mRNA_H-paniculata_contig24118.6529.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24118.6529.1
Unique NamemRNA_H-paniculata_contig24118.6529.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig24118.6529.1 vs. uniprot
Match: A0A6H5JZ81_9PHAE (Tafazzin family protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JZ81_9PHAE)

HSP 1 Score: 175 bits (443), Expect = 4.740e-51
Identity = 91/171 (53.22%), Postives = 107/171 (62.57%), Query Frame = 1
Query:    1 LLPEGHCEQDGALGGRAAGPNRDKHGRLKWGVGKLIAHAAVPPLVIPIFHTGMANVIPLNPFTRKMIHPIPRTGKTVTARAGAAIHFDDLLEAH---------------------------------------------GIAGDKVWKSTAEERQLYSSITRRIEEALLEL 378
            + PEGHCEQ G+LGGRAAG  RD+HGRLKWGVGK+IAHA V P+VIP+FHTGMAN++P+NP TRK++H +PR G TVTARAG AI FDDLLE H                                             G  GD +W+ST EERQLYS I RR+EEALL+L
Sbjct:  186 IFPEGHCEQGGSLGGRAAGAGRDEHGRLKWGVGKMIAHAPVTPVVIPLFHTGMANLVPINPLTRKILHALPRMGHTVTARAGRAITFDDLLEDHERRHGRLRKLALPPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGEGDVLWRSTREERQLYSRIARRVEEALLQL 356          
BLAST of mRNA_H-paniculata_contig24118.6529.1 vs. uniprot
Match: F0WJG4_9STRA (Tafazzin family protein n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WJG4_9STRA)

HSP 1 Score: 113 bits (283), Expect = 6.200e-28
Identity = 65/131 (49.62%), Postives = 83/131 (63.36%), Query Frame = 1
Query:    1 LLPEGHCEQDGALGGRAAGPNRDKHGRLKWGVGKLIAHAAVPPLVIPIFHTGMANVIPLNPFTRKMIHPIPRTGKTVTARAGAAIHFDDLLEAHGIAGDKV-----WKSTAEERQLYSSITRRIEEALLEL 378
            + PEG   QDG+LGGR  G +RDK GRLKWGVGKLIA A  PP+VIPI+H  M  ++P +    ++I+ +PRT   V  R G  I F+DL + +     K      W S  +E+ LYS+ITRRIEEALL L
Sbjct:  185 IFPEGKITQDGSLGGRE-GADRDKIGRLKWGVGKLIARADTPPVVIPIYHFNMNKLMPQDE-NNEVINVLPRTNNEVFVRVGQPIDFEDLFQEYEKERVKASNASSWDSEEKEKVLYSAITRRIEEALLNL 313          
BLAST of mRNA_H-paniculata_contig24118.6529.1 vs. uniprot
Match: A0A835ZF50_9STRA (Tafazzin family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF50_9STRA)

HSP 1 Score: 112 bits (281), Expect = 7.390e-28
Identity = 62/138 (44.93%), Postives = 83/138 (60.14%), Query Frame = 1
Query:    1 LLPEGHCEQDGALGGRAAGPNRDKHGRLKWGVGKLIAHAAVPPLVIPIFHTGMANVIPLNPFTRKMIHPIPRTGKTVTARAGAAIHFDDLLEAHGIAGDKVWK---------------STAEERQLYSSITRRIEEAL 369
            + PEG   Q G +GGR  G N  + G LKWGVGKLIAHA V P ++PI+HTGM NV+P +P TR ++ P P TG  +T R G  I  DDL+E +  A   +WK               S+++E  LY++ITRR++ AL
Sbjct:  126 IFPEGRTVQLGHMGGRM-GKNEAEIGTLKWGVGKLIAHAPVRPEIVPIYHTGMQNVVPEHPVTRDVLSPKPGTGHEITFRVGHPIVVDDLIEQYEKANGPLWKYTPSVAKDPPRFSWRSSSKELALYAAITRRVQTAL 262          
BLAST of mRNA_H-paniculata_contig24118.6529.1 vs. uniprot
Match: A0A485K8L0_9STRA (Tafazzin family protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K8L0_9STRA)

HSP 1 Score: 113 bits (283), Expect = 7.900e-28
Identity = 69/133 (51.88%), Postives = 85/133 (63.91%), Query Frame = 1
Query:    1 LLPEGHCEQDGALGGRAAGPNRDKHGRLKWGVGKLIAHAAVPPLVIPIFHTGMANVIPLNPFTRKMIHPIPRTGKTVTARAGAAIHFDDLLEAH------GIAGDK-VWKSTAEERQLYSSITRRIEEALLEL 378
            + PEG   Q GALGGR  GP     GRLKWGVGKLIA A V P+V+PI+H GM +V+P      K+   IPRTG+ V A  G  I+FDDL + +      GI+GD   W S  +E++LYS+ITRRIE ALL L
Sbjct:  187 VFPEGKIVQGGALGGRD-GPTATTIGRLKWGVGKLIARADVTPVVLPIYHLGMDHVMPQTQH-HKLRSIIPRTGQRVHALVGDPIYFDDLFQKYEADRRQGISGDGYTWDSDEQEKKLYSAITRRIELALLAL 317          
BLAST of mRNA_H-paniculata_contig24118.6529.1 vs. uniprot
Match: A0A024T9Q2_9STRA (Tafazzin family protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024T9Q2_9STRA)

HSP 1 Score: 113 bits (283), Expect = 8.310e-28
Identity = 68/133 (51.13%), Postives = 84/133 (63.16%), Query Frame = 1
Query:    1 LLPEGHCEQDGALGGRAAGPNRDKHGRLKWGVGKLIAHAAVPPLVIPIFHTGMANVIPLNPFTRKMIHPIPRTGKTVTARAGAAIHFDDLLEAH------GIAGDK-VWKSTAEERQLYSSITRRIEEALLEL 378
            + PEG   Q GALGGR  GP     GRLKWGVGKLIA A + P+V+PI+H GM  V+P      K+   IPR G+ V    G+ I+FDDL + +      GIAGD   W+S A E++LYS+ITRRIE ALL L
Sbjct:  187 IFPEGKIVQGGALGGRD-GPEATTIGRLKWGVGKLIARAEITPVVLPIYHVGMDKVMPQTA-EHKLKSVIPRVGQRVHVVVGSPIYFDDLFKKYEADRRQGIAGDGFTWESGAAEKKLYSAITRRIELALLAL 317          
BLAST of mRNA_H-paniculata_contig24118.6529.1 vs. uniprot
Match: W4G9P0_9STRA (Tafazzin family protein n=7 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G9P0_9STRA)

HSP 1 Score: 112 bits (280), Expect = 2.140e-27
Identity = 65/133 (48.87%), Postives = 84/133 (63.16%), Query Frame = 1
Query:    1 LLPEGHCEQDGALGGRAAGPNRDKHGRLKWGVGKLIAHAAVPPLVIPIFHTGMANVIPLNPFTRKMIHPIPRTGKTVTARAGAAIHFDDLLEAH------GIAGDK-VWKSTAEERQLYSSITRRIEEALLEL 378
            + PEG   Q G LGGR  GP+    GRLKWGVGKLIA A + P+V+PI+H GM  V+P  P   K+   +PR G+ V    G+ I+FDDL + +      G+ GD   W+S A E++LYS+ITRRIE ALL L
Sbjct:  187 IFPEGKIVQGGGLGGRD-GPDAATIGRLKWGVGKLIARAEITPVVLPIYHVGMDKVMPQTP-DHKLKSIVPRLGQRVHVLVGSPIYFDDLFKKYEADRRQGVQGDGFTWESDAAEKKLYSAITRRIELALLAL 317          
BLAST of mRNA_H-paniculata_contig24118.6529.1 vs. uniprot
Match: A0A5D6XH08_9STRA (Tafazzin family protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XH08_9STRA)

HSP 1 Score: 108 bits (270), Expect = 4.450e-26
Identity = 59/129 (45.74%), Postives = 79/129 (61.24%), Query Frame = 1
Query:    1 LLPEGHCEQDGALGGRAAGPNRDKHGRLKWGVGKLIAHAAVPPLVIPIFHTGMANVIPLNPFTRKMIHPIPRTGKTVTARAGAAIHFDDLLEA---HGIAGDKVWKSTAEERQLYSSITRRIEEALLEL 378
            + PEG   Q   LGGR + P R++ GRLKWGV KLIA A V P+V+P +H  M  V+P N    ++I  +P TG  V+ R G  + FDDL +A     + G   W++   ER LY +IT+RIE+ALLEL
Sbjct:  183 IFPEGKICQQEVLGGRES-PRREEIGRLKWGVAKLIARARVRPVVVPFYHHNMERVMPQNA-QNQLISMVPTTGNDVSVRVGVPLSFDDLFDAFEKERVVGAAPWRTQERERALYQAITKRIEDALLEL 309          
BLAST of mRNA_H-paniculata_contig24118.6529.1 vs. uniprot
Match: A0A024GSB4_9STRA (PlsC domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GSB4_9STRA)

HSP 1 Score: 110 bits (276), Expect = 8.220e-26
Identity = 64/131 (48.85%), Postives = 81/131 (61.83%), Query Frame = 1
Query:    1 LLPEGHCEQDGALGGRAAGPNRDKHGRLKWGVGKLIAHAAVPPLVIPIFHTGMANVIPLNPFTRKMIHPIPRTGKTVTARAGAAIHFDDLLEAHGIAGDKV-----WKSTAEERQLYSSITRRIEEALLEL 378
            + PEG   QDG+LGGR  GP+RDK GRLKWGVGKLIA A   P+VIPI+H  M  ++P +    ++I+ +PR    V  R G  I F+DL   +     K      W S  +E+ LYS+ITRRIEEALL L
Sbjct:  509 IFPEGKITQDGSLGGRE-GPDRDKIGRLKWGVGKLIARADTTPVVIPIYHVNMNKLMPQDE-NNEVINVLPRANNHVFVRVGQPIDFEDLFREYEKERVKASNAASWDSEEKEKILYSAITRRIEEALLNL 637          
BLAST of mRNA_H-paniculata_contig24118.6529.1 vs. uniprot
Match: K3WZT1_GLOUD (Tafazzin family protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WZT1_GLOUD)

HSP 1 Score: 107 bits (267), Expect = 1.290e-25
Identity = 57/129 (44.19%), Postives = 82/129 (63.57%), Query Frame = 1
Query:    1 LLPEGHCEQDGALGGRAAGPNRDKHGRLKWGVGKLIAHAAVPPLVIPIFHTGMANVIPLNPFTRKMIHPIPRTGKTVTARAGAAIHFDDLLEAHG---IAGDKVWKSTAEERQLYSSITRRIEEALLEL 378
            + PEG   Q+  LGGR + P R++ GRLKWGVGKLIA A+V P+V+P +H  M  V+P N    ++I  +P+T   +  R G  I FDDL +A+    + G   W++   E+ L+ +IT+RIE+ALLEL
Sbjct:  183 IFPEGKIVQNEMLGGRES-PRREEIGRLKWGVGKLIARASVRPVVVPFYHHNMEKVMPQNE-KNQLISVVPKTNVDIRVRVGEPISFDDLFDAYEKSRVVGATPWQTQEREKALFQAITKRIEDALLEL 309          
BLAST of mRNA_H-paniculata_contig24118.6529.1 vs. uniprot
Match: A0A8K1FKE6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FKE6_PYTOL)

HSP 1 Score: 107 bits (267), Expect = 1.810e-25
Identity = 60/130 (46.15%), Postives = 79/130 (60.77%), Query Frame = 1
Query:    1 LLPEGHCEQDGALGGRAAGPNRDKHGRLKWGVGKLIAHAAVPPLVIPIFHTGMANVIPLNPFTRKMIHPIPRTGKTVTARAGAAIHFDDLLEAHG----IAGDKVWKSTAEERQLYSSITRRIEEALLEL 378
            + PEG  EQ   LGGR+ GP   + GRLKWGVGKL+A A V P+V+PI+HT M  ++P +     +I  IP+ G  +T R G  I FDDL E H     +     W++   E  LYS+IT RIEE+LL+L
Sbjct:  206 IFPEGKIEQRMILGGRS-GPRTKEIGRLKWGVGKLVARADVRPVVVPIYHTNMQKIMPQDE-DNHIISMIPQFGANITIRVGKPISFDDLFEKHRDGRVVGSVAEWETQEREEALYSAITMRIEESLLDL 333          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24118.6529.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JZ81_9PHAE4.740e-5153.22Tafazzin family protein n=2 Tax=Ectocarpus TaxID=2... [more]
F0WJG4_9STRA6.200e-2849.62Tafazzin family protein n=1 Tax=Albugo laibachii N... [more]
A0A835ZF50_9STRA7.390e-2844.93Tafazzin family protein n=1 Tax=Tribonema minus Ta... [more]
A0A485K8L0_9STRA7.900e-2851.88Tafazzin family protein n=1 Tax=Aphanomyces stella... [more]
A0A024T9Q2_9STRA8.310e-2851.13Tafazzin family protein n=2 Tax=Aphanomyces invada... [more]
W4G9P0_9STRA2.140e-2748.87Tafazzin family protein n=7 Tax=Aphanomyces astaci... [more]
A0A5D6XH08_9STRA4.450e-2645.74Tafazzin family protein n=1 Tax=Pythium brassicum ... [more]
A0A024GSB4_9STRA8.220e-2648.85PlsC domain-containing protein n=1 Tax=Albugo cand... [more]
K3WZT1_GLOUD1.290e-2544.19Tafazzin family protein n=1 Tax=Globisporangium ul... [more]
A0A8K1FKE6_PYTOL1.810e-2546.15Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24118contigH-paniculata_contig24118:600..1088 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score172.6
Seed ortholog evalue1.2e-40
Seed eggNOG ortholog2880.D7FH08
KEGG rclassRC00004,RC00037
KEGG koko:K13511
KEGG ReactionR09037
KEGG Pathwayko00564,map00564
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cardiolipin acyl-chain remodeling
EggNOG OGsKOG2847@1,KOG2847@2759
Ec32 ortholog descriptionAcyltransferase, putative
Ec32 orthologEc-26_003030.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01004
Exons2
Model size378
Cds size378
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929694.1418936-CDS-H-paniculata_contig24118:599..8811622929694.1418936-CDS-H-paniculata_contig24118:599..881Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24118 600..881 +
1691480970.0654736-CDS-H-paniculata_contig24118:599..8811691480970.0654736-CDS-H-paniculata_contig24118:599..881Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24118 600..881 +
1622929694.1731558-CDS-H-paniculata_contig24118:992..10881622929694.1731558-CDS-H-paniculata_contig24118:992..1088Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24118 993..1088 +
1691480970.0817595-CDS-H-paniculata_contig24118:992..10881691480970.0817595-CDS-H-paniculata_contig24118:992..1088Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24118 993..1088 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24118.6529.1prot_H-paniculata_contig24118.6529.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24118 600..1088 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24118.6529.1

>prot_H-paniculata_contig24118.6529.1 ID=prot_H-paniculata_contig24118.6529.1|Name=mRNA_H-paniculata_contig24118.6529.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=126bp
LLPEGHCEQDGALGGRAAGPNRDKHGRLKWGVGKLIAHAAVPPLVIPIFH
TGMANVIPLNPFTRKMIHPIPRTGKTVTARAGAAIHFDDLLEAHGIAGDK
VWKSTAEERQLYSSITRRIEEALLEL
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mRNA from alignment at H-paniculata_contig24118:600..1088+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24118.6529.1 ID=mRNA_H-paniculata_contig24118.6529.1|Name=mRNA_H-paniculata_contig24118.6529.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=489bp|location=Sequence derived from alignment at H-paniculata_contig24118:600..1088+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCCTCCCAGAGGGCCATTGCGAGCAAGACGGGGCTCTCGGGGGCCGAGC CGCGGGTCCCAACCGCGACAAGCACGGGCGACTCAAGTGGGGCGTCGGCA AGCTCATCGCCCACGCGGCCGTGCCCCCGCTAGTGATCCCTATATTCCAC ACGGGCATGGCCAATGTCATACCGCTCAACCCCTTCACCCGAAAAATGAT CCACCCGATCCCGAGGACCGGCAAAACCGTCACTGCGCGGGCCGGTGCCG CTATCCACTTCGACGATCTTTTGGAAGCACACGTCAAGGCTCATGGGCCA CTCAGAAAGCTCGAGTCGATAGAAGAAGGAACAGGAGGAGAAGCCGGTGA CGACCGTGAGGGTAGTAATAGGGGTGGTGTTGTCATCCCCCAGGGGATAG CGGGAGATAAAGTGTGGAAGTCGACAGCTGAAGAACGACAGCTGTACAGC AGCATCACGCGAAGGATAGAAGAGGCGCTACTTGAGTTA
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Coding sequence (CDS) from alignment at H-paniculata_contig24118:600..1088+

>mRNA_H-paniculata_contig24118.6529.1 ID=mRNA_H-paniculata_contig24118.6529.1|Name=mRNA_H-paniculata_contig24118.6529.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at H-paniculata_contig24118:600..1088+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCCTCCCAGAGGGCCATTGCGAGCAAGACGGGGCTCTCGGGGGCCGAGC
CGCGGGTCCCAACCGCGACAAGCACGGGCGACTCAAGTGGGGCGTCGGCA
AGCTCATCGCCCACGCGGCCGTGCCCCCGCTAGTGATCCCTATATTCCAC
ACGGGCATGGCCAATGTCATACCGCTCAACCCCTTCACCCGAAAAATGAT
CCACCCGATCCCGAGGACCGGCAAAACCGTCACTGCGCGGGCCGGTGCCG
CTATCCACTTCGACGATCTTTTGGAAGCACACCTCCTCCCAGAGGGCCAT
TGCGAGCAAGACGGGGCTCTCGGGGGCCGAGCCGCGGGTCCCAACCGCGA
CAAGCACGGGCGACTCAAGTGGGGCGTCGGCAAGCTCATCGCCCACGCGG
CCGTGCCCCCGCTAGTGATCCCTATATTCCACACGGGCATGGCCAATGTC
ATACCGCTCAACCCCTTCACCCGAAAAATGATCCACCCGATCCCGAGGAC
CGGCAAAACCGTCACTGCGCGGGCCGGTGCCGCTATCCACTTCGACGATC
TTTTGGAAGCACACGGGATAGCGGGAGATAAAGTGTGGAAGTCGACAGCT
GAAGAACGACAGCTGTACAGCAGCATCACGCGAAGGATAGAAGAGGCGCT
ACTTGAGTTAGGGATAGCGGGAGATAAAGTGTGGAAGTCGACAGCTGAAG
AACGACAGCTGTACAGCAGCATCACGCGAAGGATAGAAGAGGCGCTACTT
GAGTTA
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