mRNA_H-paniculata_contig24450.6623.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24450.6623.1
Unique NamemRNA_H-paniculata_contig24450.6623.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig24450.6623.1 vs. uniprot
Match: D8LGK8_ECTSI (MYND-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGK8_ECTSI)

HSP 1 Score: 215 bits (548), Expect = 1.230e-64
Identity = 128/197 (64.97%), Postives = 145/197 (73.60%), Query Frame = 1 
Query:    1 EEAEAIRASRLRLAEAFLRLLAERREWVARSLAMAANATPTDMSGAGAATPKPVTINNLLVNSLAHPELLGRFSRETPVRLRAQAVAAARQCQADGTFAPDFAQHFARMLGLGTVQEHQRRIAGMAVDKVNKKREVSSKAIVRCARPSCGKVQG-AQGDDLVKFKVCSRCQVAHYCSSXXXXXXWKEGHKRDCKKAS 588
            E  +A RA+R RLAEAFLRLLAERREWVARSLAMAANA+PTD+SG GA    PVTINNLLVNSLAH +LLG F+R TPVRLRAQAVAAARQC+ DGTFAP F    AR+LGLG  QE  RR+AG  V K+ K +E +  A ++CA   CGK QG A G    KFKVCSRCQVA YCS       WK  HK +C++AS
Sbjct:  286 ETDKASRAARQRLAEAFLRLLAERREWVARSLAMAANASPTDLSGGGATAAAPVTINNLLVNSLAHADLLGAFTRLTPVRLRAQAVAAARQCETDGTFAPGFGAQLARLLGLGGQQELNRRMAGHTVQKI-KNKEAARAANIKCAM--CGKRQGNASGG--AKFKVCSRCQVAMYCSGECQKAHWKT-HKMECRRAS 476
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24450.6623.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LGK8_ECTSI1.230e-6464.97MYND-type domain-containing protein n=2 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24450contigH-paniculata_contig24450:453..1396 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZinc finger, MYND-type
Ec32 orthologEc-10_001660.1
Exons2
Model size594
Cds size594
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929707.4009268-CDS-H-paniculata_contig24450:452..8801622929707.4009268-CDS-H-paniculata_contig24450:452..880Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24450 453..880 +
1691480975.9401057-CDS-H-paniculata_contig24450:452..8801691480975.9401057-CDS-H-paniculata_contig24450:452..880Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24450 453..880 +
1622929707.4540462-CDS-H-paniculata_contig24450:1230..13961622929707.4540462-CDS-H-paniculata_contig24450:1230..1396Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24450 1231..1396 +
1691480975.9501162-CDS-H-paniculata_contig24450:1230..13961691480975.9501162-CDS-H-paniculata_contig24450:1230..1396Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24450 1231..1396 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24450.6623.1prot_H-paniculata_contig24450.6623.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24450 453..1396 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24450.6623.1

>prot_H-paniculata_contig24450.6623.1 ID=prot_H-paniculata_contig24450.6623.1|Name=mRNA_H-paniculata_contig24450.6623.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=198bp
EEAEAIRASRLRLAEAFLRLLAERREWVARSLAMAANATPTDMSGAGAAT
PKPVTINNLLVNSLAHPELLGRFSRETPVRLRAQAVAAARQCQADGTFAP
DFAQHFARMLGLGTVQEHQRRIAGMAVDKVNKKREVSSKAIVRCARPSCG
KVQGAQGDDLVKFKVCSRCQVAHYCSSKCQVAHWKEGHKRDCKKASK*
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mRNA from alignment at H-paniculata_contig24450:453..1396+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24450.6623.1 ID=mRNA_H-paniculata_contig24450.6623.1|Name=mRNA_H-paniculata_contig24450.6623.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=944bp|location=Sequence derived from alignment at H-paniculata_contig24450:453..1396+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGAGGCCGAAGCCATTCGTGCCAGCAGGCTTCGCTTGGCGGAAGCCTT
CCTTCGGCTTCTTGCAGAGCGCCGCGAATGGGTCGCCCGCAGCTTAGCCA
TGGCGGCCAACGCCACGCCCACCGACATGTCAGGAGCCGGCGCGGCCACC
CCTAAGCCGGTGACGATTAACAACCTGCTGGTAAACTCTTTGGCGCACCC
TGAGCTTTTGGGGCGTTTCTCGCGTGAGACTCCCGTGCGGTTGAGGGCCC
AGGCAGTGGCAGCGGCGCGGCAGTGTCAGGCGGATGGGACGTTTGCGCCG
GACTTTGCGCAGCACTTCGCGCGGATGCTGGGACTGGGCACGGTGCAGGA
GCACCAGCGGAGGATTGCGGGGATGGCCGTGGACAAGGTGAACAAGAAGC
GGGAGGTGTCTTCGAAGGCGATAGTTCGGTGAGTTCGTTGTGTGTTGCTT
GTCTGTATGTGTGTCTCTGTGTGTGTGTATACACACAAAGGAAGGTATTT
TCCTCCTCTCCAGGCACTTGTGGGAATTATTCCTTTGTATTGGTGTAGTC
AGTATCCACATACAGTGGTTTTGTAGTGTAGTGTTGGGTTGGGTGTTAAG
TCTGGGTGGGTGGGGGGGGGAGGGAAGAGGGGAGTTATTGAAGTTGGGCA
GGCGTAGGTGATGATTCTCGTTTTAATGACTCGCTTGACTTCCAACCATG
CCCACAATATCACCAAAAACGTAATCACTTGAGCACTCTATTGCTTTCAT
TTTTTTTTTTTTTTTTCAAATTCGTCAGGTGTGCGAGGCCGTCGTGCGGT
AAGGTACAGGGGGCACAAGGTGACGACTTGGTCAAGTTCAAAGTGTGCAG
TCGCTGCCAGGTGGCACACTACTGCTCGAGCAAGTGTCAGGTGGCTCACT
GGAAAGAAGGGCACAAACGGGATTGCAAAAAAGCCTCCAAGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig24450:453..1396+

>mRNA_H-paniculata_contig24450.6623.1 ID=mRNA_H-paniculata_contig24450.6623.1|Name=mRNA_H-paniculata_contig24450.6623.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1188bp|location=Sequence derived from alignment at H-paniculata_contig24450:453..1396+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGAGGCCGAAGCCATTCGTGCCAGCAGGCTTCGCTTGGCGGAAGCCTT
CCTTCGGCTTCTTGCAGAGCGCCGCGAATGGGTCGCCCGCAGCTTAGCCA
TGGCGGCCAACGCCACGCCCACCGACATGTCAGGAGCCGGCGCGGCCACC
CCTAAGCCGGTGACGATTAACAACCTGCTGGTAAACTCTTTGGCGCACCC
TGAGCTTTTGGGGCGTTTCTCGCGTGAGACTCCCGTGCGGTTGAGGGCCC
AGGCAGTGGCAGCGGCGCGGCAGTGTCAGGCGGATGGGACGTTTGCGCCG
GACTTTGCGCAGCACTTCGCGCGGATGCTGGGACTGGGCACGGTGCAGGA
GCACCAGCGGAGGATTGCGGGGATGGCCGTGGACAAGGTGAACAAGAAGC
GGGAGGTGTCTTCGAAGGCGATAGTTCGGAAGAGGCCGAAGCCATTCGTG
CCAGCAGGCTTCGCTTGGCGGAAGCCTTCCTTCGGCTTCTTGCAGAGCGC
CGCGAATGGGTCGCCCGCAGCTTAGCCATGGCGGCCAACGCCACGCCCAC
CGACATGTCAGGAGCCGGCGCGGCCACCCCTAAGCCGGTGACGATTAACA
ACCTGCTGGTAAACTCTTTGGCGCACCCTGAGCTTTTGGGGCGTTTCTCG
CGTGAGACTCCCGTGCGGTTGAGGGCCCAGGCAGTGGCAGCGGCGCGGCA
GTGTCAGGCGGATGGGACGTTTGCGCCGGACTTTGCGCAGCACTTCGCGC
GGATGCTGGGACTGGGCACGGTGCAGGAGCACCAGCGGAGGATTGCGGGG
ATGGCCGTGGACAAGGTGAACAAGAAGCGGGAGGTGTCTTCGAAGGCGAT
AGTTCGGTGTGCGAGGCCGTCGTGCGGTAAGGTACAGGGGGCACAAGGTG
ACGACTTGGTCAAGTTCAAAGTGTGCAGTCGCTGCCAGGTGGCACACTAC
TGCTCGAGCAAGTGTCAGGTGGCTCACTGGAAAGAAGGGCACAAACGGGA
TTGCAAAAAAGCCTCCAAGTAAGTGTGCGAGGCCGTCGTGCGGTAAGGTA
CAGGGGGCACAAGGTGACGACTTGGTCAAGTTCAAAGTGTGCAGTCGCTG
CCAGGTGGCACACTACTGCTCGAGCAAGTGTCAGGTGGCTCACTGGAAAG
AAGGGCACAAACGGGATTGCAAAAAAGCCTCCAAGTAA
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