mRNA_H-paniculata_contig24403.6609.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig24403.6609.1 vs. uniprot
Match: A0A6H5K111_9PHAE (TrmE-type G domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K111_9PHAE) HSP 1 Score: 181 bits (459), Expect = 1.790e-48 Identity = 107/189 (56.61%), Postives = 123/189 (65.08%), Query Frame = 1
Query: 34 LDNVIIVANKADLAVDLPPXXXXXXXXXXXXXXXXXXXXXXXXXXTAEYPSSEIVEN-----------------QGKEEGRRRQS--LWRVSCKTKEGLDVFMGHLEAEVRSRFQGAEDDESPLITRRRHRQHVESCLSALRASQRANLPLDLAAEELRISNRELGRITGAVGVEELLDVIFRDFCIGK 543
LD++I+VANKADLA+ L X + ++E V + +G EEG +W+VSCKTKEGLD FM HLEAEVRSRFQGA DDESPLITRRRHRQHVE+CL ALRA+QR +PLDLAAEELRI++ ELGRITGAVGVEELLDVIFRDFCIGK
Sbjct: 439 LDDLIVVANKADLALTLLEGESGEADHHERELTSLAAAAAAATXASGPGTTAEAVGSRAGAAETDGVGAATRGTEGDEEGTSGSGGRVWKVSCKTKEGLDGFMEHLEAEVRSRFQGAADDESPLITRRRHRQHVEACLLALRAAQRPQMPLDLAAEELRIASSELGRITGAVGVEELLDVIFRDFCIGK 627
BLAST of mRNA_H-paniculata_contig24403.6609.1 vs. uniprot
Match: D8LG51_ECTSI (TrmE, organellal GTPase involved in tRNA modification n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG51_ECTSI) HSP 1 Score: 181 bits (460), Expect = 6.780e-48 Identity = 125/202 (61.88%), Postives = 138/202 (68.32%), Query Frame = 1
Query: 1 GGESSRSVGGALDNVIIVANKADLAVDL-------PPXXXXXXXXXXXXXXXXXXXXXXXXXXTAEYPSSEIVE------------NQGKEEGRRRQS--LWRVSCKTKEGLDVFMGHLEAEVRSRFQGAEDDESPLITRRRHRQHVESCLSALRASQRANLPLDLAAEELRISNRELGRITGAVGVEELLDVIFRDFCIGK 543
G SS ALD++I+VANKADLA+ L XXXXXXXXXXXXX TAE S +G EEGR +W++SCKTKEGLD FM HLEAEVRSRFQGA DDESPLITRRRHRQHVE+CL ALRA+QR +PLDLAAEELRI++ ELGRITGAVGVEELLDVIFRDFCIGK
Sbjct: 589 GSGSSGGGSAALDDLIVVANKADLALTLLEGESGEAEHHEQELTSLXXXXXXXXXXXXXGPGRTAEAVGSRAGAAEMDGVGAATRGTEGDEEGRSGGGGRVWKLSCKTKEGLDGFMEHLEAEVRSRFQGAADDESPLITRRRHRQHVEACLLALRAAQRPQMPLDLAAEELRIASSELGRITGAVGVEELLDVIFRDFCIGK 790
BLAST of mRNA_H-paniculata_contig24403.6609.1 vs. uniprot
Match: A0A836CK05_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK05_9STRA) HSP 1 Score: 135 bits (341), Expect = 1.280e-32 Identity = 67/105 (63.81%), Postives = 83/105 (79.05%), Query Frame = 1
Query: 232 QSLWRVSCKTKEGLDVFMGHLEAEVRSRFQGAEDDE-SPLITRRRHRQHVESCLSALRASQRANLPLDLAAEELRISNRELGRITGAVGVEELLDVIFRDFCIGK 543
Q +W++SCKT EG++ F+ HLE E+ R+Q + E +PLITR RHR HV++CLSAL S +LP+DLAAEELR ++ ELGRITGAV VEELLDVIFRDFCIGK
Sbjct: 369 QPVWQLSCKTGEGVEAFLRHLEDEIARRYQTQQGQEDAPLITRARHRHHVQACLSALEGSMDPSLPMDLAAEELRYASAELGRITGAVDVEELLDVIFRDFCIGK 473
BLAST of mRNA_H-paniculata_contig24403.6609.1 vs. uniprot
Match: A0A7S2USR2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2USR2_9STRA) HSP 1 Score: 109 bits (273), Expect = 1.090e-24 Identity = 59/104 (56.73%), Postives = 76/104 (73.08%), Query Frame = 1
Query: 235 SLWRVSCKTKEGLDVFMGHLEAEVRSRFQGAEDDESPLITRRRHRQHVESCLSALR-ASQRANLPL-DLAAEELRISNRELGRITGAVGVEELLDVIFRDFCIG 540
++W VSC + +G + F+ HL EV+ +F + +D +PLITR RHR H+E C+ AL A+ AN DLAAEELR++ ELGRITGAV VEE+LDVIFRDFCIG
Sbjct: 140 NVWVVSCNSGDGTEEFLSHLATEVKRKFDRSGED-APLITRSRHRTHIERCVQALETAALLANTAATDLAAEELRVAALELGRITGAVDVEEVLDVIFRDFCIG 242
BLAST of mRNA_H-paniculata_contig24403.6609.1 vs. uniprot
Match: R1DA12_EMIHU (TrmE-type G domain-containing protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DA12_EMIHU) HSP 1 Score: 113 bits (283), Expect = 2.480e-24 Identity = 61/106 (57.55%), Postives = 75/106 (70.75%), Query Frame = 1
Query: 241 WRVSCKTKEGLDVFMGHLEAEVRSRFQGAEDDESPLITRRRHRQHVESCLSALR-----ASQRANLPLDLAAEELRISNRELGRITGAVGVEELLDVIFRDFCIGK 543
WR+SC T EG+ F+ L VR R G+++ E+PL+TR RHRQH+E C++AL AS PLDLA EELR ++ ELGRITG V VEE+LDVIFRDFCIGK
Sbjct: 444 WRISCTTGEGVAPFLDQLGGIVR-RLYGSDEGETPLVTRARHRQHLEGCVAALAQFEELASLGEAAPLDLACEELRTASLELGRITGRVDVEEVLDVIFRDFCIGK 548
BLAST of mRNA_H-paniculata_contig24403.6609.1 vs. uniprot
Match: A0A0M0JVR3_9EUKA (tRNA modification gtpase n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JVR3_9EUKA) HSP 1 Score: 107 bits (268), Expect = 1.750e-22 Identity = 60/110 (54.55%), Postives = 75/110 (68.18%), Query Frame = 1
Query: 229 RQSLWRVSCKTKEGLDVFMGHLEAEVRSRFQGAEDDESPLITRRRHRQHVESCLSALRA-SQRANL----PLDLAAEELRISNRELGRITGAVGVEELLDVIFRDFCIGK 543
R+ + +SC T EG+ F+ L + S++ GA D E+ LITR RHR+H+ C AL A Q A L PLDLAAEE+RI+ ELG+ITG + VEELLDVIFRDFCIGK
Sbjct: 373 RERQYHLSCTTGEGVQPFLDALSQMIASKY-GASDREAALITRARHREHLRRCADALEAFEQYAGLGDSAPLDLAAEEIRIAANELGKITGRIDVEELLDVIFRDFCIGK 481
BLAST of mRNA_H-paniculata_contig24403.6609.1 vs. uniprot
Match: A0A4D9CTT5_9STRA (TrmE-type G domain-containing protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CTT5_9STRA) HSP 1 Score: 107 bits (266), Expect = 2.910e-22 Identity = 63/117 (53.85%), Postives = 79/117 (67.52%), Query Frame = 1
Query: 208 GKEEGRRRQSLWRVSCKTKEGLDVFMGHLEAEVRSRFQ--GAEDD--ESPLITRRRHRQHVESCLSALRASQ-RANLPLDLAAEELRISNRELGRITGAVGVEELLDVIFRDFCIGK 543
G +G + + VS T EG++ + L+A + F G +D+ E+P+ITR RHR HVE CL AL AS L LD+AAEELRI++ ELGRITGAV VEE+LDVIFRDFCIGK
Sbjct: 349 GAGKGGTSTAAYLVSLSTGEGVEEMLAGLQARLEEVFDKDGTDDERAEAPVITRARHRVHVERCLEALTASMGEQGLGLDVAAEELRIASTELGRITGAVDVEEVLDVIFRDFCIGK 465
BLAST of mRNA_H-paniculata_contig24403.6609.1 vs. uniprot
Match: A0A7S0NV32_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NV32_9EUKA) HSP 1 Score: 103 bits (256), Expect = 3.950e-22 Identity = 56/106 (52.83%), Postives = 72/106 (67.92%), Query Frame = 1
Query: 241 WRVSCKTKEGLDVFMGHLEAEVRSRFQGAEDDESPLITRRRHRQHVESCLSALRA-----SQRANLPLDLAAEELRISNRELGRITGAVGVEELLDVIFRDFCIGK 543
W +SC+T EG+ F+ L V+ + GA E L+TR RHRQH+ +C++A+ A S+ P+D+AAEELR + ELGRITG V VEELLDVIFRDFCIGK
Sbjct: 151 WALSCQTGEGVQPFLDALAKMVKELY-GASQREPALVTRARHRQHLGACVAAMEAYADLASRGDAAPVDIAAEELRTAVNELGRITGRVDVEELLDVIFRDFCIGK 255
BLAST of mRNA_H-paniculata_contig24403.6609.1 vs. uniprot
Match: A0A448YYS9_9STRA (TrmE-type G domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YYS9_9STRA) HSP 1 Score: 107 bits (267), Expect = 5.360e-22 Identity = 56/115 (48.70%), Postives = 80/115 (69.57%), Query Frame = 1
Query: 214 EEGRRRQSLWRVSCKTKEGLDVFMGHLEAEVRSRFQGAED-DESPLITRRRHRQHVESCLSALRA----SQRANLPLDLAAEELRISNRELGRITGAVGVEELLDVIFRDFCIGK 543
+E + ++ +SC+ +EG+D F+ L EV +R +G+ D E +ITR RHRQHVE+ + AL S + N+ +D+AAEELR++ ELGRITGAV VE++LDV+F DFCIGK
Sbjct: 840 QESKFGDGIFDISCQNQEGIDTFLDALTQEVVTRTRGSADVGEGAMITRARHRQHVEAAVEALERFAMLSTQGNMAVDMAAEELRLAGSELGRITGAVDVEDVLDVLFSDFCIGK 954
BLAST of mRNA_H-paniculata_contig24403.6609.1 vs. uniprot
Match: A0A8J5XZ82_DIALT (TrmE-type G domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XZ82_DIALT) HSP 1 Score: 104 bits (260), Expect = 3.020e-21 Identity = 51/100 (51.00%), Postives = 72/100 (72.00%), Query Frame = 1
Query: 247 VSCKTKEGLDVFMGHLEAEVRSRFQGAEDDESPLITRRRHRQHVESCLSALRASQRAN-LPLDLAAEELRISNRELGRITGAVGVEELLDVIFRDFCIGK 543
+SC+T EG+D + LEA VR+ +G E+ ++TR RHR+H+E + AL R + L +DLAAEELRI+ E+G++TG + VEE+LD+IFRDFCIGK
Sbjct: 462 ISCETGEGMDALLDALEARVRALLEGEGGGETAIVTRARHREHLEQAVGALERFARLDGLMVDLAAEELRIAASEVGKVTGTIRVEEMLDIIFRDFCIGK 561 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24403.6609.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig24403.6609.1 >prot_H-paniculata_contig24403.6609.1 ID=prot_H-paniculata_contig24403.6609.1|Name=mRNA_H-paniculata_contig24403.6609.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=88bp MGHLEAEVRSRFQGAEDDESPLITRRRHRQHVESCLSALRASQRANLPLDback to top mRNA from alignment at H-paniculata_contig24403:415..2168+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig24403.6609.1 ID=mRNA_H-paniculata_contig24403.6609.1|Name=mRNA_H-paniculata_contig24403.6609.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1754bp|location=Sequence derived from alignment at H-paniculata_contig24403:415..2168+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig24403:415..2168+ >mRNA_H-paniculata_contig24403.6609.1 ID=mRNA_H-paniculata_contig24403.6609.1|Name=mRNA_H-paniculata_contig24403.6609.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=528bp|location=Sequence derived from alignment at H-paniculata_contig24403:415..2168+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |