prot_H-paniculata_contig24450.6623.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig24450.6623.1
Unique Nameprot_H-paniculata_contig24450.6623.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length198
Homology
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BLAST of mRNA_H-paniculata_contig24450.6623.1 vs. uniprot
Match: D8LGK8_ECTSI (MYND-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGK8_ECTSI)

HSP 1 Score: 215 bits (548), Expect = 1.230e-64
Identity = 128/197 (64.97%), Postives = 145/197 (73.60%), Query Frame = 0 
Query:    1 EEAEAIRASRLRLAEAFLRLLAERREWVARSLAMAANATPTDMSGAGAATPKPVTINNLLVNSLAHPELLGRFSRETPVRLRAQAVAAARQCQADGTFAPDFAQHFARMLGLGTVQEHQRRIAGMAVDKVNKKREVSSKAIVRCARPSCGKVQG-AQGDDLVKFKVCSRCQVAHYCSSXXXXXXWKEGHKRDCKKAS 196
            E  +A RA+R RLAEAFLRLLAERREWVARSLAMAANA+PTD+SG GA    PVTINNLLVNSLAH +LLG F+R TPVRLRAQAVAAARQC+ DGTFAP F    AR+LGLG  QE  RR+AG  V K+ K +E +  A ++CA   CGK QG A G    KFKVCSRCQVA YCS       WK  HK +C++AS
Sbjct:  286 ETDKASRAARQRLAEAFLRLLAERREWVARSLAMAANASPTDLSGGGATAAAPVTINNLLVNSLAHADLLGAFTRLTPVRLRAQAVAAARQCETDGTFAPGFGAQLARLLGLGGQQELNRRMAGHTVQKI-KNKEAARAANIKCAM--CGKRQGNASGG--AKFKVCSRCQVAMYCSGECQKAHWKT-HKMECRRAS 476
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24450.6623.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LGK8_ECTSI1.230e-6464.97MYND-type domain-containing protein n=2 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.60.180coord: 136..195
e-value: 3.3E-11
score: 44.8
NoneNo IPR availableSUPERFAMILY144232HIT/MYND zinc finger-likecoord: 161..194
IPR002893Zinc finger, MYND-typePFAMPF01753zf-MYNDcoord: 148..192
e-value: 4.1E-8
score: 33.2
IPR002893Zinc finger, MYND-typePROSITEPS50865ZF_MYND_2coord: 146..192
score: 10.989

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24450contigH-paniculata_contig24450:453..1396 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24450.6623.1mRNA_H-paniculata_contig24450.6623.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig24450 453..1396 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig24450.6623.1 ID=prot_H-paniculata_contig24450.6623.1|Name=mRNA_H-paniculata_contig24450.6623.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=198bp
EEAEAIRASRLRLAEAFLRLLAERREWVARSLAMAANATPTDMSGAGAAT
PKPVTINNLLVNSLAHPELLGRFSRETPVRLRAQAVAAARQCQADGTFAP
DFAQHFARMLGLGTVQEHQRRIAGMAVDKVNKKREVSSKAIVRCARPSCG
KVQGAQGDDLVKFKVCSRCQVAHYCSSKCQVAHWKEGHKRDCKKASK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002893Znf_MYND