prot_H-paniculata_contig24372.6602.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig24372.6602.1
Unique Nameprot_H-paniculata_contig24372.6602.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length135
Homology
BLAST of mRNA_H-paniculata_contig24372.6602.1 vs. uniprot
Match: A0A5N6Q5V3_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6Q5V3_9ASTR)

HSP 1 Score: 85.5 bits (210), Expect = 9.600e-17
Identity = 49/133 (36.84%), Postives = 75/133 (56.39%), Query Frame = 0
Query:    3 PPNFQEAVRFEHSSVYHNAMTTEYQDLIQTGTFDQENPFNNKKPTNSMWIHIWKTDPNCIVTGAKARLVARGDKQVQGLDCDNTFAPTPLIATVKTGTAVANELGLSIFHWDVSQTFIQGELEEDICLRLAEG 135
            P  F +AV+ EH   +  AM  E Q L + GT+  E     K+  +S W++  K  PN  +   KARLVA+G  Q++G+D   TFAP   + TV+T  A+A +    I   DV+  F+ G+L+E+I +++ EG
Sbjct:  339 PKYFAQAVKNEH---WRQAMKDEIQALEENGTWSLEELPKGKRTIDSKWVYKIKYKPNGEIERYKARLVAKGYTQMEGIDYHETFAPVAKLVTVRTLLAIATKRSWLIHQLDVNNAFLHGDLDEEIYMKVPEG 468          
BLAST of mRNA_H-paniculata_contig24372.6602.1 vs. uniprot
Match: A0A8J4CGM5_9CHLO (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4CGM5_9CHLO)

HSP 1 Score: 79.7 bits (195), Expect = 3.770e-16
Identity = 46/126 (36.51%), Postives = 64/126 (50.79%), Query Frame = 0
Query:    3 PPNFQEAVRFEHSSVYHNAMTTEYQDLIQTGTFDQENPFNNKKPTNSMWIHIWKTDPNCIVTGAKARLVARGDKQVQGLDCDNTFAPTPLIATVKTGTAVANELGLSIFHWDVSQTFIQGELEEDI 128
            P  ++EA+    +  +  AM  E   L   GT+  E+P          W++  K D N  +   KAR VA+G KQ++G+D D  FAPT   ATV+   A A   G+ + H DV   F+ GELEE I
Sbjct:    2 PSTYEEAINSPEAVHWRQAMDEEIASLHAQGTWRLEHPPQGANVIPGKWVYKLKRDANGGIERYKARYVAKGYKQIEGVDFDEVFAPTGCHATVRAFLASAAAEGMEVHHVDVRTAFLHGELEEQI 127          
BLAST of mRNA_H-paniculata_contig24372.6602.1 vs. uniprot
Match: A0A5N6NCI1_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NCI1_9ASTR)

HSP 1 Score: 82.8 bits (203), Expect = 6.600e-16
Identity = 44/133 (33.08%), Postives = 68/133 (51.13%), Query Frame = 0
Query:    3 PPNFQEAVRFEHSSVYHNAMTTEYQDLIQTGTFDQENPFNNKKPTNSMWIHIWKTDPNCIVTGAKARLVARGDKQVQGLDCDNTFAPTPLIATVKTGTAVANELGLSIFHWDVSQTFIQGELEEDICLRLAEG 135
            P ++ EA+  + SS +HNAM  E + + +   ++     N  KP    W++  K DPN  V   KARLVA+G  Q +G+D   TF+P     +++   A+     L +   DV   F+ GEL ED+ +   EG
Sbjct:   36 PSSYNEAITSDQSSEWHNAMIDELESMDKNNVWELVELLNGAKPVGCKWVYKTKLDPNGNVERFKARLVAKGYTQKEGIDYQETFSPVSQKDSLRIVMALVAHFDLELHQMDVKTAFLNGELYEDVYMTQPEG 168          
BLAST of mRNA_H-paniculata_contig24372.6602.1 vs. uniprot
Match: A0A5N6MUX2_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6MUX2_9ASTR)

HSP 1 Score: 82.4 bits (202), Expect = 1.140e-15
Identity = 49/133 (36.84%), Postives = 75/133 (56.39%), Query Frame = 0
Query:    3 PPNFQEAVRFEHSSVYHNAMTTEYQDLIQTGTFDQENPFNNKKPTNSMWIHIWKTDPNCIVTGAKARLVARGDKQVQGLDCDNTFAPTPLIATVKTGTAVANELGLSIFHWDVSQTFIQGELEEDICLRLAEG 135
            P  F +AV+   +S + +AM  E Q L +  T+  EN    K+  +S W++  K  PN  +   KARLVA+G  Q +G+D   TFAP   + TV+T  AVA + G  I   DV+  F+ G+L ED+ +++ +G
Sbjct:  258 PKFFHQAVQ---NSKWRDAMKKEIQALEKNETWTLENLPKGKRAIDSKWVYKIKYKPNGDIERYKARLVAKGFTQTEGIDYHETFAPVAKLVTVRTLLAVAVKKGWHIHQLDVNNAFLHGDLHEDVYMKIPQG 387          
BLAST of mRNA_H-paniculata_contig24372.6602.1 vs. uniprot
Match: A0A5N6LE47_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LE47_9ASTR)

HSP 1 Score: 82.0 bits (201), Expect = 1.570e-15
Identity = 48/133 (36.09%), Postives = 78/133 (58.65%), Query Frame = 0
Query:    3 PPNFQEAVRFEHSSVYHNAMTTEYQDLIQTGTFDQENPFNNKKPTNSMWIHIWKTDPNCIVTGAKARLVARGDKQVQGLDCDNTFAPTPLIATVKTGTAVANELGLSIFHWDVSQTFIQGELEEDICLRLAEG 135
            P +F+EA + +    + +AM  E + L Q GT+  E   N KK  +S W++  K  PN  V   KARLVA+G  Q++G+D  +TFAP   + T++   +VA + G  I   DV+  F+ G+LEE++ +++ +G
Sbjct:  328 PKSFKEASQDDR---WKDAMQKEIKALEQNGTWTLEELPNGKKAIDSKWVYKIKHKPNGEVERYKARLVAKGFTQLEGVDYHDTFAPVAKLVTMRALLSVAVKRGWHIHQLDVNNAFLHGDLEEEVYMKVPQG 457          
BLAST of mRNA_H-paniculata_contig24372.6602.1 vs. uniprot
Match: A0A1Y1L0U6_PHOPY (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1L0U6_PHOPY)

HSP 1 Score: 77.8 bits (190), Expect = 2.670e-15
Identity = 48/134 (35.82%), Postives = 69/134 (51.49%), Query Frame = 0
Query:    2 APPNFQEAVRFEHSSVYHNAMTTEYQDLIQTGTFDQENPFNNKKPTNSMWIHIWKTDPNCIVTGAKARLVARGDKQVQGLDCDNTFAPTPLIATVKTGTAVANELGLSIFHWDVSQTFIQGELEEDICLRLAEG 135
            AP ++ EA+R  +S  +  AM  E Q L +   +  +     KK   S W++  KT     +   KARLVA+G  Q  G+D   TF+P     T++T   VA    L +  +DVS TF+ G+LEE+I L   EG
Sbjct:   18 APQSYAEAMRSSNSEEWTKAMAEEIQALNKNQVWTLQVLPEGKKAIQSRWVYKIKTKTGDTIERFKARLVAKGCSQKHGIDIQETFSPVARYETIRTVLGVAAAEKLHLTQFDVSTTFLYGDLEEEIFLSQPEG 151          
BLAST of mRNA_H-paniculata_contig24372.6602.1 vs. uniprot
Match: A0A5K1CEX2_9MAGN (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K1CEX2_9MAGN)

HSP 1 Score: 80.5 bits (197), Expect = 3.670e-15
Identity = 48/133 (36.09%), Postives = 73/133 (54.89%), Query Frame = 0
Query:    3 PPNFQEAVRFEHSSVYHNAMTTEYQDLIQTGTFDQENPFNNKKPTNSMWIHIWKTDPNCIVTGAKARLVARGDKQVQGLDCDNTFAPTPLIATVKTGTAVANELGLSIFHWDVSQTFIQGELEEDICLRLAEG 135
            P ++ EAV+++H   + NAM  E Q L Q  T+       +KKP    W++  K   +  +   KARLVA+G  Q++GLD   TFA    + T++T  A+A+  G  ++  DVS  FI GEL E+I + +  G
Sbjct:  115 PSSYAEAVKYQH---WRNAMADEIQALEQNSTWSITTLPPHKKPIGCRWVYKIKRRSDGSIERYKARLVAKGYTQLEGLDYHETFALVAKLTTMRTLLALASIQGWHLYQMDVSNAFIHGELHEEIYMTIPPG 244          
BLAST of mRNA_H-paniculata_contig24372.6602.1 vs. uniprot
Match: A0A251U285_HELAN (Putative reverse transcriptase, RNA-dependent DNA polymerase n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251U285_HELAN)

HSP 1 Score: 76.6 bits (187), Expect = 4.170e-15
Identity = 42/133 (31.58%), Postives = 68/133 (51.13%), Query Frame = 0
Query:    3 PPNFQEAVRFEHSSVYHNAMTTEYQDLIQTGTFDQENPFNNKKPTNSMWIHIWKTDPNCIVTGAKARLVARGDKQVQGLDCDNTFAPTPLIATVKTGTAVANELGLSIFHWDVSQTFIQGELEEDICLRLAEG 135
            P ++ EA+  + SS ++ AM  E + + +   +D     N  KP    W+   K DPN  V   KARLVA+G  Q +G+D   TF+P     +++   A+     L +   DV   F+ G+L+ED+ ++  EG
Sbjct:    9 PISYNEAISSDQSSEWNKAMIDELESMKKNDVWDLVELPNGVKPVGCKWVFKTKLDPNGNVERYKARLVAKGYTQKEGIDYQETFSPVSRKDSLRIVMALVAHFDLELHQMDVKTAFLNGDLDEDVYMKQPEG 141          
BLAST of mRNA_H-paniculata_contig24372.6602.1 vs. uniprot
Match: Q43491_HORVU (DNA sequence with open reading frame n=1 Tax=Hordeum vulgare TaxID=4513 RepID=Q43491_HORVU)

HSP 1 Score: 75.9 bits (185), Expect = 8.880e-15
Identity = 42/133 (31.58%), Postives = 73/133 (54.89%), Query Frame = 0
Query:    3 PPNFQEAVRFEHSSVYHNAMTTEYQDLIQTGTFDQENPFNNKKPTNSMWIHIWKTDPNCIVTGAKARLVARGDKQVQGLDCDNTFAPTPLIATVKTGTAVANELGLSIFHWDVSQTFIQGELEEDICLRLAEG 135
            P N++EA+    S+ +  AM +E   + +   +   +  ++++   + WI   KTD N  VT  KARLVA+G +Q+QG+D + TF+P   + +V+   A+A      I+  DV   F+ G L+E++ +   EG
Sbjct:   11 PSNYEEAMAGPDSNEWLEAMKSEIGSMYENKVWTLVDLLDDRRAIENKWIFKKKTDANDNVTVYKARLVAKGFRQIQGVDYEETFSPVVKLKSVRIMLAIATFYDYEIWQMDVKTAFLNGNLKEELYMMQPEG 143          
BLAST of mRNA_H-paniculata_contig24372.6602.1 vs. uniprot
Match: A0A8J4BZC1_9CHLO (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4BZC1_9CHLO)

HSP 1 Score: 79.7 bits (195), Expect = 1.020e-14
Identity = 46/126 (36.51%), Postives = 64/126 (50.79%), Query Frame = 0
Query:    3 PPNFQEAVRFEHSSVYHNAMTTEYQDLIQTGTFDQENPFNNKKPTNSMWIHIWKTDPNCIVTGAKARLVARGDKQVQGLDCDNTFAPTPLIATVKTGTAVANELGLSIFHWDVSQTFIQGELEEDI 128
            P  ++EA+    +  +  AM  E   L   GT+  E+P          W++  K D N  +   KAR VA+G KQ++G+D D  FAPT   ATV+   A A   G+ + H DV   F+ GELEE I
Sbjct:  597 PSTYEEAINSPEAVHWRQAMDEEIASLHAQGTWRLEHPPQGANVIPGKWVYKLKRDANGGIERYKARYVAKGYKQIEGVDFDEVFAPTGCHATVRAFLASAAAEGMEVHHVDVRTAFLHGELEEQI 722          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24372.6602.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5N6Q5V3_9ASTR9.600e-1736.84Integrase catalytic domain-containing protein n=1 ... [more]
A0A8J4CGM5_9CHLO3.770e-1636.51Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5N6NCI1_9ASTR6.600e-1633.08Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5N6MUX2_9ASTR1.140e-1536.84Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5N6LE47_9ASTR1.570e-1536.09Integrase catalytic domain-containing protein n=1 ... [more]
A0A1Y1L0U6_PHOPY2.670e-1535.82Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5K1CEX2_9MAGN3.670e-1536.09Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A251U285_HELAN4.170e-1531.58Putative reverse transcriptase, RNA-dependent DNA ... [more]
Q43491_HORVU8.880e-1531.58DNA sequence with open reading frame n=1 Tax=Horde... [more]
A0A8J4BZC1_9CHLO1.020e-1436.51Integrase catalytic domain-containing protein (Fra... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 42..130
e-value: 5.3E-14
score: 52.4

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24372contigH-paniculata_contig24372:1562..1966 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24372.6602.1mRNA_H-paniculata_contig24372.6602.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig24372 1562..1966 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig24372.6602.1 ID=prot_H-paniculata_contig24372.6602.1|Name=mRNA_H-paniculata_contig24372.6602.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=135bp
PAPPNFQEAVRFEHSSVYHNAMTTEYQDLIQTGTFDQENPFNNKKPTNSM
WIHIWKTDPNCIVTGAKARLVARGDKQVQGLDCDNTFAPTPLIATVKTGT
AVANELGLSIFHWDVSQTFIQGELEEDICLRLAEG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2