mRNA_H-paniculata_contig24372.6602.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24372.6602.1
Unique NamemRNA_H-paniculata_contig24372.6602.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig24372.6602.1 vs. uniprot
Match: A0A8J4CGM5_9CHLO (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4CGM5_9CHLO)

HSP 1 Score: 79.7 bits (195), Expect = 3.770e-16
Identity = 46/126 (36.51%), Postives = 64/126 (50.79%), Query Frame = 1
Query:    7 PPNFQEAVRFEHSSVYHNAMTTEYQDLIQTGTFDQENPFNNKKPTNSMWIHIWKTDPNCIVTGAKARLVARGDKQVQGLDCDNTFAPTPLIATVKTGTAVANELGLSIFHWDVSQTFIQGELEEDI 384
            P  ++EA+    +  +  AM  E   L   GT+  E+P          W++  K D N  +   KAR VA+G KQ++G+D D  FAPT   ATV+   A A   G+ + H DV   F+ GELEE I
Sbjct:    2 PSTYEEAINSPEAVHWRQAMDEEIASLHAQGTWRLEHPPQGANVIPGKWVYKLKRDANGGIERYKARYVAKGYKQIEGVDFDEVFAPTGCHATVRAFLASAAAEGMEVHHVDVRTAFLHGELEEQI 127          
BLAST of mRNA_H-paniculata_contig24372.6602.1 vs. uniprot
Match: A0A1Y1L0U6_PHOPY (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1L0U6_PHOPY)

HSP 1 Score: 77.8 bits (190), Expect = 2.670e-15
Identity = 48/134 (35.82%), Postives = 69/134 (51.49%), Query Frame = 1
Query:    4 APPNFQEAVRFEHSSVYHNAMTTEYQDLIQTGTFDQENPFNNKKPTNSMWIHIWKTDPNCIVTGAKARLVARGDKQVQGLDCDNTFAPTPLIATVKTGTAVANELGLSIFHWDVSQTFIQGELEEDICLRLAEG 405
            AP ++ EA+R  +S  +  AM  E Q L +   +  +     KK   S W++  KT     +   KARLVA+G  Q  G+D   TF+P     T++T   VA    L +  +DVS TF+ G+LEE+I L   EG
Sbjct:   18 APQSYAEAMRSSNSEEWTKAMAEEIQALNKNQVWTLQVLPEGKKAIQSRWVYKIKTKTGDTIERFKARLVAKGCSQKHGIDIQETFSPVARYETIRTVLGVAAAEKLHLTQFDVSTTFLYGDLEEEIFLSQPEG 151          
BLAST of mRNA_H-paniculata_contig24372.6602.1 vs. uniprot
Match: A0A8J4BZC1_9CHLO (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4BZC1_9CHLO)

HSP 1 Score: 79.7 bits (195), Expect = 1.020e-14
Identity = 46/126 (36.51%), Postives = 64/126 (50.79%), Query Frame = 1
Query:    7 PPNFQEAVRFEHSSVYHNAMTTEYQDLIQTGTFDQENPFNNKKPTNSMWIHIWKTDPNCIVTGAKARLVARGDKQVQGLDCDNTFAPTPLIATVKTGTAVANELGLSIFHWDVSQTFIQGELEEDI 384
            P  ++EA+    +  +  AM  E   L   GT+  E+P          W++  K D N  +   KAR VA+G KQ++G+D D  FAPT   ATV+   A A   G+ + H DV   F+ GELEE I
Sbjct:  597 PSTYEEAINSPEAVHWRQAMDEEIASLHAQGTWRLEHPPQGANVIPGKWVYKLKRDANGGIERYKARYVAKGYKQIEGVDFDEVFAPTGCHATVRAFLASAAAEGMEVHHVDVRTAFLHGELEEQI 722          
BLAST of mRNA_H-paniculata_contig24372.6602.1 vs. uniprot
Match: A0A8J4FJX1_9CHLO (Uncharacterized protein (Fragment) n=2 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4FJX1_9CHLO)

HSP 1 Score: 79.7 bits (195), Expect = 1.020e-14
Identity = 46/126 (36.51%), Postives = 64/126 (50.79%), Query Frame = 1
Query:    7 PPNFQEAVRFEHSSVYHNAMTTEYQDLIQTGTFDQENPFNNKKPTNSMWIHIWKTDPNCIVTGAKARLVARGDKQVQGLDCDNTFAPTPLIATVKTGTAVANELGLSIFHWDVSQTFIQGELEEDI 384
            P  ++EA+    +  +  AM  E   L   GT+  E+P          W++  K D N  +   KAR VA+G KQ++G+D D  FAPT   ATV+   A A   G+ + H DV   F+ GELEE I
Sbjct:  869 PSTYEEAINSPEAVHWRQAMDEEIASLHAQGTWRLEHPPQGANVIPGKWVYKLKRDANGGIERYKARYVAKGYKQIEGVDFDEVFAPTGCHATVRAFLASAAAEGMEVHHVDVRTAFLHGELEEQI 994          
BLAST of mRNA_H-paniculata_contig24372.6602.1 vs. uniprot
Match: A0A8J4GWX3_9CHLO (Uncharacterized protein n=8 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4GWX3_9CHLO)

HSP 1 Score: 79.7 bits (195), Expect = 1.050e-14
Identity = 46/126 (36.51%), Postives = 64/126 (50.79%), Query Frame = 1
Query:    7 PPNFQEAVRFEHSSVYHNAMTTEYQDLIQTGTFDQENPFNNKKPTNSMWIHIWKTDPNCIVTGAKARLVARGDKQVQGLDCDNTFAPTPLIATVKTGTAVANELGLSIFHWDVSQTFIQGELEEDI 384
            P  ++EA+    +  +  AM  E   L   GT+  E+P          W++  K D N  +   KAR VA+G KQ++G+D D  FAPT   ATV+   A A   G+ + H DV   F+ GELEE I
Sbjct:  871 PSTYEEAINSPEAVHWRQAMDEEIASLHAQGTWRLEHPPQGANVIPGKWVYKLKRDANGGIERYKARYVAKGYKQIEGVDFDEVFAPTGCHATVRAFLASAAAEGMEVHHVDVRTAFLHGELEEQI 996          
BLAST of mRNA_H-paniculata_contig24372.6602.1 vs. uniprot
Match: A0A7D9D6Q5_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9D6Q5_PARCT)

HSP 1 Score: 79.0 bits (193), Expect = 1.900e-14
Identity = 46/133 (34.59%), Postives = 68/133 (51.13%), Query Frame = 1
Query:    7 PPNFQEAVRFEHSSVYHNAMTTEYQDLIQTGTFDQENPFNNKKPTNSMWIHIWKTDPNCIVTGAKARLVARGDKQVQGLDCDNTFAPTPLIATVKTGTAVANELGLSIFHWDVSQTFIQGELEEDICLRLAEG 405
            P N  EA   EHS+ +  A  +E   LI+  T++  +    K    S W+   KTD N  V   KARLVA+G  Q +G+D    F+P     T+++  A++N     +   DV   F+QG LEE+I +R  +G
Sbjct:  810 PINMDEAFSGEHSAEWKQATDSENNSLIENETWELVSLPKGKNVVGSKWVFKVKTDENGCVQRYKARLVAQGYTQAEGVDYSEVFSPVVRNTTIRSLLALSNAKNWEVHQMDVKTAFLQGNLEEEIYMRQPDG 942          
BLAST of mRNA_H-paniculata_contig24372.6602.1 vs. uniprot
Match: O04013_VOLCA (Reverse transcriptase, gag, polyprotein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=O04013_VOLCA)

HSP 1 Score: 79.0 bits (193), Expect = 1.940e-14
Identity = 46/135 (34.07%), Postives = 72/135 (53.33%), Query Frame = 1
Query:    1 PAPPNFQEAVRFEHSSVYHNAMTTEYQDLIQTGTFDQENPFNNKKPTNSMWIHIWKTDPNCIVTGAKARLVARGDKQVQGLDCDNTFAPTPLIATVKTGTAVANELGLSIFHWDVSQTFIQGELEEDICLRLAEG 405
            P P +FQEA++   + ++  AM  E   L + GT+  E+P  +       W++  K+  +  V   KAR VA+G  QV+G+D D  FAPT   ATV+  +  A   G+ + H DV   F+ G+L+E + +   EG
Sbjct:  842 PNPTSFQEAIKSPQADMWWEAMEEEIASLHRLGTWRLEHPPPDANVVPGRWVYKVKSGADGEVERYKARFVAKGYMQVEGVDYDEVFAPTSNHATVRAFSPKAAAKGIEVHHLDVRTAFLHGDLDEVVYVDQPEG 976          
BLAST of mRNA_H-paniculata_contig24372.6602.1 vs. uniprot
Match: A0A251TQK1_HELAN (Putative reverse transcriptase, RNA-dependent DNA polymerase n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251TQK1_HELAN)

HSP 1 Score: 74.3 bits (181), Expect = 2.360e-14
Identity = 42/115 (36.52%), Postives = 64/115 (55.65%), Query Frame = 1
Query:   61 AMTTEYQDLIQTGTFDQENPFNNKKPTNSMWIHIWKTDPNCIVTGAKARLVARGDKQVQGLDCDNTFAPTPLIATVKTGTAVANELGLSIFHWDVSQTFIQGELEEDICLRLAEG 405
            AM  E + L + G +  EN    K+  +S W++  K  PN  V   KARLVA G  Q +G+D  +TFAP   + TV+T  AVA +    I   D++  F+ G+L ED+ +++ +G
Sbjct:    9 AMEKEIRALEENGIWTLENLPEGKRTIDSKWVYKVKYKPNGEVERYKARLVANGFTQQEGVDYHDTFAPVAKLVTVRTLLAVATKKNWIISQLDLNNAFLHGDLNEDVNMKIPQG 123          
BLAST of mRNA_H-paniculata_contig24372.6602.1 vs. uniprot
Match: A0A8J4GXS9_9CHLO (Integrase catalytic domain-containing protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4GXS9_9CHLO)

HSP 1 Score: 78.6 bits (192), Expect = 2.580e-14
Identity = 46/126 (36.51%), Postives = 64/126 (50.79%), Query Frame = 1
Query:    7 PPNFQEAVRFEHSSVYHNAMTTEYQDLIQTGTFDQENPFNNKKPTNSMWIHIWKTDPNCIVTGAKARLVARGDKQVQGLDCDNTFAPTPLIATVKTGTAVANELGLSIFHWDVSQTFIQGELEEDI 384
            P  ++EA+    +  +  AM  E   L   GT+  E+P          W++  K D N  +   KAR VA+G KQ++G+D D  FAPT   ATV+   A A   G+ + H DV   F+ GELEE I
Sbjct:  451 PSTYEEAINSLEAVHWRQAMDEEIASLHAQGTWRLEHPPQGANVIPGKWVYKLKRDANGGIERYKARYVAKGYKQIEGVDFDEVFAPTGCHATVQAFLASAAAEGMEVHHVDVRTAFLHGELEEQI 576          
BLAST of mRNA_H-paniculata_contig24372.6602.1 vs. uniprot
Match: A0A2K3MX29_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MX29_TRIPR)

HSP 1 Score: 78.6 bits (192), Expect = 2.630e-14
Identity = 47/133 (35.34%), Postives = 74/133 (55.64%), Query Frame = 1
Query:    7 PPNFQEAVRFEHSSVYHNAMTTEYQDLIQTGTFDQENPFNNKKPTNSMWIHIWKTDPNCIVTGAKARLVARGDKQVQGLDCDNTFAPTPLIATVKTGTAVANELGLSIFHWDVSQTFIQGELEEDICLRLAEG 405
            P +F EAV+ E    + +AM  E + L   GT+  E+  + KK     WI+  K + +  +   KARLV  G++QV+G+D + TFAPT  + TV+T  AVA      +   DV   F+ G+L+E++ ++L  G
Sbjct:  691 PNSFAEAVKDEK---WRDAMKEEIRALEDNGTWTIEDLPSGKKAIGCKWIYKIKYNSDGSIERHKARLVIHGNRQVEGVDYNETFAPTAKMVTVRTFLAVAAAKNFQLHQMDVRNAFLHGDLDEEVYMKLPPG 820          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24372.6602.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8J4CGM5_9CHLO3.770e-1636.51Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1Y1L0U6_PHOPY2.670e-1535.82Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8J4BZC1_9CHLO1.020e-1436.51Integrase catalytic domain-containing protein (Fra... [more]
A0A8J4FJX1_9CHLO1.020e-1436.51Uncharacterized protein (Fragment) n=2 Tax=Volvox ... [more]
A0A8J4GWX3_9CHLO1.050e-1436.51Uncharacterized protein n=8 Tax=Volvox reticulifer... [more]
A0A7D9D6Q5_PARCT1.900e-1434.59Retrovirus-related Pol poly from transposon TNT 1-... [more]
O04013_VOLCA1.940e-1434.07Reverse transcriptase, gag, polyprotein n=1 Tax=Vo... [more]
A0A251TQK1_HELAN2.360e-1436.52Putative reverse transcriptase, RNA-dependent DNA ... [more]
A0A8J4GXS9_9CHLO2.580e-1436.51Integrase catalytic domain-containing protein n=1 ... [more]
A0A2K3MX29_TRIPR2.630e-1435.34Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24372contigH-paniculata_contig24372:1562..1966 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score82.0
Seed ortholog evalue2.3e-13
Seed eggNOG ortholog28532.XP_010532348.1
Preferred nameUSP
KEGG rclassRC00002
KEGG koko:K12447
KEGG ReactionR00289,R00502,R01381,R03077,R08845
KEGG Pathwayko00040,ko00052,ko00053,ko00520,ko01100,ko01130,map00040,map00052,map00053,map00520,map01100,map01130
KEGG ModuleM00014
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003983,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006011,GO:0006082,GO:0006139,GO:0006725,GO:0006793,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009225,GO:0009226,GO:0009555,GO:0009987,GO:0010035,GO:0010038,GO:0010491,GO:0016740,GO:0016772,GO:0016779,GO:0017103,GO:0018130,GO:0019438,GO:0019752,GO:0032501,GO:0032502,GO:0033356,GO:0034641,GO:0034654,GO:0042221,GO:0042995,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046398,GO:0046483,GO:0046686,GO:0047338,GO:0047350,GO:0048229,GO:0048856,GO:0050896,GO:0051748,GO:0052573,GO:0055086,GO:0070569,GO:0071704,GO:0090406,GO:0120025,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901576
EggNOG free text desc.udp-sugar
EggNOG OGs37MVU@33090,3GGIU@35493,3HSQP@3699,COG2801@1,COG4284@1,KOG0017@2759,KOG2388@2759
EC2.7.7.64
COG Functional cat.M
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size405
Cds size405
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929703.7932942-CDS-H-paniculata_contig24372:1561..19661622929703.7932942-CDS-H-paniculata_contig24372:1561..1966Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24372 1562..1966 -
1691480974.083348-CDS-H-paniculata_contig24372:1561..19661691480974.083348-CDS-H-paniculata_contig24372:1561..1966Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24372 1562..1966 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24372.6602.1prot_H-paniculata_contig24372.6602.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24372 1562..1966 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24372.6602.1

>prot_H-paniculata_contig24372.6602.1 ID=prot_H-paniculata_contig24372.6602.1|Name=mRNA_H-paniculata_contig24372.6602.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=135bp
PAPPNFQEAVRFEHSSVYHNAMTTEYQDLIQTGTFDQENPFNNKKPTNSM
WIHIWKTDPNCIVTGAKARLVARGDKQVQGLDCDNTFAPTPLIATVKTGT
AVANELGLSIFHWDVSQTFIQGELEEDICLRLAEG
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mRNA from alignment at H-paniculata_contig24372:1562..1966-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24372.6602.1 ID=mRNA_H-paniculata_contig24372.6602.1|Name=mRNA_H-paniculata_contig24372.6602.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=405bp|location=Sequence derived from alignment at H-paniculata_contig24372:1562..1966- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGGCTCCACCTAATTTCCAAGAGGCAGTAAGGTTTGAACATAGTAGTGT ATATCATAATGCTATGACCACAGAATACCAAGATTTGATTCAAACAGGTA CTTTTGATCAAGAAAACCCATTCAATAATAAAAAACCAACCAATTCCATG TGGATACACATATGGAAAACAGACCCTAATTGCATAGTAACGGGTGCAAA GGCTAGACTAGTAGCTCGTGGAGACAAGCAAGTTCAAGGTCTAGACTGTG ACAACACATTCGCACCAACACCATTAATTGCTACCGTAAAAACGGGCACA GCAGTAGCAAACGAGCTAGGCTTGAGCATCTTTCATTGGGATGTATCGCA GACATTTATACAGGGAGAGTTGGAAGAAGACATCTGTTTGCGTTTGGCCG AAGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig24372:1562..1966-

>mRNA_H-paniculata_contig24372.6602.1 ID=mRNA_H-paniculata_contig24372.6602.1|Name=mRNA_H-paniculata_contig24372.6602.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=810bp|location=Sequence derived from alignment at H-paniculata_contig24372:1562..1966- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGGCTCCACCTAATTTCCAAGAGGCAGTAAGGTTTGAACATAGTAGTGT
ATATCATAATGCTATGACCACAGAATACCAAGATTTGATTCAAACAGGTA
CTTTTGATCAAGAAAACCCATTCAATAATAAAAAACCAACCAATTCCATG
TGGATACACATATGGAAAACAGACCCTAATTGCATAGTAACGGGTGCAAA
GGCTAGACTAGTAGCTCGTGGAGACAAGCAAGTTCAAGGTCTAGACTGTG
ACAACACATTCGCACCAACACCATTAATTGCTACCGTAAAAACGGGCACA
GCAGTAGCAAACGAGCTAGGCTTGAGCATCTTTCATTGGGATGTATCGCA
GACATTTATACAGGGAGAGTTGGAAGAAGACATCTGTTTGCGTTTGGCCG
AAGGCCCGGCTCCACCTAATTTCCAAGAGGCAGTAAGGTTTGAACATAGT
AGTGTATATCATAATGCTATGACCACAGAATACCAAGATTTGATTCAAAC
AGGTACTTTTGATCAAGAAAACCCATTCAATAATAAAAAACCAACCAATT
CCATGTGGATACACATATGGAAAACAGACCCTAATTGCATAGTAACGGGT
GCAAAGGCTAGACTAGTAGCTCGTGGAGACAAGCAAGTTCAAGGTCTAGA
CTGTGACAACACATTCGCACCAACACCATTAATTGCTACCGTAAAAACGG
GCACAGCAGTAGCAAACGAGCTAGGCTTGAGCATCTTTCATTGGGATGTA
TCGCAGACATTTATACAGGGAGAGTTGGAAGAAGACATCTGTTTGCGTTT
GGCCGAAGGC
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