mRNA_H-paniculata_contig24599.6672.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24599.6672.1
Unique NamemRNA_H-paniculata_contig24599.6672.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig24599.6672.1 vs. uniprot
Match: A0A4Y2AAN3_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2AAN3_ARAVE)

HSP 1 Score: 99.8 bits (247), Expect = 1.030e-24
Identity = 51/106 (48.11%), Postives = 66/106 (62.26%), Query Frame = 1
Query:    1 IMITANMGSPYWAEAVRSAGYCQDRTPTRPHHGGTPYEKWHGETPKLDNLRVFSCTAYDMFQPQQRRKFDDKAWVEVFLGYDEDSPSYRIHSPDNKSVQLSRNVKF 318
            ++  AN+   +WAEAV +A Y Q+R PT+P+   TPYE W    P L ++RVF C AY   Q Q+R K DDKA   +FLGYD  S  YRI+  D K + +SR VKF
Sbjct:    5 LLSEANLPQRFWAEAVMTATYLQNRLPTKPNKT-TPYELWTNRKPDLSHIRVFGCKAYAYIQKQKRGKLDDKAVEGIFLGYDYRSKGYRIYLGDKK-IMISRTVKF 108          
BLAST of mRNA_H-paniculata_contig24599.6672.1 vs. uniprot
Match: A0A6H5GEM5_9HEMI (Integrase catalytic domain-containing protein n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GEM5_9HEMI)

HSP 1 Score: 99.4 bits (246), Expect = 5.430e-22
Identity = 46/110 (41.82%), Postives = 68/110 (61.82%), Query Frame = 1
Query:    1 IMITANMGSPYWAEAVRSAGYCQDRTPTRPHHGGTPYEKWHGETPKLDNLRVFSCTAYDMFQPQQRRKFDDKAWVEVFLGYDEDSPSYRIHSPDNKSVQLSRNVKFDEED 330
            ++  A++   YWAEAV +A Y  +R+PT+  H  TP+E W G  P L ++R+F C A      Q+R+K+D K+   +F+GY ED+  YR+  P  K +Q SR+V F EED
Sbjct:  156 MLADASLPKSYWAEAVNTAVYLNNRSPTKAVHDKTPFEAWTGNKPDLSHIRIFGCKAMAQVPRQKRKKWDPKSEEYIFVGYGEDTKGYRLLHPVTKQIQFSRDVIFLEED 265          
BLAST of mRNA_H-paniculata_contig24599.6672.1 vs. uniprot
Match: A0A8J5FC91_ZINOF (Integrase catalytic domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5FC91_ZINOF)

HSP 1 Score: 97.4 bits (241), Expect = 2.580e-21
Identity = 42/98 (42.86%), Postives = 61/98 (62.24%), Query Frame = 1
Query:   31 YWAEAVRSAGYCQDRTPTRPHHGGTPYEKWHGETPKLDNLRVFSCTAYDMFQPQQRRKFDDKAWVEVFLGYDEDSPSYRIHSPDNKSVQLSRNVKFDE 324
            YWAEAV +A Y  +R+PT+  H  TPYE WH + P +D+ ++F   AY +   Q+R KFD K    +F+GY+ +S  YR+  P    + +SR+V FDE
Sbjct:  498 YWAEAVHTAAYIMNRSPTKAVHNMTPYEAWHKKKPVVDHFKIFGSLAYALLPSQRREKFDSKGQKLIFIGYNNESKGYRLLDPSTLKIIVSRDVIFDE 595          
BLAST of mRNA_H-paniculata_contig24599.6672.1 vs. uniprot
Match: A0A8J5GP83_ZINOF (Integrase catalytic domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5GP83_ZINOF)

HSP 1 Score: 97.1 bits (240), Expect = 3.630e-21
Identity = 42/98 (42.86%), Postives = 60/98 (61.22%), Query Frame = 1
Query:   31 YWAEAVRSAGYCQDRTPTRPHHGGTPYEKWHGETPKLDNLRVFSCTAYDMFQPQQRRKFDDKAWVEVFLGYDEDSPSYRIHSPDNKSVQLSRNVKFDE 324
            YWAEAV +A Y  +R+PT+  H  TPYE WH + P +D+ ++F   AY +   Q+R KFD K    +F+GY  +S  YR+  P    + +SR+V FDE
Sbjct:  636 YWAEAVHTAAYIMNRSPTKAVHNMTPYEAWHKKKPVVDHFKIFGSLAYALLPSQRREKFDSKGQKLIFIGYSNESKGYRLLDPSTLKIIVSRDVIFDE 733          
BLAST of mRNA_H-paniculata_contig24599.6672.1 vs. uniprot
Match: A0A7C8ZAD7_OPUST (Uncharacterized protein n=2 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C8ZAD7_OPUST)

HSP 1 Score: 94.0 bits (232), Expect = 4.890e-21
Identity = 43/98 (43.88%), Postives = 64/98 (65.31%), Query Frame = 1
Query:   31 YWAEAVRSAGYCQDRTPTRPHHGGTPYEKWHGETPKLDNLRVFSCTAYDMFQPQQRRKFDDKAWVEVFLGYDEDSPSYRIHSPDNKSVQLSRNVKFDE 324
            +WAEAV +A Y  + +PT+  +G TPYE W G  PK+ +LRVF C AY +   Q R K D+K+   +F+GY   S +Y++++P +  V +SR+V FDE
Sbjct:   15 FWAEAVATAVYLLNISPTKAVYGRTPYEAWTGNKPKVSHLRVFGCIAYALVHSQLRHKLDEKSEKCIFVGYSTQSKAYKLYNPISGKVLVSRDVVFDE 112          
BLAST of mRNA_H-paniculata_contig24599.6672.1 vs. uniprot
Match: A0A8J5F3N7_ZINOF (Integrase catalytic domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5F3N7_ZINOF)

HSP 1 Score: 96.7 bits (239), Expect = 5.050e-21
Identity = 42/98 (42.86%), Postives = 60/98 (61.22%), Query Frame = 1
Query:   31 YWAEAVRSAGYCQDRTPTRPHHGGTPYEKWHGETPKLDNLRVFSCTAYDMFQPQQRRKFDDKAWVEVFLGYDEDSPSYRIHSPDNKSVQLSRNVKFDE 324
            YWAEAV +A Y  +R+PT+  H  TPYE WH + P +D+ ++F   AY +   Q+R KFD K    +F+GY  +S  YR+  P    + +SR+V FDE
Sbjct:  606 YWAEAVHTAAYIMNRSPTKAVHNMTPYEAWHKKKPVVDHFKIFGSLAYALLPSQRREKFDSKGQKLIFIGYSNESKGYRLLDPSTFKIIVSRDVIFDE 703          
BLAST of mRNA_H-paniculata_contig24599.6672.1 vs. uniprot
Match: A0A6H5GGZ1_9HEMI (Integrase catalytic domain-containing protein (Fragment) n=2 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GGZ1_9HEMI)

HSP 1 Score: 95.9 bits (237), Expect = 9.410e-21
Identity = 46/106 (43.40%), Postives = 65/106 (61.32%), Query Frame = 1
Query:    1 IMITANMGSPYWAEAVRSAGYCQDRTPTRPHHGGTPYEKWHGETPKLDNLRVFSCTAYDMFQPQQRRKFDDKAWVEVFLGYDEDSPSYRIHSPDNKSVQLSRNVKF 318
            ++  A +G  +WAEA+ +A Y  +R+P+R     TPYE WHGE P L +LRVF C+A+     Q+R+K D K+   +F+GY ED   YR+  P  K V  SR+V F
Sbjct:  572 MLADAKLGKEFWAEAIVTACYLINRSPSRALGERTPYEVWHGEKPDLSHLRVFGCSAWAHIPKQRRKKLDPKSERLIFIGYPEDRRGYRLLDPVTKRVTNSRDVHF 677          
BLAST of mRNA_H-paniculata_contig24599.6672.1 vs. uniprot
Match: A0A4Y1QWW3_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1QWW3_PRUDU)

HSP 1 Score: 95.5 bits (236), Expect = 1.260e-20
Identity = 42/103 (40.78%), Postives = 66/103 (64.08%), Query Frame = 1
Query:   16 NMGSPYWAEAVRSAGYCQDRTPTRPHHGGTPYEKWHGETPKLDNLRVFSCTAYDMFQPQQRRKFDDKAWVEVFLGYDEDSPSYRIHSPDNKSVQLSRNVKFDE 324
            ++ + +WAEA+ +A +  +R+PT+     TP+E WH   PK+D  ++F CTAY     Q+R KFD+K    +F+GY + S +YR+  P  KS+ +SR+V FDE
Sbjct:  306 SLPNTFWAEAIHTAVFILNRSPTKAVKDKTPFEAWHRFKPKVDFFKIFGCTAYAHIPSQKREKFDEKGEKYIFVGYSDQSKAYRLIDPRTKSLVISRDVIFDE 408          
BLAST of mRNA_H-paniculata_contig24599.6672.1 vs. uniprot
Match: A0A8J6L9W6_TENMO (Uncharacterized protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6L9W6_TENMO)

HSP 1 Score: 95.5 bits (236), Expect = 1.280e-20
Identity = 41/106 (38.68%), Postives = 66/106 (62.26%), Query Frame = 1
Query:    1 IMITANMGSPYWAEAVRSAGYCQDRTPTRPHHGGTPYEKWHGETPKLDNLRVFSCTAYDMFQPQQRRKFDDKAWVEVFLGYDEDSPSYRIHSPDNKSVQLSRNVKF 318
            +M+ + +   +WAEAV +A Y ++R P++   G TPYE W G+ P + + R F C  + + +   R KFD +A   VFLGY E+S  YR+  P+ + V+++R+VKF
Sbjct:  470 LMLQSGLPPSFWAEAVNTANYIRNRCPSKSLGGRTPYEVWTGKKPNVSHFREFGCRVFRLDRQPNRGKFDSRAKEGVFLGYSEESKGYRVWMPNERKVEITRDVKF 575          
BLAST of mRNA_H-paniculata_contig24599.6672.1 vs. uniprot
Match: A0A4Y1R9H3_PRUDU (Transposable element protein (Fragment) n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1R9H3_PRUDU)

HSP 1 Score: 95.5 bits (236), Expect = 1.280e-20
Identity = 42/103 (40.78%), Postives = 66/103 (64.08%), Query Frame = 1
Query:   16 NMGSPYWAEAVRSAGYCQDRTPTRPHHGGTPYEKWHGETPKLDNLRVFSCTAYDMFQPQQRRKFDDKAWVEVFLGYDEDSPSYRIHSPDNKSVQLSRNVKFDE 324
            ++ + +WAEA+ +A +  +R+PT+     TP+E WH   PK+D  ++F CTAY     Q+R KFD+K    +F+GY + S +YR+  P  KS+ +SR+V FDE
Sbjct:  543 SLPNTFWAEAIHTAVFILNRSPTKAVKDKTPFEAWHRFKPKVDFFKIFGCTAYAHIPSQKREKFDEKGEKYIFVGYSDQSKAYRLIDPRTKSLVISRDVIFDE 645          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24599.6672.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4Y2AAN3_ARAVE1.030e-2448.11Retrovirus-related Pol polyprotein from transposon... [more]
A0A6H5GEM5_9HEMI5.430e-2241.82Integrase catalytic domain-containing protein n=1 ... [more]
A0A8J5FC91_ZINOF2.580e-2142.86Integrase catalytic domain-containing protein n=1 ... [more]
A0A8J5GP83_ZINOF3.630e-2142.86Integrase catalytic domain-containing protein n=1 ... [more]
A0A7C8ZAD7_OPUST4.890e-2143.88Uncharacterized protein n=2 Tax=Opuntia streptacan... [more]
A0A8J5F3N7_ZINOF5.050e-2142.86Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5GGZ1_9HEMI9.410e-2143.40Integrase catalytic domain-containing protein (Fra... [more]
A0A4Y1QWW3_PRUDU1.260e-2040.78Transposable element protein n=1 Tax=Prunus dulcis... [more]
A0A8J6L9W6_TENMO1.280e-2038.68Uncharacterized protein n=1 Tax=Tenebrio molitor T... [more]
A0A4Y1R9H3_PRUDU1.280e-2040.78Transposable element protein (Fragment) n=1 Tax=Pr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24599contigH-paniculata_contig24599:2909..3241 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score95.5
Seed ortholog evalue1.6e-17
Seed eggNOG ortholog7070.TC002224-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Encoded by
EggNOG OGs38DPC@33154,3BI7U@33208,3CTS1@33213,3SH01@50557,41WYJ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Exons1
Model size333
Cds size330
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929714.362196-UTR-H-paniculata_contig24599:2908..29111622929714.362196-UTR-H-paniculata_contig24599:2908..2911Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24599 2909..2911 +
1691480979.1403024-UTR-H-paniculata_contig24599:2908..29111691480979.1403024-UTR-H-paniculata_contig24599:2908..2911Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24599 2909..2911 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929714.3825681-CDS-H-paniculata_contig24599:2911..32411622929714.3825681-CDS-H-paniculata_contig24599:2911..3241Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24599 2912..3241 +
1691480979.152145-CDS-H-paniculata_contig24599:2911..32411691480979.152145-CDS-H-paniculata_contig24599:2911..3241Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24599 2912..3241 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24599.6672.1prot_H-paniculata_contig24599.6672.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24599 2912..3241 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24599.6672.1

>prot_H-paniculata_contig24599.6672.1 ID=prot_H-paniculata_contig24599.6672.1|Name=mRNA_H-paniculata_contig24599.6672.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=110bp
MITANMGSPYWAEAVRSAGYCQDRTPTRPHHGGTPYEKWHGETPKLDNLR
VFSCTAYDMFQPQQRRKFDDKAWVEVFLGYDEDSPSYRIHSPDNKSVQLS
RNVKFDEEDF
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mRNA from alignment at H-paniculata_contig24599:2909..3241+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24599.6672.1 ID=mRNA_H-paniculata_contig24599.6672.1|Name=mRNA_H-paniculata_contig24599.6672.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=333bp|location=Sequence derived from alignment at H-paniculata_contig24599:2909..3241+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCATGATCACCGCCAATATGGGTAGTCCATATTGGGCGGAAGCGGTGCG CTCAGCAGGGTACTGCCAAGATCGCACCCCGACGCGACCGCACCACGGAG GAACGCCATACGAAAAATGGCACGGCGAGACACCAAAGTTGGACAACCTT CGTGTCTTTAGCTGCACGGCGTATGATATGTTCCAGCCGCAGCAGAGACG CAAATTCGACGACAAAGCATGGGTGGAGGTGTTTCTGGGGTACGACGAAG ACAGCCCGAGTTATCGCATTCATAGCCCGGACAACAAGAGCGTCCAATTG AGCAGGAACGTAAAATTTGACGAAGAGGACTTC
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Coding sequence (CDS) from alignment at H-paniculata_contig24599:2909..3241+

>mRNA_H-paniculata_contig24599.6672.1 ID=mRNA_H-paniculata_contig24599.6672.1|Name=mRNA_H-paniculata_contig24599.6672.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at H-paniculata_contig24599:2909..3241+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATCACCGCCAATATGGGTAGTCCATATTGGGCGGAAGCGGTGCGCTC
AGCAGGGTACTGCCAAGATCGCACCCCGACGCGACCGCACCACGGAGGAA
CGCCATACGAAAAATGGCACGGCGAGACACCAAAGTTGGACAACCTTCGT
GTCTTTAGCTGCACGGCGTATGATATGTTCCAGCCGCAGCAGAGACGCAA
ATTCGACGACAAAGCATGGGTGGAGGTGTTTCTGGGGTACGACGAAGACA
GCCCGAGTTATCGCATTCATAGCCCGGACAACAAGAGCGTCCAATTGAGC
AGGAACGTAAAATTTGACGAAGAGGACTTCATGATCACCGCCAATATGGG
TAGTCCATATTGGGCGGAAGCGGTGCGCTCAGCAGGGTACTGCCAAGATC
GCACCCCGACGCGACCGCACCACGGAGGAACGCCATACGAAAAATGGCAC
GGCGAGACACCAAAGTTGGACAACCTTCGTGTCTTTAGCTGCACGGCGTA
TGATATGTTCCAGCCGCAGCAGAGACGCAAATTCGACGACAAAGCATGGG
TGGAGGTGTTTCTGGGGTACGACGAAGACAGCCCGAGTTATCGCATTCAT
AGCCCGGACAACAAGAGCGTCCAATTGAGCAGGAACGTAAAATTTGACGA
AGAGGACTTC
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