prot_H-paniculata_contig24352.6596.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig24352.6596.1
Unique Nameprot_H-paniculata_contig24352.6596.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length267
Homology
BLAST of mRNA_H-paniculata_contig24352.6596.1 vs. uniprot
Match: D7FHZ3_ECTSI (DNA-directed RNA polymerase subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHZ3_ECTSI)

HSP 1 Score: 531 bits (1369), Expect = 1.630e-177
Identity = 261/267 (97.75%), Postives = 263/267 (98.50%), Query Frame = 0
Query:    1 GKKRLDLAGALLAGLFRQLFRKLTQNVRKYLQLCLDKSTQFVVGTAIKSQFITDGLKYSLATGNWGDKKDATKAGVSQVLNRLTYASALSHLRRLNTPLGREGKQAKPRQLHNTHWGFICPAETPEGQAVGLVKNLALMAYISVGCSLSPILEFLEEWAMENLDEIAPHMIAQTSCTKVFVNGNWVGVHRDPNRLVQTLVHQRRALDIDVEVSVVRDIKGRELRLYTDAGRVCRPLFVVEQNRLCVRKKHINDLHDPNYGWTNLMQQ 267
            GKKRLDLAGALLAGLFRQLFRKLTQNVRKYLQLCLDK TQFVVGTAIKSQFITDGLKYSLATGNWGDKK ATKAGVSQVLNRLTYASALSHLRRLNTPLGREGKQAKPRQLHNTHWGFICPAETPEGQAVGLVKNLALMAYISVGCSLSPILEFLEEWAMENLDEIAPHMIAQT+CTKVFVNGNWVGVHRDPNRLVQTLVHQRRALDIDVEVSVVRDIKGRELRLYTDAGRVCRPLFVVE NRL +RKKHINDLHDPNYGWTNLMQQ
Sbjct:  482 GKKRLDLAGALLAGLFRQLFRKLTQNVRKYLQLCLDKGTQFVVGTAIKSQFITDGLKYSLATGNWGDKKTATKAGVSQVLNRLTYASALSHLRRLNTPLGREGKQAKPRQLHNTHWGFICPAETPEGQAVGLVKNLALMAYISVGCSLSPILEFLEEWAMENLDEIAPHMIAQTNCTKVFVNGNWVGVHRDPNRLVQTLVHQRRALDIDVEVSVVRDIKGRELRLYTDAGRVCRPLFVVENNRLRIRKKHINDLHDPNYGWTNLMQQ 748          
BLAST of mRNA_H-paniculata_contig24352.6596.1 vs. uniprot
Match: A0A835YQ41_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ41_9STRA)

HSP 1 Score: 412 bits (1060), Expect = 1.110e-132
Identity = 203/268 (75.75%), Postives = 226/268 (84.33%), Query Frame = 0
Query:    1 GKKRLDLAGALLAGLFRQLFRKLTQNVRKYLQLCLDKSTQFVVGTAIKSQFITDGLKYSLATGNWGDKKDATKAGVSQVLNRLTYASALSHLRRLNTPLGREGKQAKPRQLHNTHWGFICPAETPEGQAVGLVKNLALMAYISVGCSLSPILEFLEEWAMENLDEIAPHMIAQTSCTKVFVNGNWVGVHRDPNRLVQTLVHQRRALDIDVEVSVVRDIKGRELRLYTDAGRVCRPLFVVEQNRLCVRKKHINDL--HDPNYGWTNLMQ 266
            GKKRLDLAG L+AGLFR              Q CLD+   FV+G AIKS  IT+GL+YSLATGNWGD+K ATKAGVSQVLNRLTYASALSHLRRLNTPLGREGKQAKPRQLHNTHWG ICPAETPEGQAVGLVKNLALMAYISVGC+LSPILEFLEEWA ENL+EI+P  IA+  CTK+FVNGNW+G+HR+PN+LV+TLV QRR LDID EVSVVRDIK RELRLYTDAGR+CRPLFVV+ N+L +RK HI+DL  +   Y WT+LMQ
Sbjct:  393 GKKRLDLAGPLVAGLFRTXXXXXXXXXXXXXQKCLDEGRGFVLGVAIKSNTITNGLRYSLATGNWGDQKTATKAGVSQVLNRLTYASALSHLRRLNTPLGREGKQAKPRQLHNTHWGMICPAETPEGQAVGLVKNLALMAYISVGCALSPILEFLEEWATENLEEISPSTIAEKQCTKIFVNGNWIGIHREPNQLVRTLVIQRRCLDIDAEVSVVRDIKERELRLYTDAGRICRPLFVVQNNKLVIRKSHIHDLVSNPEEYNWTSLMQ 660          
BLAST of mRNA_H-paniculata_contig24352.6596.1 vs. uniprot
Match: A0A7S2AX64_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AX64_9STRA)

HSP 1 Score: 383 bits (983), Expect = 2.750e-125
Identity = 192/274 (70.07%), Postives = 223/274 (81.39%), Query Frame = 0
Query:    1 GKKRLDLAGALLAGLFRQLFRKLTQNVRKYLQLCLDKSTQFVVGTAIKSQFITDGLKYSLATGNWGDKKDATKAGVSQVLNRLTYASALSHLRRLNTPLGREGKQAKPRQLHNTHWGFICPAETPEGQAVGLVKNLALMAYISVGCSLSPILEFLEEWAMENLDEIAPHMIAQTSCTKVFVNGNWVGVHRDPNRLVQTLVHQRRALDIDVEVSVVRDIKGRELRLYTDAGRVCRPLFVVEQN-----RLCVRKKHINDL--HDPNYGWTNLMQQ 267
            GKKRLDLAG LLAGLFR LFRKLT++VRKYLQ CLD+   F V TAIKS+ ++DGLKYSLATGNWGD+++ ++AGVSQVLNRL YAS LSHLRRLNTPLGREGKQA PRQLHNTHWG +CPAETPEGQAVGLVKNLALMAYISVG + +PILEFL+EW+ME+L+EI P +I+    TK+ VNGNWVG+HRDP RL QT+   RR LD D EVSVVRDIK  ELR+YTDAGRVCRPLF+VE++     RL V+K H   L   +  Y W+NL  +
Sbjct:  394 GKKRLDLAGPLLAGLFRLLFRKLTKDVRKYLQRCLDERKPFNVTTAIKSRTLSDGLKYSLATGNWGDRRNPSRAGVSQVLNRLAYASTLSHLRRLNTPLGREGKQAGPRQLHNTHWGMVCPAETPEGQAVGLVKNLALMAYISVGSAQAPILEFLDEWSMEHLEEIQPAVISDPGTTKILVNGNWVGIHRDPERLCQTMRALRRRLDFDPEVSVVRDIKESELRIYTDAGRVCRPLFIVEKDDYGLQRLKVKKSHTRRLLSDEEKYRWSNLTME 667          
BLAST of mRNA_H-paniculata_contig24352.6596.1 vs. uniprot
Match: F0YIN3_AURAN (DNA-directed RNA polymerase subunit beta n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YIN3_AURAN)

HSP 1 Score: 392 bits (1006), Expect = 4.030e-125
Identity = 193/268 (72.01%), Postives = 221/268 (82.46%), Query Frame = 0
Query:    1 GKKRLDLAGALLAGLFRQLFRKLTQNVRKYLQLCLDKSTQFVVGTAIKSQFITDGLKYSLATGNWGDKKDATKAGVSQVLNRLTYASALSHLRRLNTPLGREGKQAKPRQLHNTHWGFICPAETPEGQAVGLVKNLALMAYISVGCSLSPILEFLEEWAMENLDEIAPHMIAQTSCTKVFVNGNWVGVHRDPNRLVQTLVHQRRALDIDVEVSVVRDIKGRELRLYTDAGRVCRPLFVVEQ---NRLCVRKKHINDLHDPNYGWTNLM 265
            GKKRLDLAG LL GLFR LFRKLT++V  YLQ C+D+   F + +AIKS+ ITDGL+YSLATGNWGD+KDA++AGVSQVLNRLTYAS LSHLRRLNTPLGREGKQAKPRQLHNTHWGFICPAETPEGQAVGLVKNLALM+Y+SVG   SPILEFLEEW+MENL+EI+P  IA    TK+FVNG+WVGVHRDP+ L  TL   RR +DID EVSVVRDIK +ELR+YTDAGRVCRPL ++ +     L +RK HI  L +   GWT L+
Sbjct:  340 GKKRLDLAGPLLGGLFRMLFRKLTKDVLAYLQKCIDEGRDFNLASAIKSRVITDGLRYSLATGNWGDRKDASRAGVSQVLNRLTYASTLSHLRRLNTPLGREGKQAKPRQLHNTHWGFICPAETPEGQAVGLVKNLALMSYVSVGSPQSPILEFLEEWSMENLEEISPQTIADPGTTKIFVNGSWVGVHRDPSTLESTLRSLRRQIDIDPEVSVVRDIKEKELRIYTDAGRVCRPLLIISKFSRQELRLRKSHIQKLVNGELGWTQLL 607          
BLAST of mRNA_H-paniculata_contig24352.6596.1 vs. uniprot
Match: A0A8J2SZW4_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SZW4_9STRA)

HSP 1 Score: 388 bits (997), Expect = 4.210e-123
Identity = 195/283 (68.90%), Postives = 224/283 (79.15%), Query Frame = 0
Query:    1 GKKRLDLAGALLAGLFRQLFRKLTQNVRKYLQLCLDKSTQFVVGTAIKSQFITDGLKYSLATGNWGDKKDATKAGVSQVLNRLTYASALSHLRRLNTPLGREGKQAKPRQLHNTHWGFICPAETPEGQAVGLVKNLALMAYISVGCSLSPILEFLEEWAMENLDEIAPHMIAQTSCTKVFVNGNWVGVHRDPNRLVQTLVHQRRALDIDVEVSVVRDIKGRELRLYTDAGRVCRPLFVVEQN------------------RLCVRKKHINDLHDPNYGWTNLM 265
            GKKRLDLAG LL GLFR LFRKLT++V  YLQ C+D++  F + +AIKS+ ITDGL+YSLATGNWGD+KDA++AGVSQVLNRLTYAS LSHLRRLNTPLGREGKQAKPRQLHNTHWGFICPAETPEGQAVGLVKNLALMAY+SVG   SPILEFLEEW+MENL+EI+P  IA    TK+FVNG+W+GVHRDP  L  TL   RR +DID EVSVVRDIK +ELR+YTDAGRVCRPL +VE +                  +L +RK HI+ L +   GWT L+
Sbjct:  436 GKKRLDLAGPLLGGLFRMLFRKLTKDVLAYLQKCIDEARDFNLASAIKSRLITDGLRYSLATGNWGDRKDASRAGVSQVLNRLTYASTLSHLRRLNTPLGREGKQAKPRQLHNTHWGFICPAETPEGQAVGLVKNLALMAYVSVGSPQSPILEFLEEWSMENLEEISPQTIADPGTTKIFVNGSWIGVHRDPCTLEATLRSLRRQIDIDPEVSVVRDIKEKELRVYTDAGRVCRPLLIVESDHASTWKDPLNHSSSSPAQKLKLRKPHIHKLVNGELGWTQLL 718          
BLAST of mRNA_H-paniculata_contig24352.6596.1 vs. uniprot
Match: A0A418ATP0_9STRA (DNA-directed RNA polymerase subunit beta n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A418ATP0_9STRA)

HSP 1 Score: 376 bits (965), Expect = 6.580e-123
Identity = 186/270 (68.89%), Postives = 222/270 (82.22%), Query Frame = 0
Query:    1 GKKRLDLAGALLAGLFRQLFRKLTQNVRKYLQLCLDKSTQFVVGTAIKSQFITDGLKYSLATGNWGDKKDATKAGVSQVLNRLTYASALSHLRRLNTPLGREGKQAKPRQLHNTHWGFICPAETPEGQAVGLVKNLALMAYISVGCSLSPILEFLEEWAMENLDEIAPHMIAQTSCTKVFVNGNWVGVHRDPNRLVQTLVHQRRALDIDVEVSVVRDIKGRELRLYTDAGRVCRPLFVVEQNRLCVRKKHINDLHD---PNYGWTNLMQQ 267
            G KRLDLAG LL GLFR LF+KLT++V+ YLQ C+D    F +  AIKS+ I++GL+YSLATGNWG +K A+KAGVSQVLNRLTYAS+LSHLRRLNTPLGREGKQAKPRQLHNTHWG ICPAETPEGQAVGLVKNLALMAYISVG   +PILEFLEEW+ ENL+EI   +I   + TK+FVNGNWVGVHR+PN LV+TL   RR +DID EVSV+RD+  +ELR+YTDAGRVCRPLF+VE NRL ++K+H+  L +    ++ W NL+ +
Sbjct:   43 GNKRLDLAGPLLGGLFRVLFKKLTKDVKGYLQKCVDAGRDFQLSLAIKSKTISNGLRYSLATGNWGMQKTASKAGVSQVLNRLTYASSLSHLRRLNTPLGREGKQAKPRQLHNTHWGMICPAETPEGQAVGLVKNLALMAYISVGSPQAPILEFLEEWSTENLEEITAQIIP--TATKIFVNGNWVGVHREPNELVKTLRSLRRCVDIDAEVSVIRDLMQKELRIYTDAGRVCRPLFIVENNRLLLQKQHVVKLQNHKHTHFRWQNLLTE 310          
BLAST of mRNA_H-paniculata_contig24352.6596.1 vs. uniprot
Match: F0YGN2_AURAN (DNA-directed RNA polymerase subunit beta n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YGN2_AURAN)

HSP 1 Score: 387 bits (995), Expect = 6.910e-123
Identity = 193/279 (69.18%), Postives = 221/279 (79.21%), Query Frame = 0
Query:    1 GKKRLDLAGALLAGLFRQLFRKLTQNVRKYLQLCLDKSTQFVVGTAIKSQFITDGLKYSLATGNWGDKKDATKAGVSQVLNRLTYASALSHLRRLNTPLGREGKQAKPRQLHNTHWGFICPAETPEGQAVGLVKNLALMAYISVGCSLSPILEFLEEWAMENLDEIAPHMIAQTSCTKVFVNGNWVGVHRDPNRLVQTLVHQRRALDIDVEVSVVRDIKGRELRLYTDAGRVCRPLFVVEQ--------------NRLCVRKKHINDLHDPNYGWTNLM 265
            GKKRLDLAG LL GLFR LFRKLT++V  YLQ C+D    F + +AIKS+ +TDGL+YSLATGNWGD+KDA++AGVSQVLNRLTYAS LSHLRRLNTPLGREGKQAKPRQLHNTHWGFICPAETPEGQAVGLVKNLALM+Y+SVG   SPILEFLEEW+MENL+EI+P  IA    TK+FVNG+WVGVHRDP+ L  TL   RR +DID EVSVVRDIK +ELR+YTDAGRVCRPL +VE                 L +RK H+  L + + GWT L+
Sbjct:  437 GKKRLDLAGPLLGGLFRMLFRKLTKDVLAYLQKCIDDGRDFNLASAIKSRVVTDGLRYSLATGNWGDRKDASRAGVSQVLNRLTYASTLSHLRRLNTPLGREGKQAKPRQLHNTHWGFICPAETPEGQAVGLVKNLALMSYVSVGSPQSPILEFLEEWSMENLEEISPQTIADPGTTKIFVNGSWVGVHRDPSTLESTLRSLRRQIDIDPEVSVVRDIKEKELRVYTDAGRVCRPLLIVEAASTVTRVRSQEATFQELRLRKSHVQKLVNGDLGWTQLL 715          
BLAST of mRNA_H-paniculata_contig24352.6596.1 vs. uniprot
Match: A0A7S2F9I8_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F9I8_9STRA)

HSP 1 Score: 383 bits (983), Expect = 1.850e-122
Identity = 192/274 (70.07%), Postives = 223/274 (81.39%), Query Frame = 0
Query:    1 GKKRLDLAGALLAGLFRQLFRKLTQNVRKYLQLCLDKSTQFVVGTAIKSQFITDGLKYSLATGNWGDKKDATKAGVSQVLNRLTYASALSHLRRLNTPLGREGKQAKPRQLHNTHWGFICPAETPEGQAVGLVKNLALMAYISVGCSLSPILEFLEEWAMENLDEIAPHMIAQTSCTKVFVNGNWVGVHRDPNRLVQTLVHQRRALDIDVEVSVVRDIKGRELRLYTDAGRVCRPLFVVEQN-----RLCVRKKHINDL--HDPNYGWTNLMQQ 267
            GKKRLDLAG LLAGLFR LFRKLT++VRKYLQ CLD+   F V TAIKS+ ++DGLKYSLATGNWGD+++ ++AGVSQVLNRL YAS LSHLRRLNTPLGREGKQA PRQLHNTHWG +CPAETPEGQAVGLVKNLALMAYISVG + +PILEFL+EW+ME+L+EI P +I+    TK+ VNGNWVG+HRDP RL QT+   RR LD D EVSVVRDIK  ELR+YTDAGRVCRPLF+VE++     RL V+K H   L   +  Y W+NL  +
Sbjct:  252 GKKRLDLAGPLLAGLFRLLFRKLTKDVRKYLQRCLDERKPFNVTTAIKSRTLSDGLKYSLATGNWGDRRNPSRAGVSQVLNRLAYASTLSHLRRLNTPLGREGKQAGPRQLHNTHWGMVCPAETPEGQAVGLVKNLALMAYISVGSAQAPILEFLDEWSMEHLEEIQPAVISDPGTTKILVNGNWVGIHRDPERLCQTMRALRRRLDFDPEVSVVRDIKESELRIYTDAGRVCRPLFIVEKDDYGLQRLKVKKSHTRRLLSDEEKYRWSNLTME 525          
BLAST of mRNA_H-paniculata_contig24352.6596.1 vs. uniprot
Match: A0A6A4ZKU8_9STRA (DNA-directed RNA polymerase (Fragment) n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZKU8_9STRA)

HSP 1 Score: 375 bits (964), Expect = 1.560e-121
Identity = 186/270 (68.89%), Postives = 221/270 (81.85%), Query Frame = 0
Query:    1 GKKRLDLAGALLAGLFRQLFRKLTQNVRKYLQLCLDKSTQFVVGTAIKSQFITDGLKYSLATGNWGDKKDATKAGVSQVLNRLTYASALSHLRRLNTPLGREGKQAKPRQLHNTHWGFICPAETPEGQAVGLVKNLALMAYISVGCSLSPILEFLEEWAMENLDEIAPHMIAQTSCTKVFVNGNWVGVHRDPNRLVQTLVHQRRALDIDVEVSVVRDIKGRELRLYTDAGRVCRPLFVVEQNRLCVRKKHINDLHD---PNYGWTNLMQQ 267
            G KRLDLAG LL GLFR LF+KLT++V+ YLQ C+D    F +  AIKS+ I++GL+YSLATGNWG +K A+KAGVSQVLNRLTYAS+LSHLRRLNTPLGREGKQAKPRQLHNTHWG ICPAETPEGQAVGLVKNLALMAYISVG   +PILEFLEEW+ ENL+EI   +I   + TK+FVNGNWVGVHR+PN LV+TL   RR +DID EVSV+RD+  +ELR+YTDAGRVCRPLF+VE NRL ++K+H+  L +     + W NL+ +
Sbjct:  344 GNKRLDLAGPLLGGLFRVLFKKLTKDVKGYLQKCVDAGRDFQLSLAIKSKTISNGLRYSLATGNWGMQKTASKAGVSQVLNRLTYASSLSHLRRLNTPLGREGKQAKPRQLHNTHWGMICPAETPEGQAVGLVKNLALMAYISVGSPQAPILEFLEEWSTENLEEITAQIIP--TATKIFVNGNWVGVHREPNELVKTLRSLRRCVDIDAEVSVIRDLMQKELRIYTDAGRVCRPLFIVENNRLLLQKQHVVKLQNHKHTQFRWQNLLTE 611          
BLAST of mRNA_H-paniculata_contig24352.6596.1 vs. uniprot
Match: A0A425D5T0_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A425D5T0_9STRA)

HSP 1 Score: 375 bits (964), Expect = 1.200e-120
Identity = 186/270 (68.89%), Postives = 221/270 (81.85%), Query Frame = 0
Query:    1 GKKRLDLAGALLAGLFRQLFRKLTQNVRKYLQLCLDKSTQFVVGTAIKSQFITDGLKYSLATGNWGDKKDATKAGVSQVLNRLTYASALSHLRRLNTPLGREGKQAKPRQLHNTHWGFICPAETPEGQAVGLVKNLALMAYISVGCSLSPILEFLEEWAMENLDEIAPHMIAQTSCTKVFVNGNWVGVHRDPNRLVQTLVHQRRALDIDVEVSVVRDIKGRELRLYTDAGRVCRPLFVVEQNRLCVRKKHINDLHD---PNYGWTNLMQQ 267
            G KRLDLAG LL GLFR LF+KLT++V+ YLQ C+D    F +  AIKS+ I++GL+YSLATGNWG +K A+KAGVSQVLNRLTYAS+LSHLRRLNTPLGREGKQAKPRQLHNTHWG ICPAETPEGQAVGLVKNLALMAYISVG   +PILEFLEEW+ ENL+EI   +I   + TK+FVNGNWVGVHR+PN LV+TL   RR +DID EVSV+RD+  +ELR+YTDAGRVCRPLF+VE NRL ++K+H+  L +     + W NL+ +
Sbjct:  394 GNKRLDLAGPLLGGLFRVLFKKLTKDVKGYLQKCVDAGRDFQLSLAIKSKTISNGLRYSLATGNWGMQKTASKAGVSQVLNRLTYASSLSHLRRLNTPLGREGKQAKPRQLHNTHWGMICPAETPEGQAVGLVKNLALMAYISVGSPQAPILEFLEEWSTENLEEITAQIIP--TATKIFVNGNWVGVHREPNELVKTLRSLRRCVDIDAEVSVIRDLMQKELRIYTDAGRVCRPLFIVENNRLLLQKQHVVKLQNHKHTQFRWQNLLTE 661          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24352.6596.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHZ3_ECTSI1.630e-17797.75DNA-directed RNA polymerase subunit beta n=1 Tax=E... [more]
A0A835YQ41_9STRA1.110e-13275.75DNA-directed RNA polymerase subunit beta n=1 Tax=T... [more]
A0A7S2AX64_9STRA2.750e-12570.07DNA-directed RNA polymerase (Fragment) n=1 Tax=Dic... [more]
F0YIN3_AURAN4.030e-12572.01DNA-directed RNA polymerase subunit beta n=1 Tax=A... [more]
A0A8J2SZW4_9STRA4.210e-12368.90DNA-directed RNA polymerase subunit beta n=1 Tax=P... [more]
A0A418ATP0_9STRA6.580e-12368.89DNA-directed RNA polymerase subunit beta n=2 Tax=A... [more]
F0YGN2_AURAN6.910e-12369.18DNA-directed RNA polymerase subunit beta n=1 Tax=A... [more]
A0A7S2F9I8_9STRA1.850e-12270.07DNA-directed RNA polymerase subunit beta n=1 Tax=D... [more]
A0A6A4ZKU8_9STRA1.560e-12168.89DNA-directed RNA polymerase (Fragment) n=3 Tax=Aph... [more]
A0A425D5T0_9STRA1.200e-12068.89DNA-directed RNA polymerase subunit beta n=1 Tax=A... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.90.1100.10coord: 1..210
e-value: 1.8E-48
score: 167.3
NoneNo IPR availablePANTHERPTHR20856:SF23coord: 2..255
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 22..267
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..6
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 17..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 7..16
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 1..265
IPR007645RNA polymerase Rpb2, domain 3PFAMPF04565RNA_pol_Rpb2_3coord: 78..142
e-value: 5.3E-27
score: 93.8
IPR007646RNA polymerase Rpb2, domain 4PFAMPF04566RNA_pol_Rpb2_4coord: 179..240
e-value: 6.6E-23
score: 80.8
IPR015712DNA-directed RNA polymerase, subunit 2PANTHERPTHR20856DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2coord: 2..255

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24352contigH-paniculata_contig24352:739..3625 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24352.6596.1mRNA_H-paniculata_contig24352.6596.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig24352 739..3625 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig24352.6596.1 ID=prot_H-paniculata_contig24352.6596.1|Name=mRNA_H-paniculata_contig24352.6596.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=267bp
GKKRLDLAGALLAGLFRQLFRKLTQNVRKYLQLCLDKSTQFVVGTAIKSQ
FITDGLKYSLATGNWGDKKDATKAGVSQVLNRLTYASALSHLRRLNTPLG
REGKQAKPRQLHNTHWGFICPAETPEGQAVGLVKNLALMAYISVGCSLSP
ILEFLEEWAMENLDEIAPHMIAQTSCTKVFVNGNWVGVHRDPNRLVQTLV
HQRRALDIDVEVSVVRDIKGRELRLYTDAGRVCRPLFVVEQNRLCVRKKH
INDLHDPNYGWTNLMQQ
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007645RNA_pol_Rpb2_3
IPR007646RNA_pol_Rpb2_4
IPR015712DNA-dir_RNA_pol_su2