mRNA_H-paniculata_contig24215.6560.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24215.6560.1
Unique NamemRNA_H-paniculata_contig24215.6560.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig24215.6560.1 vs. uniprot
Match: D7FH37_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH37_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 4.120e-25
Identity = 60/96 (62.50%), Postives = 70/96 (72.92%), Query Frame = 1
Query:    4 ALYLAAEMENVRQIAKKDADGARLYAVQKFAKQARWCLFLLDVADNLERAVESAKEG---GAAGASLDTLLEGVEMTSDQVKILLRREKMNYYGSV 282
            ALYLAAEMENVR IAKKDA+ ARLYAVQKFAKQ      LLDVADNLERA+ SAKE    G   +S D LL+GVEMTS+++  + R + +  YG V
Sbjct:  110 ALYLAAEMENVRSIAKKDAESARLYAVQKFAKQ------LLDVADNLERAIASAKEAEGEGGGDSSHDVLLQGVEMTSNELTKVFRSQGLEKYGEV 199          
BLAST of mRNA_H-paniculata_contig24215.6560.1 vs. uniprot
Match: A0A835ZC72_9STRA (GrpE nucleotide exchange factor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC72_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 4.290e-15
Identity = 44/91 (48.35%), Postives = 57/91 (62.64%), Query Frame = 1
Query:    7 LYLAAEMENVRQIAKKDADGARLYAVQKFAKQARWCLFLLDVADNLERAVESAKEGGAAGASLDTLLEGVEMTSDQVKILLRREKMNYYGS 279
            +Y  AEMENVR IA++DA+ AR +AVQ FAK       LLDVADNL RA+E+  + G    +L  LLEGVEMT  Q+      + +  YG+
Sbjct:   53 VYTLAEMENVRAIARRDAETARKFAVQGFAKG------LLDVADNLSRAIEAVPKEGEKDPALTVLLEGVEMTEAQLHKAFAAQNLERYGA 137          
BLAST of mRNA_H-paniculata_contig24215.6560.1 vs. uniprot
Match: A0A7S4DBF8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DBF8_HETAK)

HSP 1 Score: 72.8 bits (177), Expect = 3.620e-13
Identity = 48/98 (48.98%), Postives = 59/98 (60.20%), Query Frame = 1
Query:    7 LYLAAEMENVRQIAKKDADGARLYAVQKFAKQARWCLFLLDVADNLERAVESAKEGGAAG-ASLDTLLEGVEMTSDQVKILLRREKMNYYGSV--PFE 291
            L   AEMENVR IA++D DGA+ YAVQ FAK       LLDVADNLERA+ +     AAG   L  L EGV+MT  Q+  +     +  YG+V  PF+
Sbjct:  145 LLAYAEMENVRAIARRDVDGAKTYAVQGFAKG------LLDVADNLERALAAVPAAAAAGDPHLRALQEGVQMTDAQLAKVFAAHHLAKYGAVGDPFD 236          
BLAST of mRNA_H-paniculata_contig24215.6560.1 vs. uniprot
Match: A0A4D9CVC4_9STRA (Uncharacterized protein n=2 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CVC4_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.210e-12
Identity = 47/102 (46.08%), Postives = 61/102 (59.80%), Query Frame = 1
Query:    7 LYLAAEMENVRQIAKKDADGARLYAVQKFAKQARWCLFLLDVADNLERAV-----ESAKEGGAAGAS-------LDTLLEGVEMTSDQVKILLRREKMNYYG 276
            LY  AEMENVR IA++DA  A+ +A+Q FAKQ      LLDVADNL RA+     E+ +EGG AG         L TL+EGV MT  Q++ +    ++  YG
Sbjct:  125 LYTLAEMENVRTIARRDAASAKQFALQSFAKQ------LLDVADNLNRALASVPKEALEEGGEAGGKEGGGSSLLATLVEGVAMTDAQLQKVFAANQIVQYG 220          
BLAST of mRNA_H-paniculata_contig24215.6560.1 vs. uniprot
Match: W7TNV9_9STRA (GrpE nucleotide exchange factor n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TNV9_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.280e-10
Identity = 43/95 (45.26%), Postives = 57/95 (60.00%), Query Frame = 1
Query:    7 LYLAAEMENVRQIAKKDADGARLYAVQKFAKQARWCLFLLDVADNLERAV-----ESAKEGGAAGASLDTLLEGVEMTSDQVKILLRREKMNYYG 276
            LY  AEMENVR IA++DA  A+ +A+Q FAKQ      LLDVADNL RA+     E+ +EGG A       +EGV MT  Q++ +    ++  YG
Sbjct:   60 LYTLAEMENVRTIARRDAASAKQFALQSFAKQ------LLDVADNLNRALASVPKEALEEGGEA-------VEGVAMTDAQLQKVFAANQIVQYG 141          
BLAST of mRNA_H-paniculata_contig24215.6560.1 vs. uniprot
Match: V4MNR1_EUTSA (GrpE protein homolog n=2 Tax=Eutrema salsugineum TaxID=72664 RepID=V4MNR1_EUTSA)

HSP 1 Score: 65.1 bits (157), Expect = 1.290e-10
Identity = 43/105 (40.95%), Postives = 58/105 (55.24%), Query Frame = 1
Query:   19 AEMENVRQIAKKDADGARLYAVQKFAKQARWCLFLLDVADNLERA----------VESAKEGGAAGASLDTLLEGVEMTSDQVKILLRREKMNYYGSV--PFEKN 297
            AEMENV    ++DA+  + YAVQ FAK       LLDVADNL RA          ++++K+   A   L TLLEGVEMT  Q+  + ++  M  Y  +  PF+ N
Sbjct:   66 AEMENVMDRTRRDAENTKKYAVQNFAKS------LLDVADNLGRASSVVKESFSKLDTSKDSAGAAPLLKTLLEGVEMTEKQLAEVFKKFGMEKYDPINEPFDPN 164          
BLAST of mRNA_H-paniculata_contig24215.6560.1 vs. uniprot
Match: A0A1X4NG35_9PROT (Protein GrpE n=4 Tax=Thalassospira TaxID=168934 RepID=A0A1X4NG35_9PROT)

HSP 1 Score: 64.7 bits (156), Expect = 1.420e-10
Identity = 36/73 (49.32%), Postives = 48/73 (65.75%), Query Frame = 1
Query:    7 LYLAAEMENVRQIAKKDADGARLYAVQKFAKQARWCLFLLDVADNLERAVESAKEGGAAGASLDTLLEGVEMT 225
            L  AAE EN+R+ AKKD + +  YA+ KFA+       LLDV DNL RA+E+A +G     ++ TL+EGVEMT
Sbjct:   47 LRTAAEAENIRRRAKKDVEDSANYAITKFARD------LLDVGDNLRRALEAAGDGANQNEAMKTLIEGVEMT 113          
BLAST of mRNA_H-paniculata_contig24215.6560.1 vs. uniprot
Match: A0A1Y2LGZ3_9PROT (Protein GrpE n=1 Tax=Thalassospira alkalitolerans TaxID=1293890 RepID=A0A1Y2LGZ3_9PROT)

HSP 1 Score: 63.9 bits (154), Expect = 3.340e-10
Identity = 40/87 (45.98%), Postives = 53/87 (60.92%), Query Frame = 1
Query:    7 LYLAAEMENVRQIAKKDADGARLYAVQKFAKQARWCLFLLDVADNLERAVESAKEGGAAGASLDTLLEGVEMTSDQVKILLRREKMN 267
            L  AAE+EN R+ AKKD + A  YA+ KFA+       LLDV DNL RA+E+A     A  ++ TL++GVEMT    K LL+  + N
Sbjct:   60 LRAAAEVENTRRRAKKDVEDAANYAITKFARD------LLDVGDNLRRALEAAGNDADADPAMKTLIDGVEMTE---KTLLKAMEQN 137          
BLAST of mRNA_H-paniculata_contig24215.6560.1 vs. uniprot
Match: A0A367XKC1_9PROT (Protein GrpE n=4 Tax=Thalassospira TaxID=168934 RepID=A0A367XKC1_9PROT)

HSP 1 Score: 63.9 bits (154), Expect = 3.380e-10
Identity = 35/73 (47.95%), Postives = 48/73 (65.75%), Query Frame = 1
Query:    7 LYLAAEMENVRQIAKKDADGARLYAVQKFAKQARWCLFLLDVADNLERAVESAKEGGAAGASLDTLLEGVEMT 225
            L  AAE EN+R+ AKKD + +  YA+ KFA+       LLDV+DNL RA+E+  +G     ++ TL+EGVEMT
Sbjct:   62 LRTAAEAENIRRRAKKDVEDSANYAITKFARD------LLDVSDNLRRALEAVGDGAQQNEAMKTLIEGVEMT 128          
BLAST of mRNA_H-paniculata_contig24215.6560.1 vs. uniprot
Match: A0A7N0U1U3_KALFE (GrpE protein homolog n=2 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0U1U3_KALFE)

HSP 1 Score: 64.7 bits (156), Expect = 3.540e-10
Identity = 41/102 (40.20%), Postives = 61/102 (59.80%), Query Frame = 1
Query:   19 AEMENVRQIAKKDADGARLYAVQKFAKQARWCLFLLDVADNLERA----------VESAKEGGAAGASLDTLLEGVEMTSDQVKILLRREKMNYYGSVPFEK 294
            AEMENV Q  K++A+ ++ +A+Q FAK       LLDVADNL RA          +++ K+  AA   L TL+EGVEMT  Q++++ R+  +  Y   PF++
Sbjct:  143 AEMENVMQRTKREAENSKKFAIQSFAKG------LLDVADNLGRASSVVKESFSKIDTEKDASAAVPLLKTLIEGVEMTEKQLQVVFRKAGIEKYE--PFDE 236          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24215.6560.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FH37_ECTSI4.120e-2562.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZC72_9STRA4.290e-1548.35GrpE nucleotide exchange factor n=1 Tax=Tribonema ... [more]
A0A7S4DBF8_HETAK3.620e-1348.98Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A4D9CVC4_9STRA1.210e-1246.08Uncharacterized protein n=2 Tax=Nannochloropsis sa... [more]
W7TNV9_9STRA1.280e-1045.26GrpE nucleotide exchange factor n=1 Tax=Nannochlor... [more]
V4MNR1_EUTSA1.290e-1040.95GrpE protein homolog n=2 Tax=Eutrema salsugineum T... [more]
A0A1X4NG35_9PROT1.420e-1049.32Protein GrpE n=4 Tax=Thalassospira TaxID=168934 Re... [more]
A0A1Y2LGZ3_9PROT3.340e-1045.98Protein GrpE n=1 Tax=Thalassospira alkalitolerans ... [more]
A0A367XKC1_9PROT3.380e-1047.95Protein GrpE n=4 Tax=Thalassospira TaxID=168934 Re... [more]
A0A7N0U1U3_KALFE3.540e-1040.20GrpE protein homolog n=2 Tax=Kalanchoe fedtschenko... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24215contigH-paniculata_contig24215:2352..3714 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.4
Seed ortholog evalue1.2e-16
Seed eggNOG ortholog2880.D7FH37
KEGG koko:K03687
Hectar predicted targeting categoryother localisation
EggNOG free text desc.adenyl-nucleotide exchange factor activity
EggNOG OGsCOG0576@1,KOG3003@2759
Ec32 ortholog descriptionGrpE nucleotide exchange factor
Ec32 orthologEc-13_000640.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029,ko03110
Exons2
Model size303
Cds size279
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24215.6560.1prot_H-paniculata_contig24215.6560.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24215 2352..3690 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929698.145853-CDS-H-paniculata_contig24215:2351..25341622929698.145853-CDS-H-paniculata_contig24215:2351..2534Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24215 2352..2534 -
1691480971.5200434-CDS-H-paniculata_contig24215:2351..25341691480971.5200434-CDS-H-paniculata_contig24215:2351..2534Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24215 2352..2534 -
1622929698.1572661-CDS-H-paniculata_contig24215:3594..36901622929698.1572661-CDS-H-paniculata_contig24215:3594..3690Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24215 3595..3690 -
1691480971.5312665-CDS-H-paniculata_contig24215:3594..36901691480971.5312665-CDS-H-paniculata_contig24215:3594..3690Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24215 3595..3690 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929698.171398-UTR-H-paniculata_contig24215:3690..37141622929698.171398-UTR-H-paniculata_contig24215:3690..3714Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24215 3691..3714 -
1691480971.5419798-UTR-H-paniculata_contig24215:3690..37141691480971.5419798-UTR-H-paniculata_contig24215:3690..3714Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24215 3691..3714 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24215.6560.1

>prot_H-paniculata_contig24215.6560.1 ID=prot_H-paniculata_contig24215.6560.1|Name=mRNA_H-paniculata_contig24215.6560.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=93bp
MENVRQIAKKDADGARLYAVQKFAKQARWCLFLLDVADNLERAVESAKEG
GAAGASLDTLLEGVEMTSDQVKILLRREKMNYYGSVPFEKNI*
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mRNA from alignment at H-paniculata_contig24215:2352..3714-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24215.6560.1 ID=mRNA_H-paniculata_contig24215.6560.1|Name=mRNA_H-paniculata_contig24215.6560.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1363bp|location=Sequence derived from alignment at H-paniculata_contig24215:2352..3714- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGCTTTGTATCTGGCCGCGGAGATGGAGAATGTTCGGCAGATCGCCAA AAAGGACGCGGATGGGGCCAGGTTGTACGCGGTTCAGAAGTTTGCGAAAC AGGCGCGTTGGTGTTTGTTCGTTTGTCCCCTTGTTGGGTAGTTCGCTTCG TGCTCGTGTATGCTCGTGAGTTTTATTGTGAGTGTTTATTTTCAATATAT CTATCTATCTATATATAGATATTGATATTGATCGATGCTTCTCAATATGT GCTAGCGTGTTCAACATAACTAGTTCACTTGCAAATGATGGAGAGATAAA TCCAGTTTTGGTTTTTGCTTAAGTTAATGATTGAGCGAGAGGCCGCGCAA AATGAATTCGTTTTGTATTTTTTTTTGTTTGGTCGTTTATAGCTGACAGT GACCTAGCTCCTCAGCCTGAATGACCCGTATTCCTTTTTTACAACGAGTG ACTATTTAGTCGTATCTCTGACGAAACAGATGAAAGTTGCACGAATACAT GGACTGCTTGGTAATCTGAAATGACGAATGGAGACCCCTTAACCGTCATC TTAAACGAAGATTTCTATCTCTGCAAATCCTGTTTTATATTTTTCGCTTT CAGAGCGTGTGGATGAAGACATGTTATTTATGTTATAGCCGATGCCTTCT TCGGCTTGACACCTGTAGGGGGTCGGGACGTTGGTGTTGAAGGGCCACCA TCACCTAGTCAATCGTTTCAGACGATTAATTAGTCCTTGTATGTGTGCAA TTTTCATAAGGAATTCTTTCCTAACTGATGTTGGAGTAGGTGAGCTGGGA TCAGGGAAGAGGGGCTCACTGTTAGGTACATACGATGAAACCGAATTTTT GTAAACGAAGATCGTTTTGCGGAATCACTGTATTAATTTCATGTATGTAT GTATTTCGCTCCGTTCGATTTTTTTTATTTTTTATCCATTTTTGTGCATT TTTTTTTTTTTTAATTATTATTTTTTTGTCTTATTTCATGATCTATTATT GATTTTTCATTGACGAATAGAGACAGGTATTTTCTATTTTGGACAAATAA TTTTTTCTCTGTGCCGTAAGAAAAGCCTGTTGTGTTTATAGAGGTATTTT ACCATCTCCGATTTTTCTGCAGTGTATTTCACTTGTCACGATTGCTTGTT GTTGTTACTGGTGTTATTGGCGGGTGGCAGCTTCTGGATGTGGCGGACAA TTTAGAGCGAGCTGTGGAGTCAGCAAAGGAGGGAGGGGCCGCCGGAGCCT CGCTGGACACCCTACTCGAAGGCGTTGAAATGACGAGCGACCAGGTGAAA ATATTACTTCGACGTGAAAAAATGAATTACTACGGTTCTGTACCCTTTGA AAAAAATATATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig24215:2352..3714-

>mRNA_H-paniculata_contig24215.6560.1 ID=mRNA_H-paniculata_contig24215.6560.1|Name=mRNA_H-paniculata_contig24215.6560.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=558bp|location=Sequence derived from alignment at H-paniculata_contig24215:2352..3714- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGAATGTTCGGCAGATCGCCAAAAAGGACGCGGATGGGGCCAGGTT
GTACGCGGTTCAGAAGTTTGCGAAACAGGCGCGTTGGTGTTTGTTCATGG
AGAATGTTCGGCAGATCGCCAAAAAGGACGCGGATGGGGCCAGGTTGTAC
GCGGTTCAGAAGTTTGCGAAACAGGCGCGTTGGTGTTTGTTCCTTCTGGA
TGTGGCGGACAATTTAGAGCGAGCTGTGGAGTCAGCAAAGGAGGGAGGGG
CCGCCGGAGCCTCGCTGGACACCCTACTCGAAGGCGTTGAAATGACGAGC
GACCAGGTGAAAATATTACTTCGACGTGAAAAAATGAATTACTACGGTTC
TGTACCCTTTGAAAAAAATATATGACTTCTGGATGTGGCGGACAATTTAG
AGCGAGCTGTGGAGTCAGCAAAGGAGGGAGGGGCCGCCGGAGCCTCGCTG
GACACCCTACTCGAAGGCGTTGAAATGACGAGCGACCAGGTGAAAATATT
ACTTCGACGTGAAAAAATGAATTACTACGGTTCTGTACCCTTTGAAAAAA
ATATATGA
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