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Homology
BLAST of mRNA_H-paniculata_contig242.6552.1 vs. uniprot
Match: D8LB75_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB75_ECTSI) HSP 1 Score: 149 bits (377), Expect = 1.030e-37 Identity = 94/225 (41.78%), Postives = 135/225 (60.00%), Query Frame = 2
Query: 23 DMHSGSAFEALSLDIGSFSIAPCVQDTAGAKLAVDISGKLHEMALALALKGPKPELMDTMRVGLPLQKLDLFPVPERRIILPVDMKIRYNTTVSFRADEAPEAMTTDLVGDVIATECKGAAAAGVGDGIGKETDGVDGEMQEGQDEKG---TENMAQMATPLTEDEKGENMQGPSSAGLYVETEIKLHVPSGLQIKVTDLDLSVIKCTVNSLLSSLS---ATPPA 679
DM SGSAFEAL++ + FS+APCVQ + A+ G+LHE +A+AL+GP PEL++ + G PL+ LDLFP+PERRIILPV MKI+Y+T V+ A + EA T LV D++ + AA + K+ V +D+ G T A+ T+ +Q +G +V+ E++LHV SGL +KVTDLD++V++ SL++SL A PPA
Sbjct: 963 DMKSGSAFEALAVSVCDFSVAPCVQRPEASDAAIVSCGRLHETGVAIALRGPLPELLEVIHRGFPLKDLDLFPIPERRIILPVKMKIKYSTYVALTAGDTLEASTATLVTDMVQRNSESDLAAMHTADVEKQELAVTALSGGEEDQAGGGPTSAAAETDGNTTDSATASEVQ----SGWHVKMEVQLHVSSGLYVKVTDLDIAVLQGIATSLIASLGVGEAAPPA 1183
BLAST of mRNA_H-paniculata_contig242.6552.1 vs. uniprot
Match: A0A6H5K9E5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9E5_9PHAE) HSP 1 Score: 144 bits (362), Expect = 9.930e-36 Identity = 92/235 (39.15%), Postives = 131/235 (55.74%), Query Frame = 2
Query: 2 QVPHFMADMHSGSAFEALSLDIGSFSIAPCVQDTAGAKLAVDISGKLHEMALALALKGPKPELMDTMRVGLPLQKLDLFPVPERRIILPVDMKIRYNTTVSFRADEAPEAMTTDLVGDVIATECKGAAAAGVGDGIGKETDGVDGEMQE------GQDEKGTENMAQMATPLTEDEKGENMQGPSSAGLYVETEIKLHVPSGLQIKVTDLDLSVIKCTVNSLLSSLS---ATPPA 679
Q + DM SGSAFEAL++ + FS+APCVQ + A+ G+LHE +A+AL+GP+PEL++ + G PL+ LDLFP+PERRIILPV MKI+Y+T V+ A + EA T LV D++ + AA VD E Q+ E + + +G +V +++LHV SGL +KVTDLD++V++ SL++SLS A PPA
Sbjct: 1015 QCSALVLDMKSGSAFEALAVSVCDFSVAPCVQRLEASDAAIVSCGRLHETGVAIALRGPQPELLEVIHRGFPLKDLDLFPIPERRIILPVKMKIKYSTYVALTAGDTLEATTATLVTDMMQRNSESDLAA---------MHSVDLEQQQLAVTALSGXXXXXXXXXXXXXXXXETDGNTTDSATTRSGWHVNMDVQLHVSSGLYVKVTDLDIAVLQGIATSLMASLSVGEAAPPA 1240
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 150.6 |
| Seed ortholog evalue | 8.7e-34 |
| Seed eggNOG ortholog | 2880.D8LB75 |
| KEGG rclass | RC00055,RC00523 |
| KEGG ko | ko:K01870,ko:K02183,ko:K12486 |
| KEGG Reaction | R03656 |
| KEGG Pathway | ko00970,ko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04070,ko04114,ko04144,ko04218,ko04261,ko04270,ko04371,ko04626,ko04713,ko04720,ko04722,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04970,ko04971,ko05010,ko05031,ko05034,ko05133,ko05152,ko05167,ko05200,ko05214,ko05418,map00970,map04014,map04015,map04016,map04020,map04022,map04024,map04070,map04114,map04144,map04218,map04261,map04270,map04371,map04626,map04713,map04720,map04722,map04728,map04740,map04744,map04745,map04750,map04910,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04970,map04971,map05010,map05031,map05034,map05133,map05152,map05167,map05200,map05214,map05418 |
| KEGG Module | M00359,M00360 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | Ca2 -binding protein (EF-Hand superfamily |
| EggNOG OGs | COG5043@1,COG5126@1,KOG0027@2759,KOG1809@2759 |
| EC | 6.1.1.5 |
| COG Functional cat. | DTZ |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko00002,ko01000,ko01007,ko01009,ko03016,ko03036,ko04131,ko04147 |
| Exons | 4 |
| Model size | 689 |
| Cds size | 672 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig242.6552.1 >prot_H-paniculata_contig242.6552.1 ID=prot_H-paniculata_contig242.6552.1|Name=mRNA_H-paniculata_contig242.6552.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=224bp
MADMHSGSAFEALSLDIGSFSIAPCVQDTAGAKLAVDISGKLHEMALALA
LKGPKPELMDTMRVGLPLQKLDLFPVPERRIILPVDMKIRYNTTVSFRAD
EAPEAMTTDLVGDVIATECKGAAAAGVGDGIGKETDGVDGEMQEGQDEKG
TENMAQMATPLTEDEKGENMQGPSSAGLYVETEIKLHVPSGLQIKVTDLD
LSVIKCTVNSLLSSLSATPPADAA back to topmRNA from alignment at H-paniculata_contig242:32246..35636- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig242.6552.1 ID=mRNA_H-paniculata_contig242.6552.1|Name=mRNA_H-paniculata_contig242.6552.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3391bp|location=Sequence derived from alignment at H-paniculata_contig242:32246..35636- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCAGGTTCCACACTTTATGGCCGATATGCACAGCGGCAGTGCATTCGAGG
CCCTCTCTTTAGATATAGGGTCTTTCTCAATCGCGCCTTGTGTACAGGAC
ACGGCGGGTGCGAAACTTGCAGTCGACATCTCCGGCAAGCTGCACGAGAT
GGCTCTAGCCCTGGCCCTCAAGGGCCCGAAGCCTGAATTAATGGACACAA
TGAGAGTGGGTCTTCCACTTCAGGTAGGTGCACAATCAGGCGGTGCTTCT
CAACGCTAGGCAAGCGCACACAACAAATTAAGGGACAGGGACAGTGGGGT
ACGCGACACTGTATTACGCTACTGTTCTCGACAGTCGTCGCTGAAGAATC
CAGTGCTCTGCAGTTCTGTTACTTTATTTTTGGCGTTGAAGCATGAGCTT
TGCGATCCCCTCGCTTTCGCTTCATGTTCATGTTTTTTTCTCGTGTTACT
TCCCCATGCTTCTTTCGGTATCCCTACAGGTAGCTCAGCAACGAGGCATG
TACTGATTCAGCTTGTTTTGCCGCTGCTGTTTTCTCTGTACGCCTTCCGC
CCACCTTTATTATTTCTATGTTATCTCGTGTTCCTCTTACCGGAACATGC
GCCAAACAGAAGCTGGATTTATTCCCCGTTCCCGAGAGGCGCATCATACT
ACCCGTGGACATGAAGATCAGGTACAACACCACGGTTTCCTTCCGAGCGG
ACGAAGCCCCCGAGGCGATGACCACCGACCTGGTCGGTGACGTGATCGCG
ACGGAATGCAAAGGTGCCGCTGCCGCCGGCGTGGGCGATGGCATAGGCAA
GGAGACTGATGGTGTAGACGGAGAGATGCAAGAAGGACAGGTAAAATCGA
CGGGTGGCTTGAAAATAGGTTTGCATCAAATGACTCGTTTGACAGTATTC
CACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTGTGTCCCTCAAAA
ATTGTTTCTCGGCGATATAATAGATCTCGAGCATAAGTTTTGCTGTTCAC
TTGTATTCTTACAGCCATGAAGTCGGTGCAATGGTCTCTCGTAACACCAT
ACAACCAGTCTTGCTCGGTACAGTCAGCCCTAAATACACGTCGAATACGA
CACGAGTAGTTTTTTTTAATGCATTGGAACTTGCATCAAGTTTGCTAGTT
TCGTTCGTTGAATCAAATTGCTTGAAGCGTTTTGCAACACGAAACTCATG
ATGTCGAGCATACGATTAGCTTCCCACTGCTCTGTTATAGCCGTACCATC
AGCGCGGCGGTCTCTCGCAACCCTATGATGCCAGTTTGCTGGGGGGGGGT
GGTGTACCCCCCAATGGATACTCTCGTGCCTGATTTCTCCCACACAACCT
TACTCTGCCCCCAAAATTGGGCAGTTATTCGCTCTGCTGTTATGGGACAT
AGTTAAGAGATGCTCTACCTCGCTAAATACGCCGCTTTGGCACGTACAAA
GAATGCCCAATTTTGGGCCCAAAACGGGTGGTGTTTGGTCCATAACTTTA
ATAAAAAACAGTTGTATGCACACAACCAGGTATCTCCGTAGAGCCTGAGA
ACTGATGCTTTCAATGAATCAGCAGGAACCATTCGAATCTGATGTACTTT
GAAAAAGTTACAACGGCAATTGCCATCACTTGGCCCCAAACAACGGAAAT
CTCACTCTAGCGAAAGAGACTTTTGTGCAAGGGTACGCGCAGCTGAGATT
GTTGCTTGGGGCTTCTTCGGCACAAGGCCCGTAGAAACACAGAGGGATTT
TTGGAGATTCGTCCTGTTGCCCATTTGAGGCCGGTCTTGTGCTGGAAACG
CGCATCTGAACATTTGTTTTCGCTCTTTTTGGCCATATTACACTACATTC
GGTTTTTCGAAGGTAACTCCGTCGATGCGATGATTTAATTTTGTATTGCA
TCGCATTTCTGTTGTTAATGTCGAAAAATGACCGGGGGGATTTTCATTTT
TCTTTTTGTGAAGTCGAGATATTGGAGAAAAAACGGATTTTAGAGGGCTA
AAGGCTAATTTTATGGAAATTCTCATTTCCCATAGGAAAATACGTTTTTT
TGGTTGTAACGTTCGAGGTTTGATTTTTTTCCAAACTTTTGTGCAACTTT
TTGGGTTTTCACTCACGGTGCTGATCCAAAAGTCCGCATTACAAAATTCG
TTGTGCTTCTCGAGATTCGGCGAGCGCCTCCCAACTATGTCCCGTAGTAG
TATATCTACATTGCGCACCCATCAGTTATCTTCGCTGTTTTGCATGCTCA
ATTGACGTAATTTGATTTGCTGAAATGTGTGCCATTATCTTGGATCCAGG
GCCAAAACACGTGAAAAAACGGGATATTTGTCCGTATCGTGCATTTGTAG
GAGGGCGTCTTTCGGCGCATTGATGAAAAATATTCATGCTTAGGCCGAAC
ACTGTTGGAAGGTTTGAGGGTTTCGATTTGCCTTGCGCAAATTCGCGAGT
CACATCACCTGTCAAGAACGAAAAAGATGAATGATTCATTCTCGGGCAGC
AATCATCAATTGATGCCGTTGATGTTGTAGAAGGCTAGTAATGATTCACT
GTGTTCACTGAGATGATGAAGACGATCCACCAAAACACGAGTGTGGTTGG
CTGATTGGCGGGGCTGCTTAGGTAGGGGGTGACTGATGGCTAATCTGAGT
GGAGCGTGCGCGTTTGAGTTTTTCTGTCCGAATATTAACTATTCGCGGTT
TCCTTCTGCTTGAGCAATTTTTTTAATTAATGGTTCAATGTGATCTTTTG
TGAAGGACGAGAAGGGCACTGAAAATATGGCACAGATGGCGACACCGCTT
ACAGAAGACGAGAAGGGAGAAAATATGCAGGGTCCATCGTCGGCCGGGCT
CTACGTCGAAACGGAGATCAAACTGCACGTGCCATCTGGTCTGCAGATAA
AGGTGATCTGGGGTGGGCAAAACCGCGTACATTTCGGGCGGCTTTGGGTT
GGGTAATTGGTCCGACCTGTTTTGCAATTTGTAGCAAGAGCCTATATGCT
GCTGTAGTCGCCGCATCCCCATCACCTGCTGCCGAATGGCGAACGATGTC
TAGACAGCGGGTATGATGGCGAGTGTTCTGCGTCTTTCACCGTATAGCCG
GTAGGGGAAACCTTGATTTTCTTCAAACCCGCGATGCTGATGTCCGCACA
TTTCATGGCTCTGGATAAGACCCGCGCGTGCCGATGTGGTCTAATTCTAA
ATGTTGAATCTTACGGAAATACTATTAACAGATACGAACATTAGTGGTAG
AAAGGGCTTATCTTTCCTGACTCGTTTCACCTGCTCTTCGTGCCGTGAAA
ACAGGTTACCGATCTCGACCTATCGGTAATTAAGTGTACCGTGAATTCAC
TCCTTTCGTCACTTAGTGCGACTCCGCCCGCGGATGCGGCC back to topCoding sequence (CDS) from alignment at H-paniculata_contig242:32246..35636- >mRNA_H-paniculata_contig242.6552.1 ID=mRNA_H-paniculata_contig242.6552.1|Name=mRNA_H-paniculata_contig242.6552.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1344bp|location=Sequence derived from alignment at H-paniculata_contig242:32246..35636- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCGATATGCACAGCGGCAGTGCATTCGAGGCCCTCTCTTTAGATAT
AGGGTCTTTCTCAATCGCGCCTTGTGTACAGGACACGGCGGGTGCGAAAC
TTGCAGTCGACATCTCCGGCAAGCTGCACGAGATGGCTCTAGCCCTGGCC
CTCAAGGGCCCGAAGCCTGAATTAATGGACACAATGAGAGTGGGTCTTCC
ACTTCAGATGGCCGATATGCACAGCGGCAGTGCATTCGAGGCCCTCTCTT
TAGATATAGGGTCTTTCTCAATCGCGCCTTGTGTACAGGACACGGCGGGT
GCGAAACTTGCAGTCGACATCTCCGGCAAGCTGCACGAGATGGCTCTAGC
CCTGGCCCTCAAGGGCCCGAAGCCTGAATTAATGGACACAATGAGAGTGG
GTCTTCCACTTCAGAAGCTGGATTTATTCCCCGTTCCCGAGAGGCGCATC
ATACTACCCGTGGACATGAAGATCAGGTACAACACCACGGTTTCCTTCCG
AGCGGACGAAGCCCCCGAGGCGATGACCACCGACCTGGTCGGTGACGTGA
TCGCGACGGAATGCAAAGGTGCCGCTGCCGCCGGCGTGGGCGATGGCATA
GGCAAGGAGACTGATGGTGTAGACGGAGAGATGCAAGAAGGACAGAAGCT
GGATTTATTCCCCGTTCCCGAGAGGCGCATCATACTACCCGTGGACATGA
AGATCAGGTACAACACCACGGTTTCCTTCCGAGCGGACGAAGCCCCCGAG
GCGATGACCACCGACCTGGTCGGTGACGTGATCGCGACGGAATGCAAAGG
TGCCGCTGCCGCCGGCGTGGGCGATGGCATAGGCAAGGAGACTGATGGTG
TAGACGGAGAGATGCAAGAAGGACAGGACGAGAAGGGCACTGAAAATATG
GCACAGATGGCGACACCGCTTACAGAAGACGAGAAGGGAGAAAATATGCA
GGGTCCATCGTCGGCCGGGCTCTACGTCGAAACGGAGATCAAACTGCACG
TGCCATCTGGTCTGCAGATAAAGGACGAGAAGGGCACTGAAAATATGGCA
CAGATGGCGACACCGCTTACAGAAGACGAGAAGGGAGAAAATATGCAGGG
TCCATCGTCGGCCGGGCTCTACGTCGAAACGGAGATCAAACTGCACGTGC
CATCTGGTCTGCAGATAAAGGTTACCGATCTCGACCTATCGGTAATTAAG
TGTACCGTGAATTCACTCCTTTCGTCACTTAGTGCGACTCCGCCCGCGGA
TGCGGCCGTTACCGATCTCGACCTATCGGTAATTAAGTGTACCGTGAATT
CACTCCTTTCGTCACTTAGTGCGACTCCGCCCGCGGATGCGGCC back to top
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