mRNA_H-paniculata_contig2425.6566.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2425.6566.1 vs. uniprot
Match: A0A6H5L5H7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5H7_9PHAE) HSP 1 Score: 375 bits (964), Expect = 1.230e-116 Identity = 195/404 (48.27%), Postives = 260/404 (64.36%), Query Frame = 1
Query: 1 SPTLFNVFINDILDGAQQFGVGIVGTKT----RFPGLLFADDLVCMTPNRRKLVKMNNHLTDWMHDNEMQAGIQKCGVMAIKGFATNRLRREAERWQLGGEQLPIVEEYQYLGINFTRDLKVTSMMAGRLEGAKKLVNKITPFLRNTSIPVPLKVSVVRAIVVPKMLYGAEIYGMNKKITSQMQQYLTETCRLVIGMSAKNPVSNVSLWRELRMPPICASAAARRARAVSKCEDLATYAKEVTLTKYTSRKWTWFTGAIKWVNRYIKPLAK-----LHPRVTKPEGYEDGWREVDPQSLAKYIKKLIWLREEKVYESKTSKRYIESRFETHSLARVRGSGLPLMGKGLSTLIRVRLGGFWTLRKFAVCDMIDEKYKTYCPFCKVGTGETTAHILLECSRWAMGR 1185
SP LFN+FINDILDGA+ GV VG + R PGLLFADDLV ++P R KL M++H++ WM +NEM AGI KCGVMAI G RLR +RW+L GE LPIVE Y YLG+ F R L V MM +L +KLV +TP+L IPVPLKV+VVR +++P++L+GAE++GM IT+++Q Y+ R+V GMS K VS+V+LWREL +PPICASAAARRAR + K L T+ + Y RKWTW TG +W+NRY LAK L ++ +P GW +++PQ L++ I ++W REE+V SKT+ Y + FET+ LA R +G + +GL+ +IR R+GGFW + + MI +YK CP CK E AH+L +C W+ R
Sbjct: 717 SPVLFNIFINDILDGAESLGVPEVGNQLERAPRIPGLLFADDLVTISPTRAKLAAMDDHISVWMAENEMSAGIHKCGVMAI-GHGRRRLRERPDRWKLAGETLPIVESYTYLGLEFNRRLDVEVMMGNKLAAGEKLVTLMTPYLLCRQIPVPLKVAVVRGVILPRLLFGAEVFGMRTSITNRLQVYVNRAYRMVAGMSPKATVSSVALWRELEIPPICASAAARRARTMQKASKLKTWIASIMAQPYKHRKWTWGTGTGRWMNRYSHRLAKATSDDLPAKMRRP----GGWIKMNPQELSRCITAVVWEREERVAWSKTADDYKQMHFETNPLAAARAAGHATLEEGLALIIRCRVGGFWGAGRLSRRGMIHPRYKRMCPCCKRRVEEDLAHVLFDCPTWSEAR 1115
BLAST of mRNA_H-paniculata_contig2425.6566.1 vs. uniprot
Match: A0A7S1SJ55_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SJ55_9CHLO) HSP 1 Score: 226 bits (575), Expect = 3.950e-62 Identity = 140/415 (33.73%), Postives = 215/415 (51.81%), Query Frame = 1
Query: 1 SPTLFNVFINDILDGAQQFGVGIVGT--------KTRFPGLLFADDLVCMTPNRRKLVKMNNHLTDWMHDNEMQAGIQKCGVMAIKGFA-TNRLRREAERWQLGGEQLPIVEEYQYLGINFTRDLKVTSMMAGRLEGAKKLVNKITPFLRNTSIPVPLKVSVVRAIVVPKMLYGAEIYGMNKKI-TSQMQQYLTETCRLVIGMSAKNP-VSNVSLWRELRMPPICASAAARRARAVSKCEDLATYAKEVTLTKYTSRKWTWFTGAIKWVNRYIKPLAKLHPRVTKPEGYEDGWREVDPQSLAKYIKKLIWLREEKVYESKTSKRYIESRFETHSLARVRGSGLPLMGKG--------LSTLIRVRLGGFWTLRKFAVCDMIDEKYKTYCPFCKVGTGETTAHILLECSRWAMGRQ 1188
SP LFN+FINDI DG + G + G R PG LFADD V + P+ L M H + W D+ M G++KCGVMA+ + LR +A+RWQLGGE++P+V EY+YLG DL + +++ R+ +++ V + L IP+ ++ SV++ ++P + YG E++GM+ +++Q L + R ++G+ AK P V+ L REL + PI A AAA R RA K L T ++ R TW +G ++W++R+ + A+L V P WR + P+ + +K +W R E TS + + +S A G+ LP G G L +I++R F T R+ A + E++ +CP C E+ HILLEC RW R+
Sbjct: 615 SPILFNIFINDIFDGIEGLGCEVPGCVDMLDSRQPLRVPGQLFADDTVGLAPSLDNLHAMFAHFSQWAEDHYMGFGVKKCGVMALGRHSDVVALREQADRWQLGGERVPVVSEYRYLGALINSDLSMRNIVGDRVNKSRRAVEALDSVLGGRDIPINVRTSVLKTCILPVLTYGCEVWGMDSTSGVNRLQTILNQCLRRLVGVGAKAPGVATAPLLRELGIAPIEAMAAAARTRAFLKAPTLNTCISDLVRQPSRMRPNTWTSGTVRWLDRFARASAELAQNVRVPP----AWRSLQPRVASNLVKAAVWGRFE------TSSSACTNTWSIYSQASYVGNPLPQYGTGIPAGAVAGLHIMIQLRTRVFPTARRLARIHAMPERFLHHCPACGGDVIESIEHILLECPRWEYHRR 1019
BLAST of mRNA_H-paniculata_contig2425.6566.1 vs. uniprot
Match: A0A2R5FKX6_9STRA (Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fragment) n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5FKX6_9STRA) HSP 1 Score: 209 bits (532), Expect = 8.640e-58 Identity = 150/535 (28.04%), Postives = 222/535 (41.50%), Query Frame = 1
Query: 1 SPTLFNVFINDILDGAQQFGV-------GIVGTKTRFPGLLFADDLVCMTPNRRKLVKMNNHLTDWMHDNEMQAGIQKCGVMA---IKGFATNRLRREAERWQLGGEQLPIVEEYQYLGINFTRDLKVTSMMAGRLEGAKKLVNKITPFLRNTSIPVPLKVSVVRAIVVPKMLYGAEIYGMNKKITSQMQQYLTETCRLVIGMSAKNPVSNVSLWRELRMPPICASAAARRARAVSKC-EDLATYAKEVTLTKYTSRKWTWFTGAIKWVNRYIKPLAKL---HPRVTKPEGYED----------------------------------------------------------------------------------------------------------------------------GWREVD-PQSLAKYIKKLIWLREEKVY-ESKTSKRYIESRFETHSLARVRGSGLPLMGKGLSTLIRVRLGGFWTLRKFAVCDMIDEKYKTYCPFCKVGTGETTAHILLECSRWAMGR 1185
SPTLFNVFINDI DG + GV G G R PGLLFADDLV + + L W++DNE+Q G KCG + + GF L G +PIVE Y YLG+ DL +A RL A++L + FLR +P+ + +V R +++P + YGAEI+ NK T QQ++ +L+ G++ VSNV+LW E +PP+CA+A +RAR +SK +L T+ ++ Y +R+ TW T A +W+N + L + V + G E+ GW V+ P+ L++ ++ ++W+RE++ Y ++K +RY+ RFE L R +P +G+ST++R+R+G F T + A + +YK CP C ET HI L C RWA R
Sbjct: 96 SPTLFNVFINDIFDGHEDLGVLARYHWRGTDGL--RIPGLLFADDLVSFIEDAAGIRPAVERLETWLNDNELQVGHHKCGFLKMGRVPGF-----EEAVAAAPLQGAAVPIVESYTYLGLEIRPDLSRQGTIADRLAKARRLAGSMHSFLRRQDVPIQFRTAVARTVLIPAITYGAEIFAFNKSFTRGAQQFINTQLKLIAGVARGQAVSNVALWHEFGVPPLCATANGQRARLLSKGGRELRTWLAKMVERGYKARRTTWITNARRWLNTHTHRLLRTMLTRESVLEMTGEENLDAFFNLYAAGGDDXXXXXXXXXXXXXXNNAQGPLQLHIEGMAAVFVMMGAGNEAXXXXXXXXXXXXXXXXXXXXXXAPADEAAQDHAXXXDAAELDEARRNDNERRLIGPTMRKAMEFAIQPGGWEAVENPKVLSRLVRAVVWMREDRNYGDAKYGRRYLARRFEEQRLTRASLMAVPGAARGVSTMVRMRIGAFNTTERLARWGLRAARYKHECPCCHSQEPETIGHIFLRCPRWASKR 623
BLAST of mRNA_H-paniculata_contig2425.6566.1 vs. uniprot
Match: A0A7S3PFX4_9STRA (Hypothetical protein n=2 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PFX4_9STRA) HSP 1 Score: 176 bits (446), Expect = 1.120e-47 Identity = 92/275 (33.45%), Postives = 154/275 (56.00%), Query Frame = 1
Query: 361 MMAGRLEGAKKLVNKITPFLRNTSIPVPLKVSVVRAIVVPKMLYGAEIYGMNKKITSQMQQYLTETCRLVIGMSAKNPVSNVSLWRELRMPPICASAAARRARAVSKCEDLATYAKEVTLTKYTSRKWTWFTGAIKWVNRYIKPLAKLHPRVTKPEGY--EDGWREVDPQSLAKYIKKLIWLREE--KVYESKTSKRYIESRFETHSLARVRGSGLPLMGKGLSTLIRVRLGGFWTLRKFAVCDMIDEKYKTYCPFCKVGTGETTAHILLECSRW 1173
M + L+ ++ I PFL IP+ ++ ++ ++++ ++LYGAEIYGMNK +T QQ L E+ ++++G+S K PVS + LW E +PPI A AA+RRAR K ++L T + + Y S +WTW +G ++W+ I + R P +DGW + P+ +A+ + +L+W RE+ K + T +Y+ S F + L + +P++ +GLS ++R R G W K A+ I +Y+T CP C E H++L C++W
Sbjct: 1 MASACLKKGRQTQAAIRPFLGCLDIPLCIRRQILCSVMLSRLLYGAEIYGMNKSLTRHFQQLLDESLKIMLGVSPKMPVSKLVLWEEFGIPPIAALAASRRARVFQKAQNLRTKITTLIQSPYRSLQWTWISGTMRWLRTQI---GRHRRRAGMPHLVFDDDGWERLPPKQMAQSLIQLVWAREKVLKANVNPTFTKYVGSAFVKNRLTSMTTGSVPMLNQGLSLIVRARAGAIWWAFKLALTRKIHARYRTACPCCGASEPENLDHVMLRCAKW 272
BLAST of mRNA_H-paniculata_contig2425.6566.1 vs. uniprot
Match: A0A1R0GP03_9FUNG (RNA-directed DNA polymerase from mobile element jockey n=1 Tax=Smittium mucronatum TaxID=133383 RepID=A0A1R0GP03_9FUNG) HSP 1 Score: 179 bits (455), Expect = 5.380e-46 Identity = 126/401 (31.42%), Postives = 194/401 (48.38%), Query Frame = 1
Query: 1 SPTLFNVFINDILDGAQQFGVGIVGTKTRFPGLLFADDLVCMTPNRRKLVKMNNHLTDWMHDNEMQAGIQKCGVMAIKGFATNRLRREAERWQLGGEQLPIVEEYQYLGINFTRDLKVTSMMAGRLEGAKKLVNKITPFLRNTSIPVPLKVSVVRAIVVPKMLYGAEIYGMNKKITSQMQQYLTETCRLVIGMSAKNPVSNVSLWRELRMPPICASAAARRARAVSKCEDLATYAKEVTLTKYTSRKWTWFTGAIKWVNRYIKPLAKLHPRVTKPEGYEDGWREVDPQSLAKYIKKLIWLREEKVYESKTSKRYIESRFETHSLARVRG-SGLPLM----GKGLSTLIRVRLGGFWTLRKFAVCDMIDEKYKTYCPFCKVGTGETTAHILLECSRWAMGRQ 1188
SP LF+++IND+ + + V +G K + GLLFADD V + KL ++ W EMQ KCGVM I G TN L + + G +P VE Y+YLG+ F S++ E +++ +N + FL N +IP+ L+ +++R++++P YG E++GM+K TS++Q + RLVIG S K ++ L EL++ + A R RA K L T+ ++ SR TW +G +W R+ A P KY+ + E V I + ++ + R+R +GL L+ KG+ +I++R G F T K A +ID KY CPFCK E+ H++LECS+W RQ
Sbjct: 567 SPILFDLYINDLFENIKGITVPEIGEKIK--GLLFADDAVVFADSPAKLQIAFEKVSQWAKKWEMQVNASKCGVMGI-GSQTNML------FTIQGGAVPQVEHYKYLGVMFNDKWNHRSVINNNSENSRRAMNGMYFFLGNKNIPIALRATLIRSVLIPIATYGGELFGMSKARTSKLQTVIDTASRLVIG-SGKT-IALHRLREELKLTTVYTKTAVARERAFYKWPTLKTWITDLIEYPMKSRLDTWVSGTRRWTKRFCDHSA--------------------PGETLKYLDRRTRANEYSV---------ISNWLKSSGIGRIRNVTGLELIFPENSKGIQEIIKIRTGLFRTAMKLAKSKIIDRKYLQLCPFCKNNVPESVEHLILECSKWTQQRQ 927
BLAST of mRNA_H-paniculata_contig2425.6566.1 vs. uniprot
Match: A0A0F9ZBM3_9MICR (Endonuclease-reverse transcriptase n=2 Tax=Nosema ceranae TaxID=40302 RepID=A0A0F9ZBM3_9MICR) HSP 1 Score: 173 bits (439), Expect = 6.550e-44 Identity = 125/410 (30.49%), Postives = 191/410 (46.59%), Query Frame = 1
Query: 1 SPTLFNVFINDILDGAQQFGVGIVGTKTRFPGLLFADDLVCMTPNRRKLVKMNNHLTDWMHDNEMQAGIQKCGVMAIKG-----------FATNRLRR----EAERWQLGGEQLPIVEEYQYLGINFTRDLKVTSMMAGRLEGAKKLVNKITPFLRNTSIPVPLKVSVVRAIVVPKMLYGAEIYGMNKKITSQMQQYLTETCRLVIGMSAKNPVSNVSLWRELRMPPICASAAARRARAVSKCEDLATYAKEVTLTKYTSRKWTWFTGAIKWVNRYIKPLAKLHPRVTKPEGYEDGWREVDPQSLAKYIKKLIWLREEKVYESKTSKRYIESRFETHSLARVR----GSGLPLMGKGLSTLIRVRLGGFWTLRKFAVCDMIDEKYKTYCPFCKVGTGETTAHILLECSRW 1173
SP LF++FIND+L G GV I G GLLFADD V M + L + + LT W +EM KCG+M I+ N+ R E E +++ G +P V EY YLGI FT DL + SMM +K + + L +PV +K+ ++ + + YGAE++GM+ +Q+ + E CRLV+G + + EL + + AA +RARAV+K T+ ++ +++ SR+WTW TG IKW+ RY GW L K + ++ V E+ T + E + A+ R G P + +G + R+R G F +R ++D +++++CPFCK ET H+ C RW
Sbjct: 465 SPILFDLFINDLLQGMD--GVAIPGVSEAVSGLLFADDAVVMAESESALRRNLDLLTSWSEKHEMSVNASKCGIMKIRATEDVIAGGPNFLQPNKKARVEQQEPEPFEIMGNVVPEVSEYIYLGIRFTPDLCLNSMMQHVESKGRKAIGAMYYLLSKKDMPVYVKILSIKVKLQSILTYGAEVWGMSTLRCKGIQRIMNEACRLVVGGGRNAAMDRIR--SELGIQSVANIAAVKRARAVAKWPGCKTWIATLSTSQFRSREWTWVTGNIKWLKRYA------------------GWNAGG--ELTKVMIDNVF----SVRETDTRTKIGAWAAEYNLTAKPRWIKLGCLYPDLQRGCLGIGRMRSGTFNFVRNLVNKRVLDNRFRSFCPFCKDSVVETIEHLFFFCQRW 846
BLAST of mRNA_H-paniculata_contig2425.6566.1 vs. uniprot
Match: A0A1R1Y7R2_9FUNG (Putative RNA-directed DNA polymerase from transposon BS n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1Y7R2_9FUNG) HSP 1 Score: 166 bits (419), Expect = 3.240e-41 Identity = 113/397 (28.46%), Postives = 178/397 (44.84%), Query Frame = 1
Query: 1 SPTLFNVFINDILDGAQQFGVGIVGTKTRFPGLLFADDLVCMTPNRRKLVKMNNHLTDWMHDNEMQAGIQKCGVMAIKGFATNRLRREAERWQLGGEQLPIVEEYQYLGINFTRDLKVTSMMAGRLEGAKKLVNKITPFLRNTSIPVPLKVSVVRAIVVPKMLYGAEIYGMNKKITSQMQQYLTETCRLVIGMSAKNPVSNVSLWRELRMPPICASAAARRARAVSKCEDLATYAKEVTLTKYTSRKWTWFTGAIKWVNRYIKPLAKLHPRVTKPEGYEDGWREVDPQSLAKYIKK------LIWLREEKVYESKTSKRYIESRFETHSLARVRGSGLPLMGKGLSTLIRVRLGGFWTLRKFAVCDMIDEKYKTYCPFCKVGTGETTAHILLECSRW 1173
SP LF+++IND+LDG + GV I G + PGLLFADD V + + +L LT W EMQ KCG+M I +T L + + G+ + V+EY+YLG+ F S + E +K + FL +P ++ +++R +++P + YG EI+GM+ S +Q+ + RLV G+ +S L E+++ I A+ R R +K T+ E+ + +R TW +G ++W R++K T + D + +++ K W+ E Y P +G+ L +VR+G F T + A I E YK CPFC V ET H+LL C +W
Sbjct: 610 SPMLFDIYINDLLDGIK--GVKIPGIEECIPGLLFADDAVVLAESPAELQIALEKLTAWSQKWEMQINQDKCGIMGINS-STGML------FTIMGKPITQVKEYKYLGVVFNNKWNNLSALQNNKENERKAFQSMYYFLSRKDVPTAMRAALIRTVLIPILCYGCEIFGMSAVRCSTLQKVADDATRLVAGVGRSTALSR--LRSEMKIDDIFTRASVARERGHNKWTTSKTWITELINKPFKNRLDTWVSGTVRWKKRFLKGAGNN----TTAQALRARKIRNDHSKITQWVIKNNLGLTSNWMGLELAY--------------------------PEQARGIRLLAKVRMGAFMTAQSLANSRFISEDYKLKCPFCNVSEAETVEHMLLRCQKW 965
BLAST of mRNA_H-paniculata_contig2425.6566.1 vs. uniprot
Match: L7JX89_TRAHO (RNA-directed DNA polymerase, Non LTR Retrotransposon (Fragment) n=1 Tax=Trachipleistophora hominis TaxID=72359 RepID=L7JX89_TRAHO) HSP 1 Score: 161 bits (407), Expect = 9.890e-40 Identity = 122/401 (30.42%), Postives = 196/401 (48.88%), Query Frame = 1
Query: 1 SPTLFNVFINDILDGAQQFGVGIVGTKTRFPGLLFADDLVCMTPNRRKLVKMNNHLTDWMHDNEMQAGIQKCGVMAIKGFATNRLRREAERWQLGGEQLPIVEEYQYLGINFTRDLKVTSMMAGRLEGAKKLVNKITPFLRNTSIPVPLKVSVVRAIVVPKMLYGAEIYGMNKKITSQMQQYLTETCRLVIGMSAKNPVSNVSLWRELRMPPICASAAARRARAVSKCEDLATYAKEVTLTKYTSRKWTWFTGAIKWVNRYIK--PLAKLHPRVTKPEGYEDGWREVDPQSLAKYIKKLIWLREEK---VYESKTSKRYIESRFETHSLARVRGSGLPLMGKGLSTLIRVRLGGFWTLRKFAVCDMIDEKYKTYCPFCKVGTGETTAHILLECSRWAMGRQ 1188
SPTLFN++IN+IL+G GVGI G + PGLLFADD V + +V L DW +M I KCG+M F +N R A +++ +P VE Y+YLGI R+L + +++ R E A++ + I P + IP+P++V++++++++P +G+E+YGM+ + T+ +Q+ + + R + A ++ + E+R+ I AA R RA K + T +V T + K TW+TG +W+ R +K L V K E D + KY + +RE++ V+ S I + ET RV +G L ++R G F + A I +YK C C+ E H+L CS+W R+
Sbjct: 428 SPTLFNLYINNILEGIT--GVGI-GNGEQVPGLLFADDAVVFAESYDDMVHNMEILEDWCDKWKMDLNISKCGLMV---FNSNEQR--AIKYK--NANIPTVERYRYLGIPINRNLDLKTVINDRKEKAQQALMIIRPLISRIEIPLPIRVTLIKSVLIPTATFGSELYGMSSQRTAPIQRVIDKAVRCAMACPAN--YCRLTAYEEIRIECIDIRAAKARTRAFIKWRNSRTTISKVMKTDFKCPKTTWYTGTARWIRRLLKNDTLNSTQEGVKKVE---------DALTTGKYARSKSKIREKRRKLVFGSS-----ISNWKETVKNYRV--------NRGWHVLTKIRTGTFMFGYRLAKYGRISSEYKKKCIACEKHGREDGIHLLWHCSKWEKERE 794
BLAST of mRNA_H-paniculata_contig2425.6566.1 vs. uniprot
Match: A0A1R1YP44_9FUNG (LINE-1 retrotransposable element ORF2 protein (Fragment) n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1YP44_9FUNG) HSP 1 Score: 161 bits (407), Expect = 1.440e-39 Identity = 111/403 (27.54%), Postives = 183/403 (45.41%), Query Frame = 1
Query: 1 SPTLFNVFINDILDGAQQFGVGIVGTKTRFPGLLFADDLVCMTPNRRKLVKMNNHLTDWMHDNEMQAGIQKCGVMAIKGFATNRLRREAERWQLGGEQLPIVEEYQYLGINFTRDLKVTSMMAGRLEGAKKLVNKITPFLRNTSIPVPLKVSVVRAIVVPKMLYGAEIYGMNKKITSQMQQYLTETCRLVIGMSAKNPVSNVSLWRELRMPPICASAAARRARAVSKCEDLATYAKEVTLTKYTSRKWTWFTGAIKWVNRYIKPL-AKLHPRVTKPEGYEDGWREVDPQSLAKYIKK------LIWLREEKVYESKTSKRYIESRFETHSLARVRGSGLPLMGKGLSTLIRVRLGGFWTLRKFAVCDMIDEKYKTYCPFCKVGTGETTAHILLECSRWAMGRQ 1188
SP LF++FIND+LDG + GV + G T PGLLFADD V + + +L LT W EMQ +KCG+M I +T L + + G+ + V EY+YLG+ F S + + +K + + FL IP +++++VR +++P + YG EI+GM+ +Q+ + RLV G+ + + EL++ I + R R +K T+ E+ +R TW +G I+W R++K +K + + + D + +++ K W+ E Y P +G+ + +VR+G + T + A +I E++KT CPFC +T H+LL C +W RQ
Sbjct: 1296 SPLLFDIFINDLLDGIK--GVKVPGIDTEIPGLLFADDAVVLAESPAELQIALEKLTVWSLKWEMQINQEKCGIMGINS-STGML------FTIMGKPIKQVAEYKYLGVVFNDKWNNLSALKNNRDNGRKAFHSMYYFLSRRDIPTAMRIALVRTVLMPILCYGGEIFGMSATRAGALQKIADDAARLVAGVGRSTALQRIR--NELKIDEINTRVSVARERGHTKWAGSKTWISELINQPLKNRLDTWVSGTIRWKKRFLKGADSKTTAQALRARKIRN-----DHSKITQWVMKNNLGLTSNWMGLELAY--------------------------PEHARGIRLMAKVRMGAYMTAKSLANSRLILEEFKTKCPFCNGSEADTVEHMLLRCQKWNSQRQ 1656
BLAST of mRNA_H-paniculata_contig2425.6566.1 vs. uniprot
Match: A0A0R0LX01_9MICR (RNA-directed DNA polymerase, Non LTR Retrotransposon n=1 Tax=Pseudoloma neurophilia TaxID=146866 RepID=A0A0R0LX01_9MICR) HSP 1 Score: 156 bits (395), Expect = 5.940e-39 Identity = 107/396 (27.02%), Postives = 177/396 (44.70%), Query Frame = 1
Query: 1 SPTLFNVFINDILDGAQQFGVGIVGTKTRFPGLLFADDLVCMTPNRRKLVKMNNHLTDWMHDNEMQAGIQKCGVMAIKGFATNRLRREAERWQLGGEQLPIVEEYQYLGINFTRDLKVTSMMAGRLEGAKKLVNKITPFLRNTSIPVPLKVSVVRAIVVPKMLYGAEIYGMNKKITSQMQQYLTETCRLVIGMSAKNPVSNVSLWRELRMPPICASAAARRARAVSKCEDLATYAKEVTLTKYTSRKWTWFTGAIKWVNRYIKPLAKLHPRVTKPEGYEDGWREVDPQSLAKYIKKLIWLREEKVYESKTSKRYIESRFETHSLARVRGSGLPLMGK-----GLSTLIRVRLGGFWTLRKFAVCDMIDEKYKTYCPFCKVGTGETTAHILLECSRW 1173
SP LFN++IND+LDG GV I G PGLLFADD V + + + L + N + +W +M + KCGV+ + + + G ++ ++ +Y YLG+ T DL + +++A R E A + + PFL +P ++ +VRA++VP YG E+YGM+ +Q+ + R ++G S+ + + ELR+P + A RARA++K T + + + R TW TG +W+ + A G RE + +L T + I H+L + P++ G+ L ++R+G F+ + A +ID +Y + CP C E H+ L C W
Sbjct: 142 SPILFNLYINDLLDGLS--GVEIGGLT--IPGLLFADDAVILAESPQALQEDLNRIDEWCGRWKMSLNVSKCGVVVFGP-------EDGVQLSVSGSEIAMLSQYTYLGLPMTADLDLEAIVADRKEKATSAYHSLRPFLLRRHVPAVIRAQIVRAVLVPIATYGCELYGMSSARLHPLQRVIDRAIRDILGCSSN--YCRKAAYEELRIPSMALRGAKLRARAITKWSSSRTTIGSLLCSPFKDRSATWMTGTQRWLKTLLHTTAPT------------GVREAVSAVVTAMTTRL----------DATDRSRISQFRRAHNLGCIIPLWKPVLRSPVKVAGMHMLSKMRVGMFYFAYRLAGAGIIDRRYLSECPCCGEAVREDAKHVFLTCGNW 502 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2425.6566.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2425.6566.1 >prot_H-paniculata_contig2425.6566.1 ID=prot_H-paniculata_contig2425.6566.1|Name=mRNA_H-paniculata_contig2425.6566.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=399bp SPTLFNVFINDILDGAQQFGVGIVGTKTRFPGLLFADDLVCMTPNRRKLVback to top mRNA from alignment at H-paniculata_contig2425:495..1691- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2425.6566.1 ID=mRNA_H-paniculata_contig2425.6566.1|Name=mRNA_H-paniculata_contig2425.6566.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1197bp|location=Sequence derived from alignment at H-paniculata_contig2425:495..1691- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2425:495..1691- >mRNA_H-paniculata_contig2425.6566.1 ID=mRNA_H-paniculata_contig2425.6566.1|Name=mRNA_H-paniculata_contig2425.6566.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2394bp|location=Sequence derived from alignment at H-paniculata_contig2425:495..1691- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |