mRNA_H-paniculata_contig11023.668.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11023.668.1
Unique NamemRNA_H-paniculata_contig11023.668.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig11023.668.1 vs. uniprot
Match: A0A6H5K1B4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1B4_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 4.430e-18
Identity = 58/109 (53.21%), Postives = 66/109 (60.55%), Query Frame = 1 
Query:  568 GGAGQRAKEPQREKRTGSGVLPDGTFFVEM-----------------GKAFFTPREKDGRLPMEDLIAATQACLQALTDDVVVVNHGGDTEPSRYRALVRPFSVRLVPG 843
            GGAG      +R  R G  V+  G FF+E+                 GKA  TP  +DGRLPME LIA TQ CLQALTDDV VVNHGG +E  +YRALVRPF+VRL PG
Sbjct:  505 GGAGPEHSG-RRGLRRGRSVVTGGRFFLEVRLAVFAESGAMVIGGWVGKALLTPG-RDGRLPMETLIATTQGCLQALTDDVSVVNHGGTSEAGQYRALVRPFTVRLSPG 611
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BLAST of mRNA_H-paniculata_contig11023.668.1 vs. uniprot
Match: D7FHF4_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHF4_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 1.140e-13
Identity = 40/53 (75.47%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:  685 KDGRLPMEDLIAATQACLQALTDDVVVVNHGGDTEPSRYRALVRPFSVRLVPG 843
            +DGRL ME LIA TQ CLQALTDDV VVNHGG +E  +YRALVRPF+VRL PG
Sbjct:  858 RDGRLRMETLIATTQGCLQALTDDVSVVNHGGSSEAGQYRALVRPFTVRLSPG 910
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11023.668.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K1B4_9PHAE4.430e-1853.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHF4_ECTSI1.140e-1375.47Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11023contigH-paniculata_contig11023:1750..3555 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size993
Cds size993
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11023.668.1prot_H-paniculata_contig11023.668.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11023 1750..3555 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928809.845593-CDS-H-paniculata_contig11023:1749..20011622928809.845593-CDS-H-paniculata_contig11023:1749..2001Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11023 1750..2001 -
1691480628.7026658-CDS-H-paniculata_contig11023:1749..20011691480628.7026658-CDS-H-paniculata_contig11023:1749..2001Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11023 1750..2001 -
1622928809.908273-CDS-H-paniculata_contig11023:2751..29901622928809.908273-CDS-H-paniculata_contig11023:2751..2990Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11023 2752..2990 -
1691480628.7135782-CDS-H-paniculata_contig11023:2751..29901691480628.7135782-CDS-H-paniculata_contig11023:2751..2990Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11023 2752..2990 -
1622928809.924996-CDS-H-paniculata_contig11023:3053..35551622928809.924996-CDS-H-paniculata_contig11023:3053..3555Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11023 3054..3555 -
1691480628.7273762-CDS-H-paniculata_contig11023:3053..35551691480628.7273762-CDS-H-paniculata_contig11023:3053..3555Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11023 3054..3555 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11023.668.1

>prot_H-paniculata_contig11023.668.1 ID=prot_H-paniculata_contig11023.668.1|Name=mRNA_H-paniculata_contig11023.668.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=331bp
GQGITTFEAEESGVLRALLRALFSGRHRGGLEEHYCQNGGGGGSGGSSAD
QRNVGADERNTSGCYKKGETPAATVRTELMVQSEQAAGSTRVVVASGTEE
SEGTQVEGVEQARPANAGQSDPKARKSNTESISHVPFASEIHAAAEATNS
CATSSGSSSSNEKQVSRATTKITSTMSSGPQAVPMAENPGGAGQRAKEPQ
REKRTGSGVLPDGTFFVEMGKAFFTPREKDGRLPMEDLIAATQACLQALT
DDVVVVNHGGDTEPSRYRALVRPFSVRLVPGSAAAKKPSRSSSSSSKRRK
QSCAAAALGNEAMAAAESKEWSGVNRAANGG
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mRNA from alignment at H-paniculata_contig11023:1750..3555-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11023.668.1 ID=mRNA_H-paniculata_contig11023.668.1|Name=mRNA_H-paniculata_contig11023.668.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1806bp|location=Sequence derived from alignment at H-paniculata_contig11023:1750..3555- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGCAAGGGATTACAACGTTCGAGGCGGAGGAGAGCGGCGTGCTGCGCGC
GTTGCTTCGCGCTCTATTCTCTGGACGGCATCGTGGCGGACTAGAAGAAC
ATTATTGTCAAAATGGTGGAGGCGGAGGCAGTGGCGGCAGTAGCGCGGAC
CAACGAAATGTGGGCGCTGACGAAAGAAATACAAGCGGCTGTTACAAGAA
GGGAGAGACGCCGGCGGCGACGGTGAGGACAGAGCTGATGGTCCAGTCTG
AACAAGCAGCGGGGTCTACTAGAGTGGTCGTGGCGTCCGGGACAGAGGAG
TCAGAGGGGACACAAGTTGAAGGTGTCGAGCAGGCCAGGCCCGCCAATGC
GGGGCAATCGGACCCGAAAGCCAGAAAATCCAATACGGAATCCATCTCAC
ATGTCCCATTCGCCTCCGAAATCCACGCTGCCGCTGAGGCCACAAATTCC
TGTGCGACATCTTCTGGTTCGTCATCATCCAATGAAAAGCAGGTTTCCAG
AGGTGGTGATGACGCAATGGATGTTGTGACGTACGGTACGGCAACACCAA
TGACCACAGCATCAGCCACGACCAAGATAACAAGTACGATGTCGTCGGGT
CCGCAGGCGGTGCCAATGGCGGAGAACCCGGGGGGGGCGGGGCAGCGAGC
CAAAGAACCGCAGCGGGAAAAGCGGACCGGATCAGGGGTTCTGCCTGACG
GAACGTTTTTCGTAGAGATGGGGAAGGCGTTTTTCACCCCACGGGAAAAG
GATGGCCGGCTTCCGATGGAAGATTTGATCGCGGCTACACAAGCCTGTCT
TCAGGTGATGATAACGGTGATACACAATGGTATATTGATGGTAGGGATCT
AAGTGTTCCGGGGTTTCGGGTAGGTCTCGTTTTGCGGTACGTAGATTTAC
GATTGTCGCGGTCATGATCCAATGTGTGTATACGCGTGGAGTATGATATA
TTGGTGGGGGCGGTCTAGTTAATTATGGTGGTGAGTACGTGAGATGTAGA
ATTGACGGAATTTTGACCCAGGAAGTGTCACCGTTCACGCGAGTACAATG
TTTTTTAGCGGTGGTGTTCTTGTGATGGAGCTTTTTTTTTTTCAACTCTT
TCACGATAACGCTTTAACACCTGCCGACTCAGGTGTGCGAAACCTGGGTA
ACCTAGAGGAGGGGTTGTTGCATCCAACCCCAGCCTCAAGGCAACGAACA
AGATGGTGATGATGGTGGTGATCCAAAAGTGATTTTAAACAAGTGATGAT
ATTGTGTTTCGTGCGTTCAAGCTGCTAGGTTGCCACCACGATGAGTCTTC
TGTAAGTAATACGCCTTCCCAAAACGAAAGACAGAGTATACAATTTTTCA
GTCTTTTTCGTTTCTATTGATAACGTTAATAATACTAATAATAACGAGGA
TGAGGATAACAAGTACGTGGAACACAAAGCCTGGGATTCCAAATTCCGGT
GGTGATTGTGTCCATGATGGCAGTCAAGGAAGATGAAAGTTACCTGGCCA
CCGACCCTCCCACTCCTTTTTCGCTGTCTCTGTTCTCCTTGCTGTCCTCT
TCAGGCTCTCACCGACGATGTGGTGGTTGTCAACCATGGCGGAGACACAG
AACCATCGCGCTACCGTGCCCTCGTGAGACCGTTTAGCGTCCGCCTTGTA
CCGGGCTCCGCCGCCGCGAAAAAGCCTTCCAGGTCTAGCTCGTCCTCTTC
TAAGCGTCGTAAGCAATCCTGTGCTGCTGCCGCTCTCGGTAACGAAGCGA
TGGCTGCAGCGGAGAGTAAAGAGTGGTCGGGTGTTAATCGTGCCGCTAAC
GGCGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig11023:1750..3555-

>mRNA_H-paniculata_contig11023.668.1 ID=mRNA_H-paniculata_contig11023.668.1|Name=mRNA_H-paniculata_contig11023.668.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1986bp|location=Sequence derived from alignment at H-paniculata_contig11023:1750..3555- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGCAAGGGATTACAACGTTCGAGGCGGAGGAGAGCGGCGTGCTGCGCGC
GTTGCTTCGCGCTCTATTCTCTGGACGGCATCGTGGCGGACTAGAAGAAC
ATTATTGTCAAAATGGTGGAGGCGGAGGCAGTGGCGGCAGTAGCGCGGAC
CAACGAAATGTGGGCGCTGACGAAAGAAATACAAGCGGCTGTTACAAGAA
GGGAGAGACGCCGGCGGCGACGGTGAGGACAGAGCTGATGGTCCAGTCTG
AACAAGCAGCGGGGTCTACTAGAGTGGTCGTGGCGTCCGGGACAGAGGAG
TCAGAGGGGACACAAGTTGAAGGTGTCGAGCAGGCCAGGCCCGCCAATGC
GGGGCAATCGGACCCGAAAGCCAGAAAATCCAATACGGAATCCATCTCAC
ATGTCCCATTCGCCTCCGAAATCCACGCTGCCGCTGAGGCCACAAATTCC
TGTGCGACATCTTCTGGTTCGTCATCATCCAATGAAAAGCAGGTTTCCAG
AGGGGCAAGGGATTACAACGTTCGAGGCGGAGGAGAGCGGCGTGCTGCGC
GCGTTGCTTCGCGCTCTATTCTCTGGACGGCATCGTGGCGGACTAGAAGA
ACATTATTGTCAAAATGGTGGAGGCGGAGGCAGTGGCGGCAGTAGCGCGG
ACCAACGAAATGTGGGCGCTGACGAAAGAAATACAAGCGGCTGTTACAAG
AAGGGAGAGACGCCGGCGGCGACGGTGAGGACAGAGCTGATGGTCCAGTC
TGAACAAGCAGCGGGGTCTACTAGAGTGGTCGTGGCGTCCGGGACAGAGG
AGTCAGAGGGGACACAAGTTGAAGGTGTCGAGCAGGCCAGGCCCGCCAAT
GCGGGGCAATCGGACCCGAAAGCCAGAAAATCCAATACGGAATCCATCTC
ACATGTCCCATTCGCCTCCGAAATCCACGCTGCCGCTGAGGCCACAAATT
CCTGTGCGACATCTTCTGGTTCGTCATCATCCAATGAAAAGCAGGTTTCC
AGAGCCACGACCAAGATAACAAGTACGATGTCGTCGGGTCCGCAGGCGGT
GCCAATGGCGGAGAACCCGGGGGGGGCGGGGCAGCGAGCCAAAGAACCGC
AGCGGGAAAAGCGGACCGGATCAGGGGTTCTGCCTGACGGAACGTTTTTC
GTAGAGATGGGGAAGGCGTTTTTCACCCCACGGGAAAAGGATGGCCGGCT
TCCGATGGAAGATTTGATCGCGGCTACACAAGCCTGTCTTCAGCCACGAC
CAAGATAACAAGTACGATGTCGTCGGGTCCGCAGGCGGTGCCAATGGCGG
AGAACCCGGGGGGGGCGGGGCAGCGAGCCAAAGAACCGCAGCGGGAAAAG
CGGACCGGATCAGGGGTTCTGCCTGACGGAACGTTTTTCGTAGAGATGGG
GAAGGCGTTTTTCACCCCACGGGAAAAGGATGGCCGGCTTCCGATGGAAG
ATTTGATCGCGGCTACACAAGCCTGTCTTCAGGCTCTCACCGACGATGTG
GTGGTTGTCAACCATGGCGGAGACACAGAACCATCGCGCTACCGTGCCCT
CGTGAGACCGTTTAGCGTCCGCCTTGTACCGGGCTCCGCCGCCGCGAAAA
AGCCTTCCAGGTCTAGCTCGTCCTCTTCTAAGCGTCGTAAGCAATCCTGT
GCTGCTGCCGCTCTCGGTAACGAAGCGATGGCTGCAGCGGAGAGTAAAGA
GTGGTCGGGTGTTAATCGTGCCGCTAACGGCGGTGCTCTCACCGACGATG
TGGTGGTTGTCAACCATGGCGGAGACACAGAACCATCGCGCTACCGTGCC
CTCGTGAGACCGTTTAGCGTCCGCCTTGTACCGGGCTCCGCCGCCGCGAA
AAAGCCTTCCAGGTCTAGCTCGTCCTCTTCTAAGCGTCGTAAGCAATCCT
GTGCTGCTGCCGCTCTCGGTAACGAAGCGATGGCTGCAGCGGAGAGTAAA
GAGTGGTCGGGTGTTAATCGTGCCGCTAACGGCGGT
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