mRNA_H-paniculata_contig24513.6645.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24513.6645.1
Unique NamemRNA_H-paniculata_contig24513.6645.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig24513.6645.1 vs. uniprot
Match: A0A0J7K416_LASNI (Lectin receptor kinase n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K416_LASNI)

HSP 1 Score: 72.8 bits (177), Expect = 2.290e-13
Identity = 33/75 (44.00%), Postives = 46/75 (61.33%), Query Frame = 1
Query:    7 PVRFSDIKKLTHKTLWNEAVRVEFEDLENPKAWTYVDNVRKGSNVVSARWVFAWKIDEQGNVTKPKARLVARGFS 231
            PV + +  K      W EA+  E + +E    WT V N+ KG   +SA+W+F  K+DE+GNV + KARLVARG+S
Sbjct:  174 PVSYEEAIKGPEGEKWKEAINEELDAMEKNSTWTVVKNLPKGRRPISAKWIFKKKLDEEGNVVRYKARLVARGYS 248          
BLAST of mRNA_H-paniculata_contig24513.6645.1 vs. uniprot
Match: A0A0J7KM48_LASNI (Integrase catalytic domain-containing protein n=2 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KM48_LASNI)

HSP 1 Score: 72.8 bits (177), Expect = 3.110e-13
Identity = 33/75 (44.00%), Postives = 46/75 (61.33%), Query Frame = 1
Query:    7 PVRFSDIKKLTHKTLWNEAVRVEFEDLENPKAWTYVDNVRKGSNVVSARWVFAWKIDEQGNVTKPKARLVARGFS 231
            PV + +  K      W EA+  E + +E    WT V N+ KG   +SA+W+F  K+DE+GNV + KARLVARG+S
Sbjct:  549 PVSYEEAIKGPEGEKWKEAINEELDAMEKNSTWTVVKNLPKGRRPISAKWIFKKKLDEEGNVVRYKARLVARGYS 623          
BLAST of mRNA_H-paniculata_contig24513.6645.1 vs. uniprot
Match: A0A5C3EBA0_9BASI (Related to Retrotransposon protein n=1 Tax=Ustilago trichophora TaxID=86804 RepID=A0A5C3EBA0_9BASI)

HSP 1 Score: 64.3 bits (155), Expect = 3.040e-10
Identity = 32/77 (41.56%), Postives = 45/77 (58.44%), Query Frame = 1
Query:    1 EPPVRFSDIKKLTHKTLWNEAVRVEFEDLENPKAWTYVDNVRKGSNVVSARWVFAWKIDEQGNVTKPKARLVARGFS 231
            E P   +  +   +   W EA++VE + L+N   WT VD +      ++A+WVF  K D  GNV+K KARLVARGF+
Sbjct:  861 EDPQMLAQARASPNWPKWEEAIKVELDSLDNTGTWTIVD-LPAARKAITAKWVFKTKQDADGNVSKYKARLVARGFT 936          
BLAST of mRNA_H-paniculata_contig24513.6645.1 vs. uniprot
Match: A0A2S2NPY8_SCHGA (Copia protein (Fragment) n=1 Tax=Schizaphis graminum TaxID=13262 RepID=A0A2S2NPY8_SCHGA)

HSP 1 Score: 63.5 bits (153), Expect = 5.520e-10
Identity = 31/75 (41.33%), Postives = 44/75 (58.67%), Query Frame = 1
Query:    7 PVRFSDIKKLTHKTLWNEAVRVEFEDLENPKAWTYVDNVRKGSNVVSARWVFAWKIDEQGNVTKPKARLVARGFS 231
            P  + + +   +K  WN A++ E E L   K WT V   +   N++S +W+F  K D +G +TK KARLVARGFS
Sbjct:   63 PTTYDEAQSHPNKKEWNLAMKSEIESLYKNKTWTLVKKPQN-RNIISTKWIFKIKKDGEGQITKYKARLVARGFS 136          
BLAST of mRNA_H-paniculata_contig24513.6645.1 vs. uniprot
Match: A0A2G8SLM4_9APHY (Transcription factor n=1 Tax=Ganoderma sinense ZZ0214-1 TaxID=1077348 RepID=A0A2G8SLM4_9APHY)

HSP 1 Score: 60.1 bits (144), Expect = 9.420e-9
Identity = 31/75 (41.33%), Postives = 43/75 (57.33%), Query Frame = 1
Query:    7 PVRFSDIKKLTHKTLWNEAVRVEFEDLENPKAWTYVDNVRKGSNVVSARWVFAWKIDEQGNVTKPKARLVARGFS 231
            P   ++ K+      W EA++ E E L     W  V+    G+N+VS RWVF  K D  GN+++ +ARLVARGFS
Sbjct:  998 PASLAEAKRRPEWPRWEEAMKEEMEALAKHGTWR-VERPPLGTNIVSCRWVFHAKKDASGNISRYRARLVARGFS 1071          
BLAST of mRNA_H-paniculata_contig24513.6645.1 vs. uniprot
Match: A0A2G8SUK6_9APHY (Transcription factor n=1 Tax=Ganoderma sinense ZZ0214-1 TaxID=1077348 RepID=A0A2G8SUK6_9APHY)

HSP 1 Score: 60.1 bits (144), Expect = 9.460e-9
Identity = 30/75 (40.00%), Postives = 44/75 (58.67%), Query Frame = 1
Query:    7 PVRFSDIKKLTHKTLWNEAVRVEFEDLENPKAWTYVDNVRKGSNVVSARWVFAWKIDEQGNVTKPKARLVARGFS 231
            P   ++ K+      W EA++ E E L     W  +++   G+N+VS RWVF  K D  GN+++ +ARLVARGFS
Sbjct: 1001 PASLAEAKRRPEWPRWEEAMKEEMEALSKHGTWR-LEHPPPGTNIVSCRWVFHAKKDASGNISRYRARLVARGFS 1074          
BLAST of mRNA_H-paniculata_contig24513.6645.1 vs. uniprot
Match: A0A2G8S3F3_9APHY (Transcription factor n=1 Tax=Ganoderma sinense ZZ0214-1 TaxID=1077348 RepID=A0A2G8S3F3_9APHY)

HSP 1 Score: 60.1 bits (144), Expect = 9.460e-9
Identity = 31/75 (41.33%), Postives = 43/75 (57.33%), Query Frame = 1
Query:    7 PVRFSDIKKLTHKTLWNEAVRVEFEDLENPKAWTYVDNVRKGSNVVSARWVFAWKIDEQGNVTKPKARLVARGFS 231
            P   ++ K+      W EA++ E E L     W  V+    G+N+VS RWVF  K D  GN+++ +ARLVARGFS
Sbjct: 1014 PASLAEAKRRPEWPRWEEAMKEEMEALAKHGTWR-VERPPLGTNIVSCRWVFHAKKDASGNISRYRARLVARGFS 1087          
BLAST of mRNA_H-paniculata_contig24513.6645.1 vs. uniprot
Match: UPI001E2759C6 (uncharacterized protein LOC123684598 n=1 Tax=Harmonia axyridis TaxID=115357 RepID=UPI001E2759C6)

HSP 1 Score: 59.3 bits (142), Expect = 1.740e-8
Identity = 30/76 (39.47%), Postives = 42/76 (55.26%), Query Frame = 1
Query:    1 EPPVRFSDIKKLTHKTLWNEAVRVEFEDLENPKAWTYVDNVRKGSNVVSARWVFAWKIDEQGNVTKPKARLVARGF 228
            + PV + +     +K  W EAV    + LE    W  V+     + V+ ++WVF  K DE GN++K KARLVARGF
Sbjct:   13 DDPVSYDEAMSSENKAKWTEAVESAIKALEENDTWI-VEKNPNNAEVIDSKWVFKGKKDEAGNISKFKARLVARGF 87          
BLAST of mRNA_H-paniculata_contig24513.6645.1 vs. uniprot
Match: A0A182GGE6_AEDAL (Uncharacterized protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GGE6_AEDAL)

HSP 1 Score: 58.9 bits (141), Expect = 2.400e-8
Identity = 29/75 (38.67%), Postives = 43/75 (57.33%), Query Frame = 1
Query:    7 PVRFSDIKKLTHKTLWNEAVRVEFEDLENPKAWTYVDNVRKGSNVVSARWVFAWKIDEQGNVTKPKARLVARGFS 231
            P   SD++    + LW +A++ E + LE    WT +  +  G + +S +W+F  K  E G  T+ KARLVARGFS
Sbjct:  653 PESLSDLQIRDDRNLWQQAMKEEMDSLERNGTWT-LTKLPAGRSAISCKWIFKIKPGEDGQPTRYKARLVARGFS 726          
BLAST of mRNA_H-paniculata_contig24513.6645.1 vs. uniprot
Match: A0A1S3X7P2_TOBAC (uncharacterized mitochondrial protein AtMg00820-like n=1 Tax=Nicotiana tabacum TaxID=4097 RepID=A0A1S3X7P2_TOBAC)

HSP 1 Score: 56.6 bits (135), Expect = 2.970e-8
Identity = 28/69 (40.58%), Postives = 38/69 (55.07%), Query Frame = 1
Query:   25 IKKLTHKTLWNEAVRVEFEDLENPKAWTYVDNVRKGSNVVSARWVFAWKIDEQGNVTKPKARLVARGFS 231
            IK+      W   ++ E    E  K W  V  + K   V+  RWVF  K+DEQGN+TK KARLV +G++
Sbjct:   44 IKEALKDLYWIIIMQEELNKFERSKVWHLVQ-IPKNKTVIGTRWVFRNKLDEQGNITKNKARLVVQGYN 111          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24513.6645.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0J7K416_LASNI2.290e-1344.00Lectin receptor kinase n=1 Tax=Lasius niger TaxID=... [more]
A0A0J7KM48_LASNI3.110e-1344.00Integrase catalytic domain-containing protein n=2 ... [more]
A0A5C3EBA0_9BASI3.040e-1041.56Related to Retrotransposon protein n=1 Tax=Ustilag... [more]
A0A2S2NPY8_SCHGA5.520e-1041.33Copia protein (Fragment) n=1 Tax=Schizaphis gramin... [more]
A0A2G8SLM4_9APHY9.420e-941.33Transcription factor n=1 Tax=Ganoderma sinense ZZ0... [more]
A0A2G8SUK6_9APHY9.460e-940.00Transcription factor n=1 Tax=Ganoderma sinense ZZ0... [more]
A0A2G8S3F3_9APHY9.460e-941.33Transcription factor n=1 Tax=Ganoderma sinense ZZ0... [more]
UPI001E2759C61.740e-839.47uncharacterized protein LOC123684598 n=1 Tax=Harmo... [more]
A0A182GGE6_AEDAL2.400e-838.67Uncharacterized protein n=1 Tax=Aedes albopictus T... [more]
A0A1S3X7P2_TOBAC2.970e-840.58uncharacterized mitochondrial protein AtMg00820-li... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24513contigH-paniculata_contig24513:3556..3786 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score64.7
Seed ortholog evalue2.2e-08
Seed eggNOG ortholog5270.UM01393P0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Retrotransposon gag protein
EggNOG OGs38DPC@33154,3NUZ7@4751,3V2N5@5204,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelBasidiomycota
Best eggNOG OGNA|NA|NA
Exons1
Model size231
Cds size231
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929710.8916824-CDS-H-paniculata_contig24513:3555..37861622929710.8916824-CDS-H-paniculata_contig24513:3555..3786Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24513 3556..3786 +
1691480977.6127086-CDS-H-paniculata_contig24513:3555..37861691480977.6127086-CDS-H-paniculata_contig24513:3555..3786Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24513 3556..3786 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24513.6645.1prot_H-paniculata_contig24513.6645.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24513 3556..3786 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24513.6645.1

>prot_H-paniculata_contig24513.6645.1 ID=prot_H-paniculata_contig24513.6645.1|Name=mRNA_H-paniculata_contig24513.6645.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=77bp
EPPVRFSDIKKLTHKTLWNEAVRVEFEDLENPKAWTYVDNVRKGSNVVSA
RWVFAWKIDEQGNVTKPKARLVARGFS
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mRNA from alignment at H-paniculata_contig24513:3556..3786+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24513.6645.1 ID=mRNA_H-paniculata_contig24513.6645.1|Name=mRNA_H-paniculata_contig24513.6645.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=231bp|location=Sequence derived from alignment at H-paniculata_contig24513:3556..3786+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGCCCCCTGTTCGTTTTTCAGACATCAAGAAGCTGACACATAAAACGTT GTGGAATGAGGCAGTCAGAGTAGAGTTTGAGGACTTGGAAAATCCCAAAG CTTGGACTTATGTAGACAATGTGCGGAAAGGTTCCAATGTTGTCAGTGCG AGATGGGTATTTGCATGGAAAATTGATGAGCAGGGGAACGTTACAAAGCC AAAGGCAAGGCTTGTAGCTCGAGGGTTTAGC
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Coding sequence (CDS) from alignment at H-paniculata_contig24513:3556..3786+

>mRNA_H-paniculata_contig24513.6645.1 ID=mRNA_H-paniculata_contig24513.6645.1|Name=mRNA_H-paniculata_contig24513.6645.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at H-paniculata_contig24513:3556..3786+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGCCCCCTGTTCGTTTTTCAGACATCAAGAAGCTGACACATAAAACGTT
GTGGAATGAGGCAGTCAGAGTAGAGTTTGAGGACTTGGAAAATCCCAAAG
CTTGGACTTATGTAGACAATGTGCGGAAAGGTTCCAATGTTGTCAGTGCG
AGATGGGTATTTGCATGGAAAATTGATGAGCAGGGGAACGTTACAAAGCC
AAAGGCAAGGCTTGTAGCTCGAGGGTTTAGCGAGCCCCCTGTTCGTTTTT
CAGACATCAAGAAGCTGACACATAAAACGTTGTGGAATGAGGCAGTCAGA
GTAGAGTTTGAGGACTTGGAAAATCCCAAAGCTTGGACTTATGTAGACAA
TGTGCGGAAAGGTTCCAATGTTGTCAGTGCGAGATGGGTATTTGCATGGA
AAATTGATGAGCAGGGGAACGTTACAAAGCCAAAGGCAAGGCTTGTAGCT
CGAGGGTTTAGC
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