mRNA_H-paniculata_contig24182.6549.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24182.6549.1
Unique NamemRNA_H-paniculata_contig24182.6549.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig24182.6549.1 vs. uniprot
Match: A0A485KRV8_9STRA (Aste57867_11051 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KRV8_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 4.720e-8
Identity = 27/45 (60.00%), Postives = 36/45 (80.00%), Query Frame = 1
Query:   19 GSLDLDFALDLLDVADQYLVEALKRLCEHAIVKTITVRLFTVIFR 153
            GSLD+DFALDL+ VADQYL++ LKR CE AI K+I +  FT++ +
Sbjct:  481 GSLDVDFALDLISVADQYLLDNLKRKCEFAIQKSIDMSNFTIMIK 525          
BLAST of mRNA_H-paniculata_contig24182.6549.1 vs. uniprot
Match: A0A6H5JNV5_9PHAE (BTB domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNV5_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 1.630e-7
Identity = 26/51 (50.98%), Postives = 37/51 (72.55%), Query Frame = 1
Query:   13 GGGSLDLDFALDLLDVADQYLVEALKRLCEHAIVKTITVRLFTVIFREREG 165
            G  SLDL+F LDL+D++DQYL+ +LKRLCE A+++ ITV+    +F   E 
Sbjct:  271 GADSLDLEFCLDLMDLSDQYLMGSLKRLCEDAVLRNITVKNACELFVTAEA 321          
BLAST of mRNA_H-paniculata_contig24182.6549.1 vs. uniprot
Match: A0A7S2RFP8_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RFP8_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 4.230e-7
Identity = 28/44 (63.64%), Postives = 35/44 (79.55%), Query Frame = 1
Query:   22 SLDLDFALDLLDVADQYLVEALKRLCEHAIVKTITVRLFTVIFR 153
            ++DLDFALDLL +ADQ+LVE LK LCE +I K+ITV    V+FR
Sbjct:  517 TVDLDFALDLLVLADQFLVERLKTLCEISIQKSITVENVAVMFR 560          
BLAST of mRNA_H-paniculata_contig24182.6549.1 vs. uniprot
Match: UPI0010AAA02E (ARM REPEAT PROTEIN INTERACTING WITH ABF2-like isoform X1 n=2 Tax=Malus domestica TaxID=3750 RepID=UPI0010AAA02E)

HSP 1 Score: 52.4 bits (124), Expect = 2.030e-6
Identity = 26/51 (50.98%), Postives = 34/51 (66.67%), Query Frame = 1
Query:   13 GGGSLDLDFALDLLDVADQYLVEALKRLCEHAIVKTITVRLFTVIFREREG 165
            G   +++D A DLL  ADQYL+E LKRLCEHAIV+ I V   +++F   E 
Sbjct:  605 GSVDVNMDIAQDLLRAADQYLLEGLKRLCEHAIVQDICVENLSLMFEFSEA 655          
BLAST of mRNA_H-paniculata_contig24182.6549.1 vs. uniprot
Match: A0A498K8W3_MALDO (BTB domain-containing protein n=1 Tax=Malus domestica TaxID=3750 RepID=A0A498K8W3_MALDO)

HSP 1 Score: 52.4 bits (124), Expect = 2.040e-6
Identity = 26/51 (50.98%), Postives = 34/51 (66.67%), Query Frame = 1
Query:   13 GGGSLDLDFALDLLDVADQYLVEALKRLCEHAIVKTITVRLFTVIFREREG 165
            G   +++D A DLL  ADQYL+E LKRLCEHAIV+ I V   +++F   E 
Sbjct:  605 GSVDVNMDIAQDLLRAADQYLLEGLKRLCEHAIVQDICVENLSLMFEFSEA 655          
BLAST of mRNA_H-paniculata_contig24182.6549.1 vs. uniprot
Match: A0A540MKJ4_MALBA (BTB domain-containing protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540MKJ4_MALBA)

HSP 1 Score: 52.0 bits (123), Expect = 2.790e-6
Identity = 26/51 (50.98%), Postives = 34/51 (66.67%), Query Frame = 1
Query:   13 GGGSLDLDFALDLLDVADQYLVEALKRLCEHAIVKTITVRLFTVIFREREG 165
            G  ++++D A DLL  ADQYL+E LKRLCEHAIV+ I V   + +F   E 
Sbjct:  607 GSVNVNMDIAQDLLRAADQYLLEGLKRLCEHAIVQDICVENLSFMFEFSEA 657          
BLAST of mRNA_H-paniculata_contig24182.6549.1 vs. uniprot
Match: A0A8K0DT87_9ROSA (Uncharacterized protein n=1 Tax=Rhamnella rubrinervis TaxID=2594499 RepID=A0A8K0DT87_9ROSA)

HSP 1 Score: 51.6 bits (122), Expect = 3.800e-6
Identity = 25/51 (49.02%), Postives = 33/51 (64.71%), Query Frame = 1
Query:   13 GGGSLDLDFALDLLDVADQYLVEALKRLCEHAIVKTITVRLFTVIFREREG 165
            G   +D+D A DLL  ADQYL+E LKRLCEHAI + I+    +V++   E 
Sbjct:  657 GSIGVDIDIAQDLLMAADQYLLEGLKRLCEHAIAQNISAENVSVLYELSEA 707          
BLAST of mRNA_H-paniculata_contig24182.6549.1 vs. uniprot
Match: A0A7S2B942_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B942_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 4.710e-6
Identity = 26/35 (74.29%), Postives = 29/35 (82.86%), Query Frame = 1
Query:   25 LDLDFALDLLDVADQYLVEALKRLCEHAIVKTITV 129
            L +DFAL LL VADQYLVEALKR CE +I K+ITV
Sbjct:   53 LSIDFALSLLAVADQYLVEALKRKCEVSIQKSITV 87          
BLAST of mRNA_H-paniculata_contig24182.6549.1 vs. uniprot
Match: A0A498ILU7_MALDO (BTB domain-containing protein n=1 Tax=Malus domestica TaxID=3750 RepID=A0A498ILU7_MALDO)

HSP 1 Score: 51.2 bits (121), Expect = 5.220e-6
Identity = 28/51 (54.90%), Postives = 34/51 (66.67%), Query Frame = 1
Query:   19 GSLD--LDFALDLLDVADQYLVEALKRLCEHAIVKTITVRLFTVIFREREG 165
            GS+D  LD A DLL  ADQYL+E LKRLCEHAI + I V   +++F   E 
Sbjct:  607 GSVDVTLDIAQDLLRAADQYLLEGLKRLCEHAIAQDICVENLSLMFELSEA 657          
BLAST of mRNA_H-paniculata_contig24182.6549.1 vs. uniprot
Match: A0A7S2V1B2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1B2_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 7.090e-6
Identity = 26/36 (72.22%), Postives = 31/36 (86.11%), Query Frame = 1
Query:   22 SLDLDFALDLLDVADQYLVEALKRLCEHAIVKTITV 129
            S+DL FALDLL +ADQ+LVEALKR CE AI K+I+V
Sbjct:  478 SVDLGFALDLLTLADQFLVEALKRRCETAIQKSISV 513          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24182.6549.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A485KRV8_9STRA4.720e-860.00Aste57867_11051 protein n=1 Tax=Aphanomyces stella... [more]
A0A6H5JNV5_9PHAE1.630e-750.98BTB domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S2RFP8_9STRA4.230e-763.64Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
UPI0010AAA02E2.030e-650.98ARM REPEAT PROTEIN INTERACTING WITH ABF2-like isof... [more]
A0A498K8W3_MALDO2.040e-650.98BTB domain-containing protein n=1 Tax=Malus domest... [more]
A0A540MKJ4_MALBA2.790e-650.98BTB domain-containing protein n=1 Tax=Malus baccat... [more]
A0A8K0DT87_9ROSA3.800e-649.02Uncharacterized protein n=1 Tax=Rhamnella rubriner... [more]
A0A7S2B942_9STRA4.710e-674.29Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A498ILU7_MALDO5.220e-654.90BTB domain-containing protein n=1 Tax=Malus domest... [more]
A0A7S2V1B2_9STRA7.090e-672.22Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24182contigH-paniculata_contig24182:281..448 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size168
Cds size168
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929696.6083114-CDS-H-paniculata_contig24182:280..4481622929696.6083114-CDS-H-paniculata_contig24182:280..448Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24182 281..448 -
1691480971.0719242-CDS-H-paniculata_contig24182:280..4481691480971.0719242-CDS-H-paniculata_contig24182:280..448Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24182 281..448 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24182.6549.1prot_H-paniculata_contig24182.6549.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24182 281..448 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24182.6549.1

>prot_H-paniculata_contig24182.6549.1 ID=prot_H-paniculata_contig24182.6549.1|Name=mRNA_H-paniculata_contig24182.6549.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=56bp
MALGGGGSLDLDFALDLLDVADQYLVEALKRLCEHAIVKTITVRLFTVIF
REREG*
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mRNA from alignment at H-paniculata_contig24182:281..448-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24182.6549.1 ID=mRNA_H-paniculata_contig24182.6549.1|Name=mRNA_H-paniculata_contig24182.6549.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=168bp|location=Sequence derived from alignment at H-paniculata_contig24182:281..448- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCCTTGGCGGAGGTGGTTCTTTGGATCTAGACTTCGCCCTCGATCT ACTAGACGTTGCCGACCAGTACCTGGTGGAGGCGCTGAAACGACTTTGCG AACACGCTATCGTTAAGACCATCACGGTGAGATTATTTACGGTAATATTT CGAGAAAGAGAGGGATAG
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Coding sequence (CDS) from alignment at H-paniculata_contig24182:281..448-

>mRNA_H-paniculata_contig24182.6549.1 ID=mRNA_H-paniculata_contig24182.6549.1|Name=mRNA_H-paniculata_contig24182.6549.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=336bp|location=Sequence derived from alignment at H-paniculata_contig24182:281..448- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCCTTGGCGGAGGTGGTTCTTTGGATCTAGACTTCGCCCTCGATCT
ACTAGACGTTGCCGACCAGTACCTGGTGGAGGCGCTGAAACGACTTTGCG
AACACGCTATCGTTAAGACCATCACGGTGAGATTATTTACGGTAATATTT
CGAGAAAGAGAGGGATAGATGGCCCTTGGCGGAGGTGGTTCTTTGGATCT
AGACTTCGCCCTCGATCTACTAGACGTTGCCGACCAGTACCTGGTGGAGG
CGCTGAAACGACTTTGCGAACACGCTATCGTTAAGACCATCACGGTGAGA
TTATTTACGGTAATATTTCGAGAAAGAGAGGGATAG
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