYNVLR 99
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BLAST of mRNA_H-paniculata_contig24665.6685.1 vs. uniprot
Match: D8LBD6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBD6_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 1.680e-31
Identity = 96/106 (90.57%), Postives = 100/106 (94.34%), Query Frame = 1 
Query:    1 IVEKQGIVRSSTLLAPTMLLTGHQAAIYSLKFDPSGLALASAGADRAIFLWDTRGECRNYNVLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAHVGKRKKTFK 318
            IVEKQ I RSSTLLAPTMLLTGHQAA+Y+LKFDP+GL LASAGADRAIFLWDTRGEC NYNVL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA+ GKRKKTFK
Sbjct:   36 IVEKQNIARSSTLLAPTMLLTGHQAAVYTLKFDPTGLQLASAGADRAIFLWDTRGECANYNVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANAGKRKKTFK 141
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BLAST of mRNA_H-paniculata_contig24665.6685.1 vs. uniprot
Match: A0A2P4WZQ6_9STRA (Uncharacterized protein n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WZQ6_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 3.680e-17
Identity = 40/56 (71.43%), Postives = 45/56 (80.36%), Query Frame = 1 
Query:   25 RSSTLLAPTMLLTGHQAAIYSLKFDPSGLALASAGADRAIFLWDTRGECRNYNVLR 192
            R+S L+APTMLL+GH AA+YSLKF PSG  LAS+  DR I LWD  GECRNYNVLR
Sbjct:  195 RTSGLMAPTMLLSGHSAAVYSLKFSPSGQHLASSSFDRTILLWDVYGECRNYNVLR 250
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BLAST of mRNA_H-paniculata_contig24665.6685.1 vs. uniprot
Match: A0A6A7GAE8_9CRUS (U5 small nuclear ribonucleoprotein 40 kDa protein-like (Fragment) n=2 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7GAE8_9CRUS)

HSP 1 Score: 84.0 bits (206), Expect = 6.640e-17
Identity = 39/62 (62.90%), Postives = 48/62 (77.42%), Query Frame = 1 
Query:    7 EKQGIVRSSTLLAPTMLLTGHQAAIYSLKFDPSGLALASAGADRAIFLWDTRGECRNYNVLR 192
            EK G++R+STL APTMLLTGHQA IY+ KF PSG  LASAG D+ IFLW+  G+CRN  + +
Sbjct:   31 EKTGVMRTSTLHAPTMLLTGHQAQIYTTKFGPSGRLLASAGHDKNIFLWEVYGKCRNLGLFQ 92
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BLAST of mRNA_H-paniculata_contig24665.6685.1 vs. uniprot
Match: A0A7S2XUZ9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUZ9_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 2.530e-16
Identity = 37/56 (66.07%), Postives = 44/56 (78.57%), Query Frame = 1 
Query:   25 RSSTLLAPTMLLTGHQAAIYSLKFDPSGLALASAGADRAIFLWDTRGECRNYNVLR 192
            R+S L++PTM+LTGHQAA+YSL+FDPSG  LAS   D+ I LW   GEC NYNVLR
Sbjct:   42 RTSNLMSPTMMLTGHQAAVYSLQFDPSGQNLASGSFDKTIMLWSVYGECTNYNVLR 97
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BLAST of mRNA_H-paniculata_contig24665.6685.1 vs. uniprot
Match: A0A5D6XQN3_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XQN3_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 2.920e-16
Identity = 39/55 (70.91%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:   25 RSSTLLAPTMLLTGHQAAIYSLKFDPSGLALASAGADRAIFLWDTRGECRNYNVL 189
            R+S L APT+LLTGH AA+YSLKFD SG   ASA  DR+I LWD  GECRNYNVL
Sbjct:   60 RTSALAAPTLLLTGHSAAVYSLKFDASGQHAASASFDRSILLWDVYGECRNYNVL 114
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BLAST of mRNA_H-paniculata_contig24665.6685.1 vs. uniprot
Match: K3X9U2_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X9U2_GLOUD)

HSP 1 Score: 82.0 bits (201), Expect = 3.910e-16
Identity = 38/54 (70.37%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:   25 RSSTLLAPTMLLTGHQAAIYSLKFDPSGLALASAGADRAIFLWDTRGECRNYNV 186
            R+S L APTMLLTGH AA+YSLKFDPSG   AS+  DR+I LWD  GECRNYN+
Sbjct:   55 RTSGLAAPTMLLTGHSAAVYSLKFDPSGQHAASSSFDRSILLWDVYGECRNYNM 108
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BLAST of mRNA_H-paniculata_contig24665.6685.1 vs. uniprot
Match: A0A507C0F7_9FUNG (Uncharacterized protein n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507C0F7_9FUNG)

HSP 1 Score: 81.6 bits (200), Expect = 4.780e-16
Identity = 38/63 (60.32%), Postives = 45/63 (71.43%), Query Frame = 1 
Query:    4 VEKQGIVRSSTLLAPTMLLTGHQAAIYSLKFDPSGLALASAGADRAIFLWDTRGECRNYNVLR 192
            V +Q I R+S L+AP M LTGHQ  I+S KF P G  +AS   DR IFLWDT GEC+NYNVL+
Sbjct:   30 VSEQKIARTSDLMAPIMQLTGHQGEIFSCKFSPDGQHIASGSFDRDIFLWDTYGECKNYNVLK 92
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BLAST of mRNA_H-paniculata_contig24665.6685.1 vs. uniprot
Match: M4BWC5_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BWC5_HYAAE)

HSP 1 Score: 81.6 bits (200), Expect = 5.330e-16
Identity = 38/54 (70.37%), Postives = 44/54 (81.48%), Query Frame = 1 
Query:   25 RSSTLLAPTMLLTGHQAAIYSLKFDPSGLALASAGADRAIFLWDTRGECRNYNV 186
            R+S LLAPTMLL+GH AA+YSLKF PSG  LAS+  DR+I LW+  GECRNYNV
Sbjct:   53 RTSKLLAPTMLLSGHSAAVYSLKFSPSGQHLASSSFDRSILLWNVYGECRNYNV 106
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BLAST of mRNA_H-paniculata_contig24665.6685.1 vs. uniprot
Match: A0A484EFI7_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EFI7_BRELC)

HSP 1 Score: 79.3 bits (194), Expect = 3.610e-15
Identity = 36/54 (66.67%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:   25 RSSTLLAPTMLLTGHQAAIYSLKFDPSGLALASAGADRAIFLWDTRGECRNYNV 186
            R+S L+APTMLL+GH AA+YSLKF PSG  +AS   DR+I LWD  GECRN+NV
Sbjct:   49 RTSGLMAPTMLLSGHNAAVYSLKFSPSGQHVASCSFDRSILLWDVYGECRNFNV 102
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24665.6685.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JPZ8_9PHAE1.530e-3189.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LBD6_ECTSI1.680e-3190.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A2P4WZQ6_9STRA3.680e-1771.43Uncharacterized protein n=2 Tax=Phytophthora palmi... [more]
A0A6A7GAE8_9CRUS6.640e-1762.90U5 small nuclear ribonucleoprotein 40 kDa protein-... [more]
A0A7S2XUZ9_9STRA2.530e-1666.07Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A5D6XQN3_9STRA2.920e-1670.91Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
K3X9U2_GLOUD3.910e-1670.37Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A507C0F7_9FUNG4.780e-1660.32Uncharacterized protein n=1 Tax=Synchytrium microb... [more]
M4BWC5_HYAAE5.330e-1670.37Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A484EFI7_BRELC3.610e-1566.67Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24665contigH-paniculata_contig24665:174..1146 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score121.3
Seed ortholog evalue2.8e-25
Seed eggNOG ortholog2880.D8LBD6
Preferred nameSNRNP40
KEGG rclassRC00004,RC00740
KEGG koko:K01759,ko:K12857
KEGG ReactionR02530
KEGG Pathwayko00620,ko03040,map00620,map03040
KEGG ModuleM00354,M00355
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000122,GO:0000375,GO:0000377,GO:0000398,GO:0000429,GO:0000430,GO:0000433,GO:0000988,GO:0000989,GO:0001076,GO:0001191,GO:0001196,GO:0001198,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005682,GO:0005684,GO:0005732,GO:0005737,GO:0005829,GO:0006139,GO:0006323,GO:0006325,GO:0006333,GO:0006338,GO:0006355,GO:0006357,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006996,GO:0007154,GO:0007530,GO:0007531,GO:0007532,GO:0007584,GO:0008150,GO:0008152,GO:0008289,GO:0008380,GO:0009605,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010565,GO:0010570,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016584,GO:0016604,GO:0016607,GO:0017053,GO:0019216,GO:0019217,GO:0019219,GO:0019222,GO:0019899,GO:0022414,GO:0022607,GO:0030154,GO:0030532,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031497,GO:0031667,GO:0031668,GO:0031669,GO:0031670,GO:0031974,GO:0031981,GO:0032502,GO:0032879,GO:0032991,GO:0034641,GO:0034728,GO:0035091,GO:0035950,GO:0035952,GO:0035953,GO:0035955,GO:0036033,GO:0040008,GO:0042221,GO:0042304,GO:0042393,GO:0042826,GO:0043044,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043486,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044877,GO:0045013,GO:0045014,GO:0045165,GO:0045292,GO:0045892,GO:0045893,GO:0045894,GO:0045934,GO:0045935,GO:0045944,GO:0045990,GO:0046015,GO:0046483,GO:0046890,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051051,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051716,GO:0060255,GO:0061984,GO:0061985,GO:0061986,GO:0061987,GO:0062012,GO:0065007,GO:0070013,GO:0070784,GO:0070887,GO:0071007,GO:0071011,GO:0071013,GO:0071014,GO:0071103,GO:0071496,GO:0071704,GO:0071824,GO:0071840,GO:0072364,GO:0080025,GO:0080090,GO:0080134,GO:0080135,GO:0090087,GO:0090088,GO:0090089,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:0140110,GO:1900428,GO:1901360,GO:1901363,GO:1901981,GO:1902494,GO:1902679,GO:1902680,GO:1902936,GO:1903506,GO:1903507,GO:1903508,GO:1990904,GO:2000112,GO:2000113,GO:2000217,GO:2000531,GO:2000877,GO:2000879,GO:2001020,GO:2001141
EggNOG free text desc.RNA splicing
EggNOG OGsKOG0265@1,KOG0265@2759
Ec32 ortholog descriptionWD40 repeat
Ec32 orthologEc-27_004330.1
EC4.4.1.5
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03041
Exons2
Model size333
Cds size333
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929717.668962-CDS-H-paniculata_contig24665:173..3021622929717.668962-CDS-H-paniculata_contig24665:173..302Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24665 174..302 -
1691480980.8249023-CDS-H-paniculata_contig24665:173..3021691480980.8249023-CDS-H-paniculata_contig24665:173..302Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24665 174..302 -
1622929717.6879146-CDS-H-paniculata_contig24665:942..11461622929717.6879146-CDS-H-paniculata_contig24665:942..1146Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24665 943..1146 -
1691480980.839394-CDS-H-paniculata_contig24665:942..11461691480980.839394-CDS-H-paniculata_contig24665:942..1146Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24665 943..1146 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24665.6685.1prot_H-paniculata_contig24665.6685.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24665 174..1146 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24665.6685.1

>prot_H-paniculata_contig24665.6685.1 ID=prot_H-paniculata_contig24665.6685.1|Name=mRNA_H-paniculata_contig24665.6685.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=111bp
IVEKQGIVRSSTLLAPTMLLTGHQAAIYSLKFDPSGLALASAGADRAIFL
WDTRGECRNYNVLRGHKNAILELHWSPNNPTIVTASADKTLGYWDAHVGK
RKKTFKVREN*
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mRNA from alignment at H-paniculata_contig24665:174..1146-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24665.6685.1 ID=mRNA_H-paniculata_contig24665.6685.1|Name=mRNA_H-paniculata_contig24665.6685.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=973bp|location=Sequence derived from alignment at H-paniculata_contig24665:174..1146- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATAGTGGAGAAGCAGGGAATAGTGCGCTCCTCAACCCTCCTCGCCCCAAC
CATGCTGTTGACCGGCCACCAAGCAGCGATATACAGTCTCAAATTTGACC
CTTCAGGATTGGCACTTGCTAGTGCTGGCGCGGACAGAGCAATCTTCCTG
TGGGACACGAGGGGAGAGTGTAGGAACTATAACGTTCTTCGAGGTCATAA
AAACGTGAGTACAAAACTGTTTGGTCGTGGCCCCCGGTCTTGGGAGGATC
CCTACTACGACTGTAACCCCTCAACGTTACAAAATACATGAGAAAACACT
CCATTTTTCCCGTGATCATAGTGATAGGGGTTCGCTGCTGTTCAGATACC
CAGCCTCGTACAGACTGTACGTACAGCACAGACATGGAGGCTGCATGGTT
TCAAATGGTTGTGCGCACAATGATGGCAACGATCATTTTCTGTTCCGAAA
TAGTCCCCCCACCCGAAAGCTGTATTTTACTTCATGTTGACTGGCCATAC
AGACTAGTGTGTACTGCTGTCTATATGGTCTTGTTCAGTGGAGCCGCGAC
CCTTGGGTATCCTCATTCGTTGAGTATAGCACGGAAGGTGTTTACGTACT
GAGCAGGCTGTCTTCAATTCTACTGCCCGCAGGACGATTGATAGCACAAA
TTGTCGCTTTGGCTAGTAATCGCAAGTTTATGTAGAGACACATACTACAA
TATAGTCCAAATATCAATATAGGTCAGAGGTTGGGCGAACAAACGATTGG
CTCCGATTGACATTCACAAAATCCGCACAACATGCGTCTACAAAATAGTC
CGAAAAAGTGTTCCAATAGCGTTACGGTTACGCACTGCCAACAGGCCATA
CTGGAGTTGCACTGGTCACCGAACAACCCCACCATCGTCACAGCGTCGGC
AGACAAGACGCTGGGATACTGGGATGCACACGTGGGTAAACGCAAGAAGA
CTTTCAAGGTGAGGGAAAACTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig24665:174..1146-

>mRNA_H-paniculata_contig24665.6685.1 ID=mRNA_H-paniculata_contig24665.6685.1|Name=mRNA_H-paniculata_contig24665.6685.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at H-paniculata_contig24665:174..1146- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATAGTGGAGAAGCAGGGAATAGTGCGCTCCTCAACCCTCCTCGCCCCAAC
CATGCTGTTGACCGGCCACCAAGCAGCGATATACAGTCTCAAATTTGACC
CTTCAGGATTGGCACTTGCTAGTGCTGGCGCGGACAGAGCAATCTTCCTG
TGGGACACGAGGGGAGAGTGTAGGAACTATAACGTTCTTCGAGGTCATAA
AAACATAGTGGAGAAGCAGGGAATAGTGCGCTCCTCAACCCTCCTCGCCC
CAACCATGCTGTTGACCGGCCACCAAGCAGCGATATACAGTCTCAAATTT
GACCCTTCAGGATTGGCACTTGCTAGTGCTGGCGCGGACAGAGCAATCTT
CCTGTGGGACACGAGGGGAGAGTGTAGGAACTATAACGTTCTTCGAGGTC
ATAAAAACGCCATACTGGAGTTGCACTGGTCACCGAACAACCCCACCATC
GTCACAGCGTCGGCAGACAAGACGCTGGGATACTGGGATGCACACGTGGG
TAAACGCAAGAAGACTTTCAAGGTGAGGGAAAACTAGGCCATACTGGAGT
TGCACTGGTCACCGAACAACCCCACCATCGTCACAGCGTCGGCAGACAAG
ACGCTGGGATACTGGGATGCACACGTGGGTAAACGCAAGAAGACTTTCAA
GGTGAGGGAAAACTAG
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