mRNA_H-paniculata_contig24091.6523.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig24091.6523.1 vs. uniprot
Match: D7FL89_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL89_ECTSI) HSP 1 Score: 120 bits (302), Expect = 1.200e-25 Identity = 109/398 (27.39%), Postives = 165/398 (41.46%), Query Frame = 1
Query: 1 WRFGVLVRVDHD----YEESRLRLDYSTDKKELVVAVWGDLTKAVAWAIICCVCTVVRKMTLQFPGLRWDASLGCPDHPEKVMGISEVQRMGDRLIDNRNICRTCRMAGKGAGILASELLEVVDMSNDAGQVLQRVVGRVSESQRANLNSCGNASSSDFQAAVHSDVDS---EVLEEMREELRSLRSSMPSMEEVKNVVEESQKTNTLETKAMMXXXXXXXXXXXXXXXXXXXXLSAQL-------RGVARKLAVLTVRI----------PSHVVLLPPRQ-NESEALREEEREERNWTKRLKTWYNESKKAGKGKIMKEFRLFFLCGHDNSLAECGLEGKGYRIEIPRTWVKKSVPFAKALLVVLNITLKSFAGLSIPIEDIAGADEQSLGKVFSSI 1119
WRFGVLV+ + L ++YS D E+ + V+G + A WA + +V + M +FPGLRW ASL CP H + + R GD+L+ C C G G A +LLE+VD+ G +++ V R+ ++Q C A+ + H D+ V E++ LR R PS E + ++ + +L GV +L L V + P +LPP + L +E+ W KRL W + K GKG K+ RLF +C + L CG G+GY I+ PRTW + SV A +L V+ TL + A + P+ E++ S+
Sbjct: 742 WRFGVLVQGSLGGGMAAKTFALLIEYSHDTCEVDMEVYGSIRTAAPWAALSYGISVFQAMCSEFPGLRWRASLKCPQHEQDMQISRTATRRGDKLLHGAT-CNLCDSETGGLGAAAIDLLEMVDIRRSRGDLVRAVNRRLVKAQGRYPVLCLGATRALHPELAHRLSDAWWEGVKEDISGILRGARG--PSDGEAVASTASVASDEMARLERLVTDLQQQVGRQHQDVREQIGAVDTRLVDMIDADDGVMGRLDFLVVMMMAMRRDGFETPRRACVLPPWNFAQGHGLSAKEQAPERWVKRLGQWREDDFKQGKGVFKKKMRLFLVCAATHRLVPCGPNGQGYDIQHPRTWFRMSVSVATFVLQVVCATLAAIA--AAPLSGAGALAEETFSAALGSM 1134
BLAST of mRNA_H-paniculata_contig24091.6523.1 vs. uniprot
Match: D7FL98_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL98_ECTSI) HSP 1 Score: 118 bits (296), Expect = 7.120e-25 Identity = 108/398 (27.14%), Postives = 161/398 (40.45%), Query Frame = 1
Query: 1 WRFGVLVRVDHD----YEESRLRLDYSTDKKELVVAVWGDLTKAVAWAIICCVCTVVRKMTLQFPGLRWDASLGCPDHPEKVMGISEVQRMGDRLIDNRNICRTCRMAGKGAGILASELLEVVDMSNDAGQVLQRVVGRVSESQRANLNSCGNASSSDFQAAVHSDVDS---EVLEEMREELRSLRSSMPSMEEVKNVVEESQKTNTLETKAMMXXXXXXXXXXXXXXXXXXXXLSAQL-------RGVARKLAVLTVRI----------PSHVVLLPPRQ-NESEALREEEREERNWTKRLKTWYNESKKAGKGKIMKEFRLFFLCGHDNSLAECGLEGKGYRIEIPRTWVKKSVPFAKALLVVLNITLKSFAGLSIPIEDIAGADEQSLGKVFSSI 1119
WRFGVLV+ L ++YS DK E+ + V+G ++ A WA + +V + M +FPGLRW A+L CP H + + R GD+ + C C G G A LLE+VD+ ++ Q V GR+ ++Q A+ D+ V EEM + LR R P E + ++ + +L GV +L L V + P +LPP + L +EE+ W KRL W + K GKG + RLF +C + L CG G+GY I+ PRTW + SV A +L V+ TL + A + P+ E++ S+
Sbjct: 778 WRFGVLVQGSLGGGIAARTFALVVEYSHDKCEVDMKVYGSISTAAPWAALSFGISVFQAMCSEFPGLRWRAALKCPQHEQDMQISKAATRPGDKSLFGAT-CSLCDSKTGGLGAAAMSLLEIVDVHECVDKIFQEVAGRLVQAQDRYPVLRPEAARGLHPEQAQRRFDAWWDGVKEEMGDMLRGARG--PIGGEAAGSTASVASAEVARLERLVNDLQQQVGQQHQDVRERIGAVDTRLVDMIDADDGVMGRLDFLVVMMMAMRREGFDTPRRACVLPPWDFAQGHGLSDEEQAPDCWVKRLGQWREDDFKQGKGVFKTKMRLFLVCAATHRLVPCGPNGQGYDIQHPRTWFRMSVSVATFVLQVVCATLAAIA--AAPLSGAGALAEETFSAALGSM 1170
BLAST of mRNA_H-paniculata_contig24091.6523.1 vs. uniprot
Match: A0A6H5JME6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME6_9PHAE) HSP 1 Score: 117 bits (292), Expect = 2.380e-24 Identity = 99/375 (26.40%), Postives = 156/375 (41.60%), Query Frame = 1
Query: 1 WRFGVLVRVDHDYEES----RLRLDYSTDKKELVVAVWGDLTKAVAWAIICCVCTVVRKMTLQFPGLRWDASLGCPDHPEKVMGISEVQRMGDRLIDNRNICRTCRMAGKGAGILASELLEVVDMSNDAGQVLQRVVGRVSESQRA----------NLNS-----------CGNASSSDFQAAVHSDVDSEVLEEMREELRSLRSSMPSMEEVKNVVEESQKTNTLETKAMMXXXXXXXXXXXXXXXXXXXXLSAQLRGVARKLAVLTVRIPSHVVLLPPRQ-NESEALREEEREERNWTKRLKTWYNESKKAGKGKIMKEFRLFFLCGHDNSLAECGLEGKGYRIEIPRTWVKKSVPFAKALLVVLNITLKSFA 1047
WRFGVLV+ + + + ++YS E+ + V+G++ WA + + VR M FPGLRW ASL CP+H + + + R GD+L+ C C G G A+ELL++VD+ + ++ + V GR + QR NS G + DV R ++ + + + ++ ++ + N + + + L A L V + + P +LP +S L E E+ W KRL W + K GKG K+ RLF LC H + L CG +G+GY I+ RTW +KS+ L V+ TL + A
Sbjct: 880 WRFGVLVQGNMGGVTAGKTFAMLVEYSHKGSEIDIKVYGNIATTAPWAALSLGISAVRVMCSAFPGLRWCASLKCPEHKQDMPISNTATRPGDKLLLEHG-CTLCSSETGGVGAAATELLQMVDVLQNRDKMFREVHGRFVDLQRQYPVLRPEKSREFNSEQARRRFETWLTGMREEAAGLLRGGGDVGESTKAGERGDISGVSDDVAKLPQLVGHLQHQLEQNQKDVRGWLGEVLEAIVDADAGAMKQREFLVAMLMKVRSE----GIDTPRQACVLPEWNFAQSHGLSEHEQTPEVWVKRLHEWREDDFKQGKGVFWKKKRLFLLCAHTHRLVPCGPKGQGYDIQQLRTWARKSISATAFALQVVCSTLAAMA 1249
BLAST of mRNA_H-paniculata_contig24091.6523.1 vs. uniprot
Match: D7FZA1_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZA1_ECTSI) HSP 1 Score: 97.1 bits (240), Expect = 8.610e-18 Identity = 110/366 (30.05%), Postives = 166/366 (45.36%), Query Frame = 1
Query: 1 WRFGVLVRVDHDYEESR----LRLDYSTDKKELVVAVWGDLTKAVAWAIICCVCTVVRKMTLQFPGLRWDASLGCPDHPEKVMGISEVQRMGDRLIDNRNICRTCRMAGKGAGILASELLEVVDMSNDAGQVLQRVVGR--VSESQRANLNSCGNASSSDFQAAVHSDVDSEVLEEMREELRSLRSSMPSMEEVKNVVEESQKTNTLETKAMMXXXXXXXXXXXXXXXXXXXXLSAQLRGVARKLAVL-TVRIPSHVV--LLPPRQNESEALREEEREERNWTKRLKTWYNESKKAGKGKIMKEFRLFFLCGHDNSLAECGLEGKGYRIEIPRTWVKKSVPFAKALLVVLNITLKSFAGLSIPIED 1071
WR+GVLV + R + +YS+ EL ++GD++ + W + V + V M + FPGLRW+ SL CP H ++ ++V GD+ ++ R C C +G G A +L+ +VD+ D G + + V R V ESQ +C SS+D V M+EV KA XXXXXXXXXXXXXXXXX L L LA L ++ P++ L+ ++ S + +++ +L+ G GK K+ RL FLC D + CG G+GY+ + R WVK+ P + +V + L + GL++ I D
Sbjct: 613 WRYGVLVHGGLGDLDGRGIFAVVTEYSSTNNELTAQIFGDISTSAPWVALSYVTSAVSLMLMDFPGLRWNGSLKCPQHGYEMPFATKVNCAGDKFLERR--CPRCSPQTRGLGAAAIDLIRMVDIRLDRGVIDREVKARFDVLESQYF---TCPAGSSTDEDEFVR-----------------------KMDEV---------------KAEXXXXXXXXXXXXXXXXXXAGRLDKVLESTQESLARLKNLQAPNYHYPRLVVVKEVGSHGTSSKAHGKKSMLSKLR---------GLGK--KDMRLHFLCPVDMTTVPCGYGGEGYQFQETRAWVKRVSPALQVTVVTAKVALNAVTGLNVDISD 924
BLAST of mRNA_H-paniculata_contig24091.6523.1 vs. uniprot
Match: D7FUH6_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUH6_ECTSI) HSP 1 Score: 92.0 bits (227), Expect = 3.840e-16 Identity = 66/188 (35.11%), Postives = 94/188 (50.00%), Query Frame = 1
Query: 694 LRGVARKLAVLTVRIPSHVVLLPPRQNESEALREEEREERNWTKRLKTWY----------NESKKAG---------KGKIMKEFRLFFLCGHDNSLAECGLEGKGYRIEIPRTWVKKSVPFAKALLVVLNITLKSFAGLSIPIEDIAGADEQSLGKVFSSIMEDAAETLIEQACSAGEERLDEVRATG 1200
L GVAR++A+L IP V +LP R L E +R W+ LK W N ++K +G + +E RLFFLCG D SLAECG +G+GY ++ WV+K+ P AK L + +I LK GL++ + A S + S+ +EDA IE S RLD ++ +G
Sbjct: 876 LVGVAREVAILRWPIPRFVCVLPARDTR---LSESDRSFEKWSTALKEWCASKSPAKDAKNPNRKTSILGLNKPQLRGLVTRELRLFFLCGQDKSLAECGPDGQGYEVKEFLDWVRKAAPAAKIGLALASIALKVCTGLAVSTDTFEAAFGTS--EDMSAFVEDALSAGIEGTTSKAGNRLDRLQNSG 1058
BLAST of mRNA_H-paniculata_contig24091.6523.1 vs. uniprot
Match: D7G431_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G431_ECTSI) HSP 1 Score: 80.9 bits (198), Expect = 1.540e-12 Identity = 44/139 (31.65%), Postives = 70/139 (50.36%), Query Frame = 1
Query: 1 WRFGVLVRVDHDYEESR----LRLDYSTDKKELVVAVWGDLTKAVAWAIICCVCTVVRKMTLQFPGLRWDASLGCPDHPEKVMGISEVQRMGDRLIDNRNICRTCRMAGKGAGILASELLEVVDMSNDAGQVLQRVVGR 405
WR+GVLV R + L+YS+ +L ++GD+ W + V + V M + FPGLRW +L CP H + ++ ++V + G+ + R C C KG G A +LL +VD+ D G++ V+ R
Sbjct: 633 WRYGVLVHGGLGDLGGRGIFAVVLEYSSTDHKLNGQIFGDIGTPAPWVALSYVMSAVSLMLVDFPGLRWGGALKCPQHGDAMLMANKVTQAGETFLKRR--CPRCSTETKGLGAAAIDLLRMVDIRMDRGEIFDEVMER 769
BLAST of mRNA_H-paniculata_contig24091.6523.1 vs. uniprot
Match: A0A6H5KM56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM56_9PHAE) HSP 1 Score: 60.8 bits (146), Expect = 2.520e-6 Identity = 30/88 (34.09%), Postives = 48/88 (54.55%), Query Frame = 1
Query: 1 WRFGVLVRVD-HDYEESRLR---LDYSTDKKELVVAVWGDLTKAVAWAIICCVCTVVRKMTLQFPGLRWDASLGCPDHPEKVMGISEV 252
W++GVLV D+E + L+YS+ EL ++GD++ W + V + V M + FPGLRW+ SL CP H ++ ++V
Sbjct: 414 WQYGVLVHGGLGDFEGREIFATVLEYSSTDNELSARIFGDISTPAPWTALSYVMSAVILMLVDFPGLRWEGSLKCPQHGNAMLLANQV 501 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24091.6523.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig24091.6523.1 >prot_H-paniculata_contig24091.6523.1 ID=prot_H-paniculata_contig24091.6523.1|Name=mRNA_H-paniculata_contig24091.6523.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=431bp WRFGVLVRVDHDYEESRLRLDYSTDKKELVVAVWGDLTKAVAWAIICCVCback to top mRNA from alignment at H-paniculata_contig24091:1072..3699- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig24091.6523.1 ID=mRNA_H-paniculata_contig24091.6523.1|Name=mRNA_H-paniculata_contig24091.6523.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2628bp|location=Sequence derived from alignment at H-paniculata_contig24091:1072..3699- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig24091:1072..3699- >mRNA_H-paniculata_contig24091.6523.1 ID=mRNA_H-paniculata_contig24091.6523.1|Name=mRNA_H-paniculata_contig24091.6523.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2586bp|location=Sequence derived from alignment at H-paniculata_contig24091:1072..3699- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |