mRNA_H-paniculata_contig24215.6560.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig24215.6560.1 vs. uniprot
Match: D7FH37_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH37_ECTSI) HSP 1 Score: 103 bits (257), Expect = 4.120e-25 Identity = 60/96 (62.50%), Postives = 70/96 (72.92%), Query Frame = 1
Query: 4 ALYLAAEMENVRQIAKKDADGARLYAVQKFAKQARWCLFLLDVADNLERAVESAKEG---GAAGASLDTLLEGVEMTSDQVKILLRREKMNYYGSV 282
ALYLAAEMENVR IAKKDA+ ARLYAVQKFAKQ LLDVADNLERA+ SAKE G +S D LL+GVEMTS+++ + R + + YG V
Sbjct: 110 ALYLAAEMENVRSIAKKDAESARLYAVQKFAKQ------LLDVADNLERAIASAKEAEGEGGGDSSHDVLLQGVEMTSNELTKVFRSQGLEKYGEV 199
BLAST of mRNA_H-paniculata_contig24215.6560.1 vs. uniprot
Match: A0A835ZC72_9STRA (GrpE nucleotide exchange factor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC72_9STRA) HSP 1 Score: 76.3 bits (186), Expect = 4.290e-15 Identity = 44/91 (48.35%), Postives = 57/91 (62.64%), Query Frame = 1
Query: 7 LYLAAEMENVRQIAKKDADGARLYAVQKFAKQARWCLFLLDVADNLERAVESAKEGGAAGASLDTLLEGVEMTSDQVKILLRREKMNYYGS 279
+Y AEMENVR IA++DA+ AR +AVQ FAK LLDVADNL RA+E+ + G +L LLEGVEMT Q+ + + YG+
Sbjct: 53 VYTLAEMENVRAIARRDAETARKFAVQGFAKG------LLDVADNLSRAIEAVPKEGEKDPALTVLLEGVEMTEAQLHKAFAAQNLERYGA 137
BLAST of mRNA_H-paniculata_contig24215.6560.1 vs. uniprot
Match: A0A7S4DBF8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DBF8_HETAK) HSP 1 Score: 72.8 bits (177), Expect = 3.620e-13 Identity = 48/98 (48.98%), Postives = 59/98 (60.20%), Query Frame = 1
Query: 7 LYLAAEMENVRQIAKKDADGARLYAVQKFAKQARWCLFLLDVADNLERAVESAKEGGAAG-ASLDTLLEGVEMTSDQVKILLRREKMNYYGSV--PFE 291
L AEMENVR IA++D DGA+ YAVQ FAK LLDVADNLERA+ + AAG L L EGV+MT Q+ + + YG+V PF+
Sbjct: 145 LLAYAEMENVRAIARRDVDGAKTYAVQGFAKG------LLDVADNLERALAAVPAAAAAGDPHLRALQEGVQMTDAQLAKVFAAHHLAKYGAVGDPFD 236
BLAST of mRNA_H-paniculata_contig24215.6560.1 vs. uniprot
Match: A0A4D9CVC4_9STRA (Uncharacterized protein n=2 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CVC4_9STRA) HSP 1 Score: 71.2 bits (173), Expect = 1.210e-12 Identity = 47/102 (46.08%), Postives = 61/102 (59.80%), Query Frame = 1
Query: 7 LYLAAEMENVRQIAKKDADGARLYAVQKFAKQARWCLFLLDVADNLERAV-----ESAKEGGAAGAS-------LDTLLEGVEMTSDQVKILLRREKMNYYG 276
LY AEMENVR IA++DA A+ +A+Q FAKQ LLDVADNL RA+ E+ +EGG AG L TL+EGV MT Q++ + ++ YG
Sbjct: 125 LYTLAEMENVRTIARRDAASAKQFALQSFAKQ------LLDVADNLNRALASVPKEALEEGGEAGGKEGGGSSLLATLVEGVAMTDAQLQKVFAANQIVQYG 220
BLAST of mRNA_H-paniculata_contig24215.6560.1 vs. uniprot
Match: W7TNV9_9STRA (GrpE nucleotide exchange factor n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TNV9_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 1.280e-10 Identity = 43/95 (45.26%), Postives = 57/95 (60.00%), Query Frame = 1
Query: 7 LYLAAEMENVRQIAKKDADGARLYAVQKFAKQARWCLFLLDVADNLERAV-----ESAKEGGAAGASLDTLLEGVEMTSDQVKILLRREKMNYYG 276
LY AEMENVR IA++DA A+ +A+Q FAKQ LLDVADNL RA+ E+ +EGG A +EGV MT Q++ + ++ YG
Sbjct: 60 LYTLAEMENVRTIARRDAASAKQFALQSFAKQ------LLDVADNLNRALASVPKEALEEGGEA-------VEGVAMTDAQLQKVFAANQIVQYG 141
BLAST of mRNA_H-paniculata_contig24215.6560.1 vs. uniprot
Match: V4MNR1_EUTSA (GrpE protein homolog n=2 Tax=Eutrema salsugineum TaxID=72664 RepID=V4MNR1_EUTSA) HSP 1 Score: 65.1 bits (157), Expect = 1.290e-10 Identity = 43/105 (40.95%), Postives = 58/105 (55.24%), Query Frame = 1
Query: 19 AEMENVRQIAKKDADGARLYAVQKFAKQARWCLFLLDVADNLERA----------VESAKEGGAAGASLDTLLEGVEMTSDQVKILLRREKMNYYGSV--PFEKN 297
AEMENV ++DA+ + YAVQ FAK LLDVADNL RA ++++K+ A L TLLEGVEMT Q+ + ++ M Y + PF+ N
Sbjct: 66 AEMENVMDRTRRDAENTKKYAVQNFAKS------LLDVADNLGRASSVVKESFSKLDTSKDSAGAAPLLKTLLEGVEMTEKQLAEVFKKFGMEKYDPINEPFDPN 164
BLAST of mRNA_H-paniculata_contig24215.6560.1 vs. uniprot
Match: A0A1X4NG35_9PROT (Protein GrpE n=4 Tax=Thalassospira TaxID=168934 RepID=A0A1X4NG35_9PROT) HSP 1 Score: 64.7 bits (156), Expect = 1.420e-10 Identity = 36/73 (49.32%), Postives = 48/73 (65.75%), Query Frame = 1
Query: 7 LYLAAEMENVRQIAKKDADGARLYAVQKFAKQARWCLFLLDVADNLERAVESAKEGGAAGASLDTLLEGVEMT 225
L AAE EN+R+ AKKD + + YA+ KFA+ LLDV DNL RA+E+A +G ++ TL+EGVEMT
Sbjct: 47 LRTAAEAENIRRRAKKDVEDSANYAITKFARD------LLDVGDNLRRALEAAGDGANQNEAMKTLIEGVEMT 113
BLAST of mRNA_H-paniculata_contig24215.6560.1 vs. uniprot
Match: A0A1Y2LGZ3_9PROT (Protein GrpE n=1 Tax=Thalassospira alkalitolerans TaxID=1293890 RepID=A0A1Y2LGZ3_9PROT) HSP 1 Score: 63.9 bits (154), Expect = 3.340e-10 Identity = 40/87 (45.98%), Postives = 53/87 (60.92%), Query Frame = 1
Query: 7 LYLAAEMENVRQIAKKDADGARLYAVQKFAKQARWCLFLLDVADNLERAVESAKEGGAAGASLDTLLEGVEMTSDQVKILLRREKMN 267
L AAE+EN R+ AKKD + A YA+ KFA+ LLDV DNL RA+E+A A ++ TL++GVEMT K LL+ + N
Sbjct: 60 LRAAAEVENTRRRAKKDVEDAANYAITKFARD------LLDVGDNLRRALEAAGNDADADPAMKTLIDGVEMTE---KTLLKAMEQN 137
BLAST of mRNA_H-paniculata_contig24215.6560.1 vs. uniprot
Match: A0A367XKC1_9PROT (Protein GrpE n=4 Tax=Thalassospira TaxID=168934 RepID=A0A367XKC1_9PROT) HSP 1 Score: 63.9 bits (154), Expect = 3.380e-10 Identity = 35/73 (47.95%), Postives = 48/73 (65.75%), Query Frame = 1
Query: 7 LYLAAEMENVRQIAKKDADGARLYAVQKFAKQARWCLFLLDVADNLERAVESAKEGGAAGASLDTLLEGVEMT 225
L AAE EN+R+ AKKD + + YA+ KFA+ LLDV+DNL RA+E+ +G ++ TL+EGVEMT
Sbjct: 62 LRTAAEAENIRRRAKKDVEDSANYAITKFARD------LLDVSDNLRRALEAVGDGAQQNEAMKTLIEGVEMT 128
BLAST of mRNA_H-paniculata_contig24215.6560.1 vs. uniprot
Match: A0A7N0U1U3_KALFE (GrpE protein homolog n=2 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0U1U3_KALFE) HSP 1 Score: 64.7 bits (156), Expect = 3.540e-10 Identity = 41/102 (40.20%), Postives = 61/102 (59.80%), Query Frame = 1
Query: 19 AEMENVRQIAKKDADGARLYAVQKFAKQARWCLFLLDVADNLERA----------VESAKEGGAAGASLDTLLEGVEMTSDQVKILLRREKMNYYGSVPFEK 294
AEMENV Q K++A+ ++ +A+Q FAK LLDVADNL RA +++ K+ AA L TL+EGVEMT Q++++ R+ + Y PF++
Sbjct: 143 AEMENVMQRTKREAENSKKFAIQSFAKG------LLDVADNLGRASSVVKESFSKIDTEKDASAAVPLLKTLIEGVEMTEKQLQVVFRKAGIEKYE--PFDE 236 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24215.6560.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig24215.6560.1 >prot_H-paniculata_contig24215.6560.1 ID=prot_H-paniculata_contig24215.6560.1|Name=mRNA_H-paniculata_contig24215.6560.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=93bp MENVRQIAKKDADGARLYAVQKFAKQARWCLFLLDVADNLERAVESAKEGback to top mRNA from alignment at H-paniculata_contig24215:2352..3714- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig24215.6560.1 ID=mRNA_H-paniculata_contig24215.6560.1|Name=mRNA_H-paniculata_contig24215.6560.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1363bp|location=Sequence derived from alignment at H-paniculata_contig24215:2352..3714- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig24215:2352..3714- >mRNA_H-paniculata_contig24215.6560.1 ID=mRNA_H-paniculata_contig24215.6560.1|Name=mRNA_H-paniculata_contig24215.6560.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=558bp|location=Sequence derived from alignment at H-paniculata_contig24215:2352..3714- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |