mRNA_H-paniculata_contig24230.6562.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24230.6562.1
Unique NamemRNA_H-paniculata_contig24230.6562.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig24230.6562.1 vs. uniprot
Match: UPI001CDB8C50 (uncharacterized protein LOC122853856 n=1 Tax=Aphidius gifuensis TaxID=684658 RepID=UPI001CDB8C50)

HSP 1 Score: 64.7 bits (156), Expect = 2.760e-8
Identity = 44/156 (28.21%), Postives = 76/156 (48.72%), Query Frame = 1 
Query:  355 NSSGG--KQRKCRRCKLPGHFWYECKAR----VIPAQTQVQDASSTSGEQVSGVSVALISSSGSHNDGDEFGLETGF-ETWRSDSAATFHMTGSKEYMRD-IRPSNDQVRIGDYQLIDVECVGTLTIIFPSVNGEVTLRLEDVAYVPRLKYNLLSL 798
            N  GG  K + C  CK  GH W  C  R       A+    + + ++ E+ + +   L++SS          L  G  + W  DS A++HM+G KE+  + ++     +R+GD ++++    GT+ I   +    V + L +V ++P LKYNL S+
Sbjct:  219 NKKGGTKKDKTCTYCKKTGHLWKSCYKRKNDEADKAKQPKGEVADSTHEEGTFIHELLMASS----------LPKGLSDKWLFDSGASYHMSGRKEWFTNMVKKEKSLIRVGDGKVLETNLYGTINISVFNGESWVKMSLNNVLFIPELKYNLFSM 364
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BLAST of mRNA_H-paniculata_contig24230.6562.1 vs. uniprot
Match: UPI0010172210 (uncharacterized protein LOC114170345 n=1 Tax=Vigna unguiculata TaxID=3917 RepID=UPI0010172210)

HSP 1 Score: 58.9 bits (141), Expect = 1.270e-7
Identity = 32/79 (40.51%), Postives = 50/79 (63.29%), Query Frame = 1 
Query:  562 GFETWRSDSAATFHMTGSKEYMRDIRPS-NDQVRIGDYQLIDVECVGTLTIIFPSVNGEVTLRLEDVAYVPRLKYNLLS 795
            G E W  D+  + HMTG KE++ +I  S ++++++ D  +I  E VG + I     +G+ T+ +EDV YVP +KYNLLS
Sbjct:   10 GRENWFLDTRCSNHMTGHKEWLSNIDTSRSNKIKLADDNMIRAEGVGNVVI---KKDGKETMVIEDVLYVPGIKYNLLS 85
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BLAST of mRNA_H-paniculata_contig24230.6562.1 vs. uniprot
Match: A0A6D2J390_9BRAS (CCHC-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2J390_9BRAS)

HSP 1 Score: 57.0 bits (136), Expect = 1.020e-5
Identity = 44/145 (30.34%), Postives = 71/145 (48.97%), Query Frame = 1 
Query:  382 CRRCKLPGHFWYECKARVIP-----AQTQVQDASSTSGEQVSGVSVALISSSGSHNDGDEFGLETGFETWRSDSAATFHMTGSKEYMRDIRPS-NDQVRIGDYQLIDVECVGTLTIIFPSVNGEVTLRLEDVAYVPRLKYNLLSL 798
            C RC   GH+  +C  R++      AQ    +  +   E++    V ++          E   + G   W  D+ A+ HMTG++ Y ++I  S   +VR GD   +D++  G+  I+F S NGE  + L DV ++P LK N+ SL
Sbjct:  224 CYRCDKYGHYASDCPDRLLKLKLQEAQENEDNNDTQEAEKLMMHEVVMLKERNVKQKDFEANSD-GDNVWYLDNGASNHMTGNRNYFKEIDESMTGKVRFGDDSRLDIKGKGS--ILFYSKNGEKKM-LADVYFIPELKSNITSL 364
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24230.6562.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
UPI001CDB8C502.760e-828.21uncharacterized protein LOC122853856 n=1 Tax=Aphid... [more]
UPI00101722101.270e-740.51uncharacterized protein LOC114170345 n=1 Tax=Vigna... [more]
A0A6D2J390_9BRAS1.020e-530.34CCHC-type domain-containing protein n=1 Tax=Microt... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24230contigH-paniculata_contig24230:2123..2974 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size798
Cds size783
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24230.6562.1prot_H-paniculata_contig24230.6562.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24230 2123..2959 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929698.516435-CDS-H-paniculata_contig24230:2122..25441622929698.516435-CDS-H-paniculata_contig24230:2122..2544Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24230 2123..2544 -
1691480971.7390752-CDS-H-paniculata_contig24230:2122..25441691480971.7390752-CDS-H-paniculata_contig24230:2122..2544Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24230 2123..2544 -
1622929698.5329423-CDS-H-paniculata_contig24230:2598..29591622929698.5329423-CDS-H-paniculata_contig24230:2598..2959Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24230 2599..2959 -
1691480971.7495468-CDS-H-paniculata_contig24230:2598..29591691480971.7495468-CDS-H-paniculata_contig24230:2598..2959Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24230 2599..2959 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929698.548129-UTR-H-paniculata_contig24230:2959..29741622929698.548129-UTR-H-paniculata_contig24230:2959..2974Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24230 2960..2974 -
1691480971.7587094-UTR-H-paniculata_contig24230:2959..29741691480971.7587094-UTR-H-paniculata_contig24230:2959..2974Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24230 2960..2974 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24230.6562.1

>prot_H-paniculata_contig24230.6562.1 ID=prot_H-paniculata_contig24230.6562.1|Name=mRNA_H-paniculata_contig24230.6562.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=261bp
MKRGEDPMKLFARTDEIVSVLESLGQTVTESSVNRKLVRALTSDYEMEQR
TILYKETVTRSEIEHVVRQRYMQLPKSRSVGQALVAESQLGRGFGKGKWR
GRGFGKKNSNSGENSSGGKQRKCRRCKLPGHFWYECKARVIPAQTQVQDA
SSTSGEQVSGVSVALISSSGSHNDGDEFGLETGFETWRSDSAATFHMTGS
KEYMRDIRPSNDQVRIGDYQLIDVECVGTLTIIFPSVNGEVTLRLEDVAY
VPRLKYNLLSL
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mRNA from alignment at H-paniculata_contig24230:2123..2974-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24230.6562.1 ID=mRNA_H-paniculata_contig24230.6562.1|Name=mRNA_H-paniculata_contig24230.6562.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=852bp|location=Sequence derived from alignment at H-paniculata_contig24230:2123..2974- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACGAGACAATTTCGATGAAACGGGGCGAAGATCCCATGAAATTGTTCGC
CCGCACAGACGAGATCGTTTCTGTACTGGAGTCACTAGGACAGACTGTAA
CAGAGTCAAGCGTGAATCGGAAGTTAGTTCGAGCTTTGACATCGGACTAT
GAGATGGAACAGCGCACAATTCTCTACAAAGAGACTGTAACAAGGTCAGA
AATTGAGCACGTAGTAAGACAAAGGTACATGCAGCTCCCAAAATCTAGGA
GTGTGGGTCAGGCTCTTGTAGCCGAGTCACAGCTGGGACGTGGTTTTGGA
AAAGGAAAATGGCGCGGCAGAGGGTTTGGGAAAAAGAACAGCAATAGCGG
AGAAAATTCCTCGGGTGGTAAGCAGAGTAACCGGGCTGGTACAAAGAGTG
AAACTTCATTGGTTCCGGAAGACATGAGAGGGAAGTGTAGACGATGCAAG
CTGCCGGGACATTTTTGGTACGAGTGCAAGGCGCGTGTCATCCCTGCGCA
GACTCAGGTGCAAGATGCATCAAGCACCAGCGGTGAGCAAGTGTCTGGTG
TCTCTGTTGCGTTGATTAGCAGTTCTGGGAGTCACAATGATGGTGATGAA
TTTGGGCTAGAGACGGGTTTTGAGACGTGGAGAAGTGATAGTGCAGCTAC
GTTTCACATGACCGGTTCGAAAGAGTATATGAGAGACATACGTCCGTCCA
ACGACCAGGTCCGAATAGGAGACTATCAACTCATTGATGTGGAGTGTGTA
GGTACTTTAACTATTATCTTTCCGAGTGTGAACGGTGAAGTAACCCTGAG
ACTGGAAGACGTGGCGTATGTTCCAAGGTTAAAGTACAATCTGCTGTCTC
TG
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Coding sequence (CDS) from alignment at H-paniculata_contig24230:2123..2974-

>mRNA_H-paniculata_contig24230.6562.1 ID=mRNA_H-paniculata_contig24230.6562.1|Name=mRNA_H-paniculata_contig24230.6562.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1566bp|location=Sequence derived from alignment at H-paniculata_contig24230:2123..2974- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAACGGGGCGAAGATCCCATGAAATTGTTCGCCCGCACAGACGAGAT
CGTTTCTGTACTGGAGTCACTAGGACAGACTGTAACAGAGTCAAGCGTGA
ATCGGAAGTTAGTTCGAGCTTTGACATCGGACTATGAGATGGAACAGCGC
ACAATTCTCTACAAAGAGACTGTAACAAGGTCAGAAATTGAGCACGTAGT
AAGACAAAGGTACATGCAGCTCCCAAAATCTAGGAGTGTGGGTCAGGCTC
TTGTAGCCGAGTCACAGCTGGGACGTGGTTTTGGAAAAGGAAAATGGCGC
GGCAGAGGGTTTGGGAAAAAGAACAGCAATAGCGGAGAAAATTCCTCGGG
TGGTAAGCAGAATGAAACGGGGCGAAGATCCCATGAAATTGTTCGCCCGC
ACAGACGAGATCGTTTCTGTACTGGAGTCACTAGGACAGACTGTAACAGA
GTCAAGCGTGAATCGGAAGTTAGTTCGAGCTTTGACATCGGACTATGAGA
TGGAACAGCGCACAATTCTCTACAAAGAGACTGTAACAAGGTCAGAAATT
GAGCACGTAGTAAGACAAAGGTACATGCAGCTCCCAAAATCTAGGAGTGT
GGGTCAGGCTCTTGTAGCCGAGTCACAGCTGGGACGTGGTTTTGGAAAAG
GAAAATGGCGCGGCAGAGGGTTTGGGAAAAAGAACAGCAATAGCGGAGAA
AATTCCTCGGGTGGTAAGCAGAGGAAGTGTAGACGATGCAAGCTGCCGGG
ACATTTTTGGTACGAGTGCAAGGCGCGTGTCATCCCTGCGCAGACTCAGG
TGCAAGATGCATCAAGCACCAGCGGTGAGCAAGTGTCTGGTGTCTCTGTT
GCGTTGATTAGCAGTTCTGGGAGTCACAATGATGGTGATGAATTTGGGCT
AGAGACGGGTTTTGAGACGTGGAGAAGTGATAGTGCAGCTACGTTTCACA
TGACCGGTTCGAAAGAGTATATGAGAGACATACGTCCGTCCAACGACCAG
GTCCGAATAGGAGACTATCAACTCATTGATGTGGAGTGTGTAGGTACTTT
AACTATTATCTTTCCGAGTGTGAACGGTGAAGTAACCCTGAGACTGGAAG
ACGTGGCGTATGTTCCAAGGTTAAAGTACAATCTGCTGTCTCTGGGAAGT
GTAGACGATGCAAGCTGCCGGGACATTTTTGGTACGAGTGCAAGGCGCGT
GTCATCCCTGCGCAGACTCAGGTGCAAGATGCATCAAGCACCAGCGGTGA
GCAAGTGTCTGGTGTCTCTGTTGCGTTGATTAGCAGTTCTGGGAGTCACA
ATGATGGTGATGAATTTGGGCTAGAGACGGGTTTTGAGACGTGGAGAAGT
GATAGTGCAGCTACGTTTCACATGACCGGTTCGAAAGAGTATATGAGAGA
CATACGTCCGTCCAACGACCAGGTCCGAATAGGAGACTATCAACTCATTG
ATGTGGAGTGTGTAGGTACTTTAACTATTATCTTTCCGAGTGTGAACGGT
GAAGTAACCCTGAGACTGGAAGACGTGGCGTATGTTCCAAGGTTAAAGTA
CAATCTGCTGTCTCTG
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