mRNA_H-paniculata_contig24201.6557.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24201.6557.1
Unique NamemRNA_H-paniculata_contig24201.6557.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig24201.6557.1 vs. uniprot
Match: A0A6H5JKK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKK0_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 3.230e-20
Identity = 44/58 (75.86%), Postives = 51/58 (87.93%), Query Frame = 1 
Query:    1 KFFAAIAYRCSPAVKMLPVRVTCKLRTAGSAVLVWAQVIANPQIAKPLSGVSVLVQLP 174
            +F  A+ YRCSPAVK+LPVRVTC+LRTAG+ VLVW QVIANPQ+ +PLSGVSVLV LP
Sbjct:  456 RFLPALMYRCSPAVKVLPVRVTCRLRTAGNRVLVWVQVIANPQLPQPLSGVSVLVNLP 513
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BLAST of mRNA_H-paniculata_contig24201.6557.1 vs. uniprot
Match: D7FGR2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGR2_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 2.110e-19
Identity = 43/58 (74.14%), Postives = 50/58 (86.21%), Query Frame = 1 
Query:    1 KFFAAIAYRCSPAVKMLPVRVTCKLRTAGSAVLVWAQVIANPQIAKPLSGVSVLVQLP 174
            +F  A+ YRCSPAVK+LPVRVTC+LRTAG+ VLVW QVIANPQ++ PLSGV VLV LP
Sbjct:  530 RFLPALMYRCSPAVKVLPVRVTCRLRTAGNRVLVWVQVIANPQLSHPLSGVLVLVNLP 587
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24201.6557.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JKK0_9PHAE3.230e-2075.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FGR2_ECTSI2.110e-1974.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24201contigH-paniculata_contig24201:2911..3084 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.6
Seed ortholog evalue1.1e-15
Seed eggNOG ortholog2880.D7FGR2
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG OGs2E9RS@1,2SG2K@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-04_001180.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size174
Cds size174
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929697.438828-CDS-H-paniculata_contig24201:2910..30841622929697.438828-CDS-H-paniculata_contig24201:2910..3084Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24201 2911..3084 +
1691480971.448771-CDS-H-paniculata_contig24201:2910..30841691480971.448771-CDS-H-paniculata_contig24201:2910..3084Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24201 2911..3084 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24201.6557.1prot_H-paniculata_contig24201.6557.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24201 2911..3084 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24201.6557.1

>prot_H-paniculata_contig24201.6557.1 ID=prot_H-paniculata_contig24201.6557.1|Name=mRNA_H-paniculata_contig24201.6557.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=58bp
KFFAAIAYRCSPAVKMLPVRVTCKLRTAGSAVLVWAQVIANPQIAKPLSG
VSVLVQLP
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mRNA from alignment at H-paniculata_contig24201:2911..3084+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24201.6557.1 ID=mRNA_H-paniculata_contig24201.6557.1|Name=mRNA_H-paniculata_contig24201.6557.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=174bp|location=Sequence derived from alignment at H-paniculata_contig24201:2911..3084+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAATTCTTTGCCGCGATCGCGTACCGGTGCTCTCCGGCAGTGAAGATGCT
ACCCGTTAGGGTCACGTGTAAGTTGCGAACTGCCGGGTCTGCCGTGCTCG
TGTGGGCTCAGGTGATCGCGAATCCGCAGATAGCGAAGCCGCTCTCCGGG
GTGTCCGTCTTGGTGCAACTTCCC
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Coding sequence (CDS) from alignment at H-paniculata_contig24201:2911..3084+

>mRNA_H-paniculata_contig24201.6557.1 ID=mRNA_H-paniculata_contig24201.6557.1|Name=mRNA_H-paniculata_contig24201.6557.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=348bp|location=Sequence derived from alignment at H-paniculata_contig24201:2911..3084+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAATTCTTTGCCGCGATCGCGTACCGGTGCTCTCCGGCAGTGAAGATGCT
ACCCGTTAGGGTCACGTGTAAGTTGCGAACTGCCGGGTCTGCCGTGCTCG
TGTGGGCTCAGGTGATCGCGAATCCGCAGATAGCGAAGCCGCTCTCCGGG
GTGTCCGTCTTGGTGCAACTTCCCAAATTCTTTGCCGCGATCGCGTACCG
GTGCTCTCCGGCAGTGAAGATGCTACCCGTTAGGGTCACGTGTAAGTTGC
GAACTGCCGGGTCTGCCGTGCTCGTGTGGGCTCAGGTGATCGCGAATCCG
CAGATAGCGAAGCCGCTCTCCGGGGTGTCCGTCTTGGTGCAACTTCCC
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