mRNA_H-paniculata_contig2425.6566.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2425.6566.1
Unique NamemRNA_H-paniculata_contig2425.6566.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig2425.6566.1 vs. uniprot
Match: A0A6H5L5H7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5H7_9PHAE)

HSP 1 Score: 375 bits (964), Expect = 1.230e-116
Identity = 195/404 (48.27%), Postives = 260/404 (64.36%), Query Frame = 1
Query:    1 SPTLFNVFINDILDGAQQFGVGIVGTKT----RFPGLLFADDLVCMTPNRRKLVKMNNHLTDWMHDNEMQAGIQKCGVMAIKGFATNRLRREAERWQLGGEQLPIVEEYQYLGINFTRDLKVTSMMAGRLEGAKKLVNKITPFLRNTSIPVPLKVSVVRAIVVPKMLYGAEIYGMNKKITSQMQQYLTETCRLVIGMSAKNPVSNVSLWRELRMPPICASAAARRARAVSKCEDLATYAKEVTLTKYTSRKWTWFTGAIKWVNRYIKPLAK-----LHPRVTKPEGYEDGWREVDPQSLAKYIKKLIWLREEKVYESKTSKRYIESRFETHSLARVRGSGLPLMGKGLSTLIRVRLGGFWTLRKFAVCDMIDEKYKTYCPFCKVGTGETTAHILLECSRWAMGR 1185
            SP LFN+FINDILDGA+  GV  VG +     R PGLLFADDLV ++P R KL  M++H++ WM +NEM AGI KCGVMAI G    RLR   +RW+L GE LPIVE Y YLG+ F R L V  MM  +L   +KLV  +TP+L    IPVPLKV+VVR +++P++L+GAE++GM   IT+++Q Y+    R+V GMS K  VS+V+LWREL +PPICASAAARRAR + K   L T+   +    Y  RKWTW TG  +W+NRY   LAK     L  ++ +P     GW +++PQ L++ I  ++W REE+V  SKT+  Y +  FET+ LA  R +G   + +GL+ +IR R+GGFW   + +   MI  +YK  CP CK    E  AH+L +C  W+  R
Sbjct:  717 SPVLFNIFINDILDGAESLGVPEVGNQLERAPRIPGLLFADDLVTISPTRAKLAAMDDHISVWMAENEMSAGIHKCGVMAI-GHGRRRLRERPDRWKLAGETLPIVESYTYLGLEFNRRLDVEVMMGNKLAAGEKLVTLMTPYLLCRQIPVPLKVAVVRGVILPRLLFGAEVFGMRTSITNRLQVYVNRAYRMVAGMSPKATVSSVALWRELEIPPICASAAARRARTMQKASKLKTWIASIMAQPYKHRKWTWGTGTGRWMNRYSHRLAKATSDDLPAKMRRP----GGWIKMNPQELSRCITAVVWEREERVAWSKTADDYKQMHFETNPLAAARAAGHATLEEGLALIIRCRVGGFWGAGRLSRRGMIHPRYKRMCPCCKRRVEEDLAHVLFDCPTWSEAR 1115          
BLAST of mRNA_H-paniculata_contig2425.6566.1 vs. uniprot
Match: A0A7S1SJ55_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SJ55_9CHLO)

HSP 1 Score: 226 bits (575), Expect = 3.950e-62
Identity = 140/415 (33.73%), Postives = 215/415 (51.81%), Query Frame = 1
Query:    1 SPTLFNVFINDILDGAQQFGVGIVGT--------KTRFPGLLFADDLVCMTPNRRKLVKMNNHLTDWMHDNEMQAGIQKCGVMAIKGFA-TNRLRREAERWQLGGEQLPIVEEYQYLGINFTRDLKVTSMMAGRLEGAKKLVNKITPFLRNTSIPVPLKVSVVRAIVVPKMLYGAEIYGMNKKI-TSQMQQYLTETCRLVIGMSAKNP-VSNVSLWRELRMPPICASAAARRARAVSKCEDLATYAKEVTLTKYTSRKWTWFTGAIKWVNRYIKPLAKLHPRVTKPEGYEDGWREVDPQSLAKYIKKLIWLREEKVYESKTSKRYIESRFETHSLARVRGSGLPLMGKG--------LSTLIRVRLGGFWTLRKFAVCDMIDEKYKTYCPFCKVGTGETTAHILLECSRWAMGRQ 1188
            SP LFN+FINDI DG +  G  + G           R PG LFADD V + P+   L  M  H + W  D+ M  G++KCGVMA+   +    LR +A+RWQLGGE++P+V EY+YLG     DL + +++  R+  +++ V  +   L    IP+ ++ SV++  ++P + YG E++GM+     +++Q  L +  R ++G+ AK P V+   L REL + PI A AAA R RA  K   L T   ++       R  TW +G ++W++R+ +  A+L   V  P      WR + P+  +  +K  +W R E      TS     + +  +S A   G+ LP  G G        L  +I++R   F T R+ A    + E++  +CP C     E+  HILLEC RW   R+
Sbjct:  615 SPILFNIFINDIFDGIEGLGCEVPGCVDMLDSRQPLRVPGQLFADDTVGLAPSLDNLHAMFAHFSQWAEDHYMGFGVKKCGVMALGRHSDVVALREQADRWQLGGERVPVVSEYRYLGALINSDLSMRNIVGDRVNKSRRAVEALDSVLGGRDIPINVRTSVLKTCILPVLTYGCEVWGMDSTSGVNRLQTILNQCLRRLVGVGAKAPGVATAPLLRELGIAPIEAMAAAARTRAFLKAPTLNTCISDLVRQPSRMRPNTWTSGTVRWLDRFARASAELAQNVRVPP----AWRSLQPRVASNLVKAAVWGRFE------TSSSACTNTWSIYSQASYVGNPLPQYGTGIPAGAVAGLHIMIQLRTRVFPTARRLARIHAMPERFLHHCPACGGDVIESIEHILLECPRWEYHRR 1019          
BLAST of mRNA_H-paniculata_contig2425.6566.1 vs. uniprot
Match: A0A2R5FKX6_9STRA (Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fragment) n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5FKX6_9STRA)

HSP 1 Score: 209 bits (532), Expect = 8.640e-58
Identity = 150/535 (28.04%), Postives = 222/535 (41.50%), Query Frame = 1
Query:    1 SPTLFNVFINDILDGAQQFGV-------GIVGTKTRFPGLLFADDLVCMTPNRRKLVKMNNHLTDWMHDNEMQAGIQKCGVMA---IKGFATNRLRREAERWQLGGEQLPIVEEYQYLGINFTRDLKVTSMMAGRLEGAKKLVNKITPFLRNTSIPVPLKVSVVRAIVVPKMLYGAEIYGMNKKITSQMQQYLTETCRLVIGMSAKNPVSNVSLWRELRMPPICASAAARRARAVSKC-EDLATYAKEVTLTKYTSRKWTWFTGAIKWVNRYIKPLAKL---HPRVTKPEGYED----------------------------------------------------------------------------------------------------------------------------GWREVD-PQSLAKYIKKLIWLREEKVY-ESKTSKRYIESRFETHSLARVRGSGLPLMGKGLSTLIRVRLGGFWTLRKFAVCDMIDEKYKTYCPFCKVGTGETTAHILLECSRWAMGR 1185
            SPTLFNVFINDI DG +  GV       G  G   R PGLLFADDLV    +   +      L  W++DNE+Q G  KCG +    + GF             L G  +PIVE Y YLG+    DL     +A RL  A++L   +  FLR   +P+  + +V R +++P + YGAEI+  NK  T   QQ++    +L+ G++    VSNV+LW E  +PP+CA+A  +RAR +SK   +L T+  ++    Y +R+ TW T A +W+N +   L +       V +  G E+                                                                                                                            GW  V+ P+ L++ ++ ++W+RE++ Y ++K  +RY+  RFE   L R     +P   +G+ST++R+R+G F T  + A   +   +YK  CP C     ET  HI L C RWA  R
Sbjct:   96 SPTLFNVFINDIFDGHEDLGVLARYHWRGTDGL--RIPGLLFADDLVSFIEDAAGIRPAVERLETWLNDNELQVGHHKCGFLKMGRVPGF-----EEAVAAAPLQGAAVPIVESYTYLGLEIRPDLSRQGTIADRLAKARRLAGSMHSFLRRQDVPIQFRTAVARTVLIPAITYGAEIFAFNKSFTRGAQQFINTQLKLIAGVARGQAVSNVALWHEFGVPPLCATANGQRARLLSKGGRELRTWLAKMVERGYKARRTTWITNARRWLNTHTHRLLRTMLTRESVLEMTGEENLDAFFNLYAAGGDDXXXXXXXXXXXXXXNNAQGPLQLHIEGMAAVFVMMGAGNEAXXXXXXXXXXXXXXXXXXXXXXAPADEAAQDHAXXXDAAELDEARRNDNERRLIGPTMRKAMEFAIQPGGWEAVENPKVLSRLVRAVVWMREDRNYGDAKYGRRYLARRFEEQRLTRASLMAVPGAARGVSTMVRMRIGAFNTTERLARWGLRAARYKHECPCCHSQEPETIGHIFLRCPRWASKR 623          
BLAST of mRNA_H-paniculata_contig2425.6566.1 vs. uniprot
Match: A0A7S3PFX4_9STRA (Hypothetical protein n=2 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PFX4_9STRA)

HSP 1 Score: 176 bits (446), Expect = 1.120e-47
Identity = 92/275 (33.45%), Postives = 154/275 (56.00%), Query Frame = 1
Query:  361 MMAGRLEGAKKLVNKITPFLRNTSIPVPLKVSVVRAIVVPKMLYGAEIYGMNKKITSQMQQYLTETCRLVIGMSAKNPVSNVSLWRELRMPPICASAAARRARAVSKCEDLATYAKEVTLTKYTSRKWTWFTGAIKWVNRYIKPLAKLHPRVTKPEGY--EDGWREVDPQSLAKYIKKLIWLREE--KVYESKTSKRYIESRFETHSLARVRGSGLPLMGKGLSTLIRVRLGGFWTLRKFAVCDMIDEKYKTYCPFCKVGTGETTAHILLECSRW 1173
            M +  L+  ++    I PFL    IP+ ++  ++ ++++ ++LYGAEIYGMNK +T   QQ L E+ ++++G+S K PVS + LW E  +PPI A AA+RRAR   K ++L T    +  + Y S +WTW +G ++W+   I    +   R   P     +DGW  + P+ +A+ + +L+W RE+  K   + T  +Y+ S F  + L  +    +P++ +GLS ++R R G  W   K A+   I  +Y+T CP C     E   H++L C++W
Sbjct:    1 MASACLKKGRQTQAAIRPFLGCLDIPLCIRRQILCSVMLSRLLYGAEIYGMNKSLTRHFQQLLDESLKIMLGVSPKMPVSKLVLWEEFGIPPIAALAASRRARVFQKAQNLRTKITTLIQSPYRSLQWTWISGTMRWLRTQI---GRHRRRAGMPHLVFDDDGWERLPPKQMAQSLIQLVWAREKVLKANVNPTFTKYVGSAFVKNRLTSMTTGSVPMLNQGLSLIVRARAGAIWWAFKLALTRKIHARYRTACPCCGASEPENLDHVMLRCAKW 272          
BLAST of mRNA_H-paniculata_contig2425.6566.1 vs. uniprot
Match: A0A1R0GP03_9FUNG (RNA-directed DNA polymerase from mobile element jockey n=1 Tax=Smittium mucronatum TaxID=133383 RepID=A0A1R0GP03_9FUNG)

HSP 1 Score: 179 bits (455), Expect = 5.380e-46
Identity = 126/401 (31.42%), Postives = 194/401 (48.38%), Query Frame = 1
Query:    1 SPTLFNVFINDILDGAQQFGVGIVGTKTRFPGLLFADDLVCMTPNRRKLVKMNNHLTDWMHDNEMQAGIQKCGVMAIKGFATNRLRREAERWQLGGEQLPIVEEYQYLGINFTRDLKVTSMMAGRLEGAKKLVNKITPFLRNTSIPVPLKVSVVRAIVVPKMLYGAEIYGMNKKITSQMQQYLTETCRLVIGMSAKNPVSNVSLWRELRMPPICASAAARRARAVSKCEDLATYAKEVTLTKYTSRKWTWFTGAIKWVNRYIKPLAKLHPRVTKPEGYEDGWREVDPQSLAKYIKKLIWLREEKVYESKTSKRYIESRFETHSLARVRG-SGLPLM----GKGLSTLIRVRLGGFWTLRKFAVCDMIDEKYKTYCPFCKVGTGETTAHILLECSRWAMGRQ 1188
            SP LF+++IND+ +  +   V  +G K +  GLLFADD V    +  KL      ++ W    EMQ    KCGVM I G  TN L      + + G  +P VE Y+YLG+ F       S++    E +++ +N +  FL N +IP+ L+ +++R++++P   YG E++GM+K  TS++Q  +    RLVIG S K  ++   L  EL++  +    A  R RA  K   L T+  ++      SR  TW +G  +W  R+    A                    P    KY+ +     E  V         I +  ++  + R+R  +GL L+     KG+  +I++R G F T  K A   +ID KY   CPFCK    E+  H++LECS+W   RQ
Sbjct:  567 SPILFDLYINDLFENIKGITVPEIGEKIK--GLLFADDAVVFADSPAKLQIAFEKVSQWAKKWEMQVNASKCGVMGI-GSQTNML------FTIQGGAVPQVEHYKYLGVMFNDKWNHRSVINNNSENSRRAMNGMYFFLGNKNIPIALRATLIRSVLIPIATYGGELFGMSKARTSKLQTVIDTASRLVIG-SGKT-IALHRLREELKLTTVYTKTAVARERAFYKWPTLKTWITDLIEYPMKSRLDTWVSGTRRWTKRFCDHSA--------------------PGETLKYLDRRTRANEYSV---------ISNWLKSSGIGRIRNVTGLELIFPENSKGIQEIIKIRTGLFRTAMKLAKSKIIDRKYLQLCPFCKNNVPESVEHLILECSKWTQQRQ 927          
BLAST of mRNA_H-paniculata_contig2425.6566.1 vs. uniprot
Match: A0A0F9ZBM3_9MICR (Endonuclease-reverse transcriptase n=2 Tax=Nosema ceranae TaxID=40302 RepID=A0A0F9ZBM3_9MICR)

HSP 1 Score: 173 bits (439), Expect = 6.550e-44
Identity = 125/410 (30.49%), Postives = 191/410 (46.59%), Query Frame = 1
Query:    1 SPTLFNVFINDILDGAQQFGVGIVGTKTRFPGLLFADDLVCMTPNRRKLVKMNNHLTDWMHDNEMQAGIQKCGVMAIKG-----------FATNRLRR----EAERWQLGGEQLPIVEEYQYLGINFTRDLKVTSMMAGRLEGAKKLVNKITPFLRNTSIPVPLKVSVVRAIVVPKMLYGAEIYGMNKKITSQMQQYLTETCRLVIGMSAKNPVSNVSLWRELRMPPICASAAARRARAVSKCEDLATYAKEVTLTKYTSRKWTWFTGAIKWVNRYIKPLAKLHPRVTKPEGYEDGWREVDPQSLAKYIKKLIWLREEKVYESKTSKRYIESRFETHSLARVR----GSGLPLMGKGLSTLIRVRLGGFWTLRKFAVCDMIDEKYKTYCPFCKVGTGETTAHILLECSRW 1173
            SP LF++FIND+L G    GV I G      GLLFADD V M  +   L +  + LT W   +EM     KCG+M I+               N+  R    E E +++ G  +P V EY YLGI FT DL + SMM       +K +  +   L    +PV +K+  ++  +   + YGAE++GM+      +Q+ + E CRLV+G      +  +    EL +  +   AA +RARAV+K     T+   ++ +++ SR+WTW TG IKW+ RY                   GW       L K +   ++     V E+ T  +      E +  A+ R    G   P + +G   + R+R G F  +R      ++D +++++CPFCK    ET  H+   C RW
Sbjct:  465 SPILFDLFINDLLQGMD--GVAIPGVSEAVSGLLFADDAVVMAESESALRRNLDLLTSWSEKHEMSVNASKCGIMKIRATEDVIAGGPNFLQPNKKARVEQQEPEPFEIMGNVVPEVSEYIYLGIRFTPDLCLNSMMQHVESKGRKAIGAMYYLLSKKDMPVYVKILSIKVKLQSILTYGAEVWGMSTLRCKGIQRIMNEACRLVVGGGRNAAMDRIR--SELGIQSVANIAAVKRARAVAKWPGCKTWIATLSTSQFRSREWTWVTGNIKWLKRYA------------------GWNAGG--ELTKVMIDNVF----SVRETDTRTKIGAWAAEYNLTAKPRWIKLGCLYPDLQRGCLGIGRMRSGTFNFVRNLVNKRVLDNRFRSFCPFCKDSVVETIEHLFFFCQRW 846          
BLAST of mRNA_H-paniculata_contig2425.6566.1 vs. uniprot
Match: A0A1R1Y7R2_9FUNG (Putative RNA-directed DNA polymerase from transposon BS n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1Y7R2_9FUNG)

HSP 1 Score: 166 bits (419), Expect = 3.240e-41
Identity = 113/397 (28.46%), Postives = 178/397 (44.84%), Query Frame = 1
Query:    1 SPTLFNVFINDILDGAQQFGVGIVGTKTRFPGLLFADDLVCMTPNRRKLVKMNNHLTDWMHDNEMQAGIQKCGVMAIKGFATNRLRREAERWQLGGEQLPIVEEYQYLGINFTRDLKVTSMMAGRLEGAKKLVNKITPFLRNTSIPVPLKVSVVRAIVVPKMLYGAEIYGMNKKITSQMQQYLTETCRLVIGMSAKNPVSNVSLWRELRMPPICASAAARRARAVSKCEDLATYAKEVTLTKYTSRKWTWFTGAIKWVNRYIKPLAKLHPRVTKPEGYEDGWREVDPQSLAKYIKK------LIWLREEKVYESKTSKRYIESRFETHSLARVRGSGLPLMGKGLSTLIRVRLGGFWTLRKFAVCDMIDEKYKTYCPFCKVGTGETTAHILLECSRW 1173
            SP LF+++IND+LDG +  GV I G +   PGLLFADD V +  +  +L      LT W    EMQ    KCG+M I   +T  L      + + G+ +  V+EY+YLG+ F       S +    E  +K    +  FL    +P  ++ +++R +++P + YG EI+GM+    S +Q+   +  RLV G+     +S   L  E+++  I   A+  R R  +K     T+  E+    + +R  TW +G ++W  R++K         T  +         D   + +++ K        W+  E  Y                          P   +G+  L +VR+G F T +  A    I E YK  CPFC V   ET  H+LL C +W
Sbjct:  610 SPMLFDIYINDLLDGIK--GVKIPGIEECIPGLLFADDAVVLAESPAELQIALEKLTAWSQKWEMQINQDKCGIMGINS-STGML------FTIMGKPITQVKEYKYLGVVFNNKWNNLSALQNNKENERKAFQSMYYFLSRKDVPTAMRAALIRTVLIPILCYGCEIFGMSAVRCSTLQKVADDATRLVAGVGRSTALSR--LRSEMKIDDIFTRASVARERGHNKWTTSKTWITELINKPFKNRLDTWVSGTVRWKKRFLKGAGNN----TTAQALRARKIRNDHSKITQWVIKNNLGLTSNWMGLELAY--------------------------PEQARGIRLLAKVRMGAFMTAQSLANSRFISEDYKLKCPFCNVSEAETVEHMLLRCQKW 965          
BLAST of mRNA_H-paniculata_contig2425.6566.1 vs. uniprot
Match: L7JX89_TRAHO (RNA-directed DNA polymerase, Non LTR Retrotransposon (Fragment) n=1 Tax=Trachipleistophora hominis TaxID=72359 RepID=L7JX89_TRAHO)

HSP 1 Score: 161 bits (407), Expect = 9.890e-40
Identity = 122/401 (30.42%), Postives = 196/401 (48.88%), Query Frame = 1
Query:    1 SPTLFNVFINDILDGAQQFGVGIVGTKTRFPGLLFADDLVCMTPNRRKLVKMNNHLTDWMHDNEMQAGIQKCGVMAIKGFATNRLRREAERWQLGGEQLPIVEEYQYLGINFTRDLKVTSMMAGRLEGAKKLVNKITPFLRNTSIPVPLKVSVVRAIVVPKMLYGAEIYGMNKKITSQMQQYLTETCRLVIGMSAKNPVSNVSLWRELRMPPICASAAARRARAVSKCEDLATYAKEVTLTKYTSRKWTWFTGAIKWVNRYIK--PLAKLHPRVTKPEGYEDGWREVDPQSLAKYIKKLIWLREEK---VYESKTSKRYIESRFETHSLARVRGSGLPLMGKGLSTLIRVRLGGFWTLRKFAVCDMIDEKYKTYCPFCKVGTGETTAHILLECSRWAMGRQ 1188
            SPTLFN++IN+IL+G    GVGI G   + PGLLFADD V    +   +V     L DW    +M   I KCG+M    F +N  R  A +++     +P VE Y+YLGI   R+L + +++  R E A++ +  I P +    IP+P++V++++++++P   +G+E+YGM+ + T+ +Q+ + +  R  +   A      ++ + E+R+  I   AA  R RA  K  +  T   +V  T +   K TW+TG  +W+ R +K   L      V K E         D  +  KY +    +RE++   V+ S      I +  ET    RV         +G   L ++R G F    + A    I  +YK  C  C+    E   H+L  CS+W   R+
Sbjct:  428 SPTLFNLYINNILEGIT--GVGI-GNGEQVPGLLFADDAVVFAESYDDMVHNMEILEDWCDKWKMDLNISKCGLMV---FNSNEQR--AIKYK--NANIPTVERYRYLGIPINRNLDLKTVINDRKEKAQQALMIIRPLISRIEIPLPIRVTLIKSVLIPTATFGSELYGMSSQRTAPIQRVIDKAVRCAMACPAN--YCRLTAYEEIRIECIDIRAAKARTRAFIKWRNSRTTISKVMKTDFKCPKTTWYTGTARWIRRLLKNDTLNSTQEGVKKVE---------DALTTGKYARSKSKIREKRRKLVFGSS-----ISNWKETVKNYRV--------NRGWHVLTKIRTGTFMFGYRLAKYGRISSEYKKKCIACEKHGREDGIHLLWHCSKWEKERE 794          
BLAST of mRNA_H-paniculata_contig2425.6566.1 vs. uniprot
Match: A0A1R1YP44_9FUNG (LINE-1 retrotransposable element ORF2 protein (Fragment) n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1YP44_9FUNG)

HSP 1 Score: 161 bits (407), Expect = 1.440e-39
Identity = 111/403 (27.54%), Postives = 183/403 (45.41%), Query Frame = 1
Query:    1 SPTLFNVFINDILDGAQQFGVGIVGTKTRFPGLLFADDLVCMTPNRRKLVKMNNHLTDWMHDNEMQAGIQKCGVMAIKGFATNRLRREAERWQLGGEQLPIVEEYQYLGINFTRDLKVTSMMAGRLEGAKKLVNKITPFLRNTSIPVPLKVSVVRAIVVPKMLYGAEIYGMNKKITSQMQQYLTETCRLVIGMSAKNPVSNVSLWRELRMPPICASAAARRARAVSKCEDLATYAKEVTLTKYTSRKWTWFTGAIKWVNRYIKPL-AKLHPRVTKPEGYEDGWREVDPQSLAKYIKK------LIWLREEKVYESKTSKRYIESRFETHSLARVRGSGLPLMGKGLSTLIRVRLGGFWTLRKFAVCDMIDEKYKTYCPFCKVGTGETTAHILLECSRWAMGRQ 1188
            SP LF++FIND+LDG +  GV + G  T  PGLLFADD V +  +  +L      LT W    EMQ   +KCG+M I   +T  L      + + G+ +  V EY+YLG+ F       S +    +  +K  + +  FL    IP  +++++VR +++P + YG EI+GM+      +Q+   +  RLV G+     +  +    EL++  I    +  R R  +K     T+  E+      +R  TW +G I+W  R++K   +K   +  +     +     D   + +++ K        W+  E  Y                          P   +G+  + +VR+G + T +  A   +I E++KT CPFC     +T  H+LL C +W   RQ
Sbjct: 1296 SPLLFDIFINDLLDGIK--GVKVPGIDTEIPGLLFADDAVVLAESPAELQIALEKLTVWSLKWEMQINQEKCGIMGINS-STGML------FTIMGKPIKQVAEYKYLGVVFNDKWNNLSALKNNRDNGRKAFHSMYYFLSRRDIPTAMRIALVRTVLMPILCYGGEIFGMSATRAGALQKIADDAARLVAGVGRSTALQRIR--NELKIDEINTRVSVARERGHTKWAGSKTWISELINQPLKNRLDTWVSGTIRWKKRFLKGADSKTTAQALRARKIRN-----DHSKITQWVMKNNLGLTSNWMGLELAY--------------------------PEHARGIRLMAKVRMGAYMTAKSLANSRLILEEFKTKCPFCNGSEADTVEHMLLRCQKWNSQRQ 1656          
BLAST of mRNA_H-paniculata_contig2425.6566.1 vs. uniprot
Match: A0A0R0LX01_9MICR (RNA-directed DNA polymerase, Non LTR Retrotransposon n=1 Tax=Pseudoloma neurophilia TaxID=146866 RepID=A0A0R0LX01_9MICR)

HSP 1 Score: 156 bits (395), Expect = 5.940e-39
Identity = 107/396 (27.02%), Postives = 177/396 (44.70%), Query Frame = 1
Query:    1 SPTLFNVFINDILDGAQQFGVGIVGTKTRFPGLLFADDLVCMTPNRRKLVKMNNHLTDWMHDNEMQAGIQKCGVMAIKGFATNRLRREAERWQLGGEQLPIVEEYQYLGINFTRDLKVTSMMAGRLEGAKKLVNKITPFLRNTSIPVPLKVSVVRAIVVPKMLYGAEIYGMNKKITSQMQQYLTETCRLVIGMSAKNPVSNVSLWRELRMPPICASAAARRARAVSKCEDLATYAKEVTLTKYTSRKWTWFTGAIKWVNRYIKPLAKLHPRVTKPEGYEDGWREVDPQSLAKYIKKLIWLREEKVYESKTSKRYIESRFETHSLARVRGSGLPLMGK-----GLSTLIRVRLGGFWTLRKFAVCDMIDEKYKTYCPFCKVGTGETTAHILLECSRW 1173
            SP LFN++IND+LDG    GV I G     PGLLFADD V +  + + L +  N + +W    +M   + KCGV+            +  +  + G ++ ++ +Y YLG+  T DL + +++A R E A    + + PFL    +P  ++  +VRA++VP   YG E+YGM+      +Q+ +    R ++G S+       + + ELR+P +    A  RARA++K     T    +  + +  R  TW TG  +W+   +   A              G RE     +     +L            T +  I      H+L  +     P++       G+  L ++R+G F+   + A   +ID +Y + CP C     E   H+ L C  W
Sbjct:  142 SPILFNLYINDLLDGLS--GVEIGGLT--IPGLLFADDAVILAESPQALQEDLNRIDEWCGRWKMSLNVSKCGVVVFGP-------EDGVQLSVSGSEIAMLSQYTYLGLPMTADLDLEAIVADRKEKATSAYHSLRPFLLRRHVPAVIRAQIVRAVLVPIATYGCELYGMSSARLHPLQRVIDRAIRDILGCSSN--YCRKAAYEELRIPSMALRGAKLRARAITKWSSSRTTIGSLLCSPFKDRSATWMTGTQRWLKTLLHTTAPT------------GVREAVSAVVTAMTTRL----------DATDRSRISQFRRAHNLGCIIPLWKPVLRSPVKVAGMHMLSKMRVGMFYFAYRLAGAGIIDRRYLSECPCCGEAVREDAKHVFLTCGNW 502          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2425.6566.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5H7_9PHAE1.230e-11648.27Reverse transcriptase domain-containing protein n=... [more]
A0A7S1SJ55_9CHLO3.950e-6233.73Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
A0A2R5FKX6_9STRA8.640e-5828.04Retrovirus-related Pol polyprotein from type-1 ret... [more]
A0A7S3PFX4_9STRA1.120e-4733.45Hypothetical protein n=2 Tax=Aplanochytrium stocch... [more]
A0A1R0GP03_9FUNG5.380e-4631.42RNA-directed DNA polymerase from mobile element jo... [more]
A0A0F9ZBM3_9MICR6.550e-4430.49Endonuclease-reverse transcriptase n=2 Tax=Nosema ... [more]
A0A1R1Y7R2_9FUNG3.240e-4128.46Putative RNA-directed DNA polymerase from transpos... [more]
L7JX89_TRAHO9.890e-4030.42RNA-directed DNA polymerase, Non LTR Retrotranspos... [more]
A0A1R1YP44_9FUNG1.440e-3927.54LINE-1 retrotransposable element ORF2 protein (Fra... [more]
A0A0R0LX01_9MICR5.940e-3927.02RNA-directed DNA polymerase, Non LTR Retrotranspos... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2425contigH-paniculata_contig2425:495..1691 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.4
Seed ortholog evalue4e-21
Seed eggNOG ortholog45157.CMT010CT
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ribonuclease H protein
EggNOG OGsKOG1075@1,KOG1075@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size1197
Cds size1197
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929699.1677802-CDS-H-paniculata_contig2425:494..16911622929699.1677802-CDS-H-paniculata_contig2425:494..1691Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2425 495..1691 -
1691480972.0677803-CDS-H-paniculata_contig2425:494..16911691480972.0677803-CDS-H-paniculata_contig2425:494..1691Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2425 495..1691 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2425.6566.1prot_H-paniculata_contig2425.6566.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2425 495..1691 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2425.6566.1

>prot_H-paniculata_contig2425.6566.1 ID=prot_H-paniculata_contig2425.6566.1|Name=mRNA_H-paniculata_contig2425.6566.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=399bp
SPTLFNVFINDILDGAQQFGVGIVGTKTRFPGLLFADDLVCMTPNRRKLV
KMNNHLTDWMHDNEMQAGIQKCGVMAIKGFATNRLRREAERWQLGGEQLP
IVEEYQYLGINFTRDLKVTSMMAGRLEGAKKLVNKITPFLRNTSIPVPLK
VSVVRAIVVPKMLYGAEIYGMNKKITSQMQQYLTETCRLVIGMSAKNPVS
NVSLWRELRMPPICASAAARRARAVSKCEDLATYAKEVTLTKYTSRKWTW
FTGAIKWVNRYIKPLAKLHPRVTKPEGYEDGWREVDPQSLAKYIKKLIWL
REEKVYESKTSKRYIESRFETHSLARVRGSGLPLMGKGLSTLIRVRLGGF
WTLRKFAVCDMIDEKYKTYCPFCKVGTGETTAHILLECSRWAMGRQVWL
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mRNA from alignment at H-paniculata_contig2425:495..1691-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2425.6566.1 ID=mRNA_H-paniculata_contig2425.6566.1|Name=mRNA_H-paniculata_contig2425.6566.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1197bp|location=Sequence derived from alignment at H-paniculata_contig2425:495..1691- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTCCGACTTTATTTAACGTGTTCATTAATGATATATTAGACGGAGCCCA ACAGTTCGGAGTAGGAATCGTAGGAACTAAAACCCGCTTTCCGGGACTTT TATTTGCGGATGACTTGGTGTGCATGACCCCGAACAGAAGGAAATTAGTC AAGATGAACAATCACTTGACGGACTGGATGCATGATAATGAAATGCAAGC CGGTATCCAGAAGTGCGGGGTCATGGCAATCAAGGGATTCGCCACTAATA GATTAAGAAGGGAAGCAGAAAGATGGCAGTTAGGAGGAGAACAGTTACCA ATAGTCGAAGAGTATCAATACCTAGGAATTAATTTTACAAGAGACTTAAA AGTAACTAGTATGATGGCTGGAAGATTGGAAGGAGCGAAGAAATTAGTCA ATAAAATAACCCCGTTCCTCCGAAATACGTCCATCCCAGTGCCTCTAAAA GTTTCAGTGGTTCGAGCGATAGTAGTCCCAAAGATGTTATACGGAGCGGA AATTTACGGAATGAACAAGAAGATCACCTCGCAAATGCAACAGTATCTAA CTGAAACATGTCGCTTGGTGATCGGAATGTCCGCAAAGAATCCCGTATCT AATGTATCACTTTGGAGGGAACTGCGAATGCCGCCGATATGTGCAAGTGC CGCCGCGAGAAGAGCCCGTGCCGTTTCCAAGTGTGAAGACTTAGCAACTT ATGCTAAGGAAGTCACACTCACCAAGTACACTAGTCGAAAGTGGACTTGG TTCACGGGCGCAATCAAGTGGGTAAATCGGTACATCAAACCCCTAGCTAA ATTACACCCACGCGTAACAAAACCCGAAGGATATGAGGACGGATGGAGAG AAGTAGACCCTCAAAGCCTAGCGAAATATATTAAAAAACTGATTTGGCTA AGGGAAGAAAAGGTATATGAATCAAAGACTAGTAAGAGATACATAGAAAG TCGTTTCGAAACACATAGTTTAGCAAGGGTCCGCGGAAGTGGGCTACCCC TAATGGGAAAGGGGTTAAGTACATTAATTAGGGTTAGGCTTGGAGGATTC TGGACTTTACGTAAATTCGCAGTATGTGATATGATAGATGAAAAATACAA GACATACTGCCCGTTTTGTAAGGTAGGAACCGGGGAGACGACTGCCCACA TACTACTGGAGTGTAGTAGGTGGGCCATGGGTCGCCAAGTTTGGTTG
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Coding sequence (CDS) from alignment at H-paniculata_contig2425:495..1691-

>mRNA_H-paniculata_contig2425.6566.1 ID=mRNA_H-paniculata_contig2425.6566.1|Name=mRNA_H-paniculata_contig2425.6566.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2394bp|location=Sequence derived from alignment at H-paniculata_contig2425:495..1691- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTCCGACTTTATTTAACGTGTTCATTAATGATATATTAGACGGAGCCCA
ACAGTTCGGAGTAGGAATCGTAGGAACTAAAACCCGCTTTCCGGGACTTT
TATTTGCGGATGACTTGGTGTGCATGACCCCGAACAGAAGGAAATTAGTC
AAGATGAACAATCACTTGACGGACTGGATGCATGATAATGAAATGCAAGC
CGGTATCCAGAAGTGCGGGGTCATGGCAATCAAGGGATTCGCCACTAATA
GATTAAGAAGGGAAGCAGAAAGATGGCAGTTAGGAGGAGAACAGTTACCA
ATAGTCGAAGAGTATCAATACCTAGGAATTAATTTTACAAGAGACTTAAA
AGTAACTAGTATGATGGCTGGAAGATTGGAAGGAGCGAAGAAATTAGTCA
ATAAAATAACCCCGTTCCTCCGAAATACGTCCATCCCAGTGCCTCTAAAA
GTTTCAGTGGTTCGAGCGATAGTAGTCCCAAAGATGTTATACGGAGCGGA
AATTTACGGAATGAACAAGAAGATCACCTCGCAAATGCAACAGTATCTAA
CTGAAACATGTCGCTTGGTGATCGGAATGTCCGCAAAGAATCCCGTATCT
AATGTATCACTTTGGAGGGAACTGCGAATGCCGCCGATATGTGCAAGTGC
CGCCGCGAGAAGAGCCCGTGCCGTTTCCAAGTGTGAAGACTTAGCAACTT
ATGCTAAGGAAGTCACACTCACCAAGTACACTAGTCGAAAGTGGACTTGG
TTCACGGGCGCAATCAAGTGGGTAAATCGGTACATCAAACCCCTAGCTAA
ATTACACCCACGCGTAACAAAACCCGAAGGATATGAGGACGGATGGAGAG
AAGTAGACCCTCAAAGCCTAGCGAAATATATTAAAAAACTGATTTGGCTA
AGGGAAGAAAAGGTATATGAATCAAAGACTAGTAAGAGATACATAGAAAG
TCGTTTCGAAACACATAGTTTAGCAAGGGTCCGCGGAAGTGGGCTACCCC
TAATGGGAAAGGGGTTAAGTACATTAATTAGGGTTAGGCTTGGAGGATTC
TGGACTTTACGTAAATTCGCAGTATGTGATATGATAGATGAAAAATACAA
GACATACTGCCCGTTTTGTAAGGTAGGAACCGGGGAGACGACTGCCCACA
TACTACTGGAGTGTAGTAGGTGGGCCATGGGTCGCCAAGTTTGGTTGTCT
CCGACTTTATTTAACGTGTTCATTAATGATATATTAGACGGAGCCCAACA
GTTCGGAGTAGGAATCGTAGGAACTAAAACCCGCTTTCCGGGACTTTTAT
TTGCGGATGACTTGGTGTGCATGACCCCGAACAGAAGGAAATTAGTCAAG
ATGAACAATCACTTGACGGACTGGATGCATGATAATGAAATGCAAGCCGG
TATCCAGAAGTGCGGGGTCATGGCAATCAAGGGATTCGCCACTAATAGAT
TAAGAAGGGAAGCAGAAAGATGGCAGTTAGGAGGAGAACAGTTACCAATA
GTCGAAGAGTATCAATACCTAGGAATTAATTTTACAAGAGACTTAAAAGT
AACTAGTATGATGGCTGGAAGATTGGAAGGAGCGAAGAAATTAGTCAATA
AAATAACCCCGTTCCTCCGAAATACGTCCATCCCAGTGCCTCTAAAAGTT
TCAGTGGTTCGAGCGATAGTAGTCCCAAAGATGTTATACGGAGCGGAAAT
TTACGGAATGAACAAGAAGATCACCTCGCAAATGCAACAGTATCTAACTG
AAACATGTCGCTTGGTGATCGGAATGTCCGCAAAGAATCCCGTATCTAAT
GTATCACTTTGGAGGGAACTGCGAATGCCGCCGATATGTGCAAGTGCCGC
CGCGAGAAGAGCCCGTGCCGTTTCCAAGTGTGAAGACTTAGCAACTTATG
CTAAGGAAGTCACACTCACCAAGTACACTAGTCGAAAGTGGACTTGGTTC
ACGGGCGCAATCAAGTGGGTAAATCGGTACATCAAACCCCTAGCTAAATT
ACACCCACGCGTAACAAAACCCGAAGGATATGAGGACGGATGGAGAGAAG
TAGACCCTCAAAGCCTAGCGAAATATATTAAAAAACTGATTTGGCTAAGG
GAAGAAAAGGTATATGAATCAAAGACTAGTAAGAGATACATAGAAAGTCG
TTTCGAAACACATAGTTTAGCAAGGGTCCGCGGAAGTGGGCTACCCCTAA
TGGGAAAGGGGTTAAGTACATTAATTAGGGTTAGGCTTGGAGGATTCTGG
ACTTTACGTAAATTCGCAGTATGTGATATGATAGATGAAAAATACAAGAC
ATACTGCCCGTTTTGTAAGGTAGGAACCGGGGAGACGACTGCCCACATAC
TACTGGAGTGTAGTAGGTGGGCCATGGGTCGCCAAGTTTGGTTG
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