mRNA_H-paniculata_contig24072.6516.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24072.6516.1
Unique NamemRNA_H-paniculata_contig24072.6516.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig24072.6516.1 vs. uniprot
Match: D8LBX8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBX8_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 6.000e-24
Identity = 46/54 (85.19%), Postives = 52/54 (96.30%), Query Frame = 3 
Query:    3 FIWMEIAAQALTFKAGELEPVFCSLTLFRIVSKIGKKGAEVELSRSGRVSETFW 164
            F+WMEIAAQALTFK G LEPVFCSLTL+RIVS++GKKGAE++LSRSGRVSETFW
Sbjct:  146 FMWMEIAAQALTFKVGALEPVFCSLTLYRIVSRLGKKGAEMDLSRSGRVSETFW 199
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BLAST of mRNA_H-paniculata_contig24072.6516.1 vs. uniprot
Match: A0A836CP33_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP33_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 4.570e-9
Identity = 28/53 (52.83%), Postives = 36/53 (67.92%), Query Frame = 3 
Query:    3 FIWMEIAAQALTFKAGELEPVFCSLTLFRIVSKIGKKGAEVELSRSGRVSETF 161
            F W+++    L F  GE EP+FCSLT++RI  K  KKG E++   SGRVSETF
Sbjct:  135 FTWLKVDCNKLVFGVGEPEPLFCSLTMYRIEGKPTKKGFELDRRNSGRVSETF 187
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BLAST of mRNA_H-paniculata_contig24072.6516.1 vs. uniprot
Match: D8LBX9_ECTSI (Similar to dedicator of cytokinesis n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBX9_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 2.520e-8
Identity = 34/52 (65.38%), Postives = 36/52 (69.23%), Query Frame = 3 
Query:  141 GRVSETFWFDLNSGAVRRKFSYVFTRESPIGDPDGIAVLPTTSKILSGSSTR 296
            G   E F FDLNS  VRRKFSYVFTRESP G PD IA   T S  ++GSSTR
Sbjct:   40 GPKREHFRFDLNSSTVRRKFSYVFTRESPTGAPDDIA---TPSISVTGSSTR 88
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24072.6516.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LBX8_ECTSI6.000e-2485.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CP33_9STRA4.570e-952.83Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
D8LBX9_ECTSI2.520e-865.38Similar to dedicator of cytokinesis n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24072contigH-paniculata_contig24072:890..3459 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSimilar to dedicator of cytokinesis
Ec32 orthologEc-20_003690.3
Exons2
Model size336
Cds size324
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24072.6516.1prot_H-paniculata_contig24072.6516.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24072 901..3459 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929691.3816223-UTR-H-paniculata_contig24072:889..9001622929691.3816223-UTR-H-paniculata_contig24072:889..900Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24072 890..900 +
1691480969.1827536-UTR-H-paniculata_contig24072:889..9001691480969.1827536-UTR-H-paniculata_contig24072:889..900Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24072 890..900 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929691.4038885-CDS-H-paniculata_contig24072:900..10521622929691.4038885-CDS-H-paniculata_contig24072:900..1052Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24072 901..1052 +
1691480969.1918383-CDS-H-paniculata_contig24072:900..10521691480969.1918383-CDS-H-paniculata_contig24072:900..1052Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24072 901..1052 +
1622929691.427605-CDS-H-paniculata_contig24072:3287..34591622929691.427605-CDS-H-paniculata_contig24072:3287..3459Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24072 3288..3459 +
1691480969.2008214-CDS-H-paniculata_contig24072:3287..34591691480969.2008214-CDS-H-paniculata_contig24072:3287..3459Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24072 3288..3459 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24072.6516.1

>prot_H-paniculata_contig24072.6516.1 ID=prot_H-paniculata_contig24072.6516.1|Name=mRNA_H-paniculata_contig24072.6516.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=108bp
MEIAAQALTFKAGELEPVFCSLTLFRIVSKIGKKGAEVELSRSGRVSETF
WFDLNSGAVRRKFSYVFTRESPIGDPDGIAVLPTTSKILSGSSTRTSTRT
GSGGGGGG
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mRNA from alignment at H-paniculata_contig24072:890..3459+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24072.6516.1 ID=mRNA_H-paniculata_contig24072.6516.1|Name=mRNA_H-paniculata_contig24072.6516.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2570bp|location=Sequence derived from alignment at H-paniculata_contig24072:890..3459+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTTCATATGGATGGAGATCGCAGCGCAGGCTCTCACCTTCAAAGCGGGC
GAGCTGGAGCCGGTGTTCTGTTCGCTGACGCTATTTCGAATAGTGTCCAA
GATAGGGAAGAAGGGGGCCGAGGTCGAACTCTCTCGGAGCGGGCGGGTAT
CGGAAACGTTTTGGTGAGAGTCGAGTGAGTTAGTTGCCTTGATGCGCTAG
GACATACTATGATTTAGTTCCGTAATTTTTAGCGCCTTTTCAAAAAGACT
GTTTTCTGAACAAAATATGGTCATCCGACAGCTCATGTCGACGCTGCATT
CATATAAAAAATCGAATCATAACATCATTCAAATCCCAACATTTTTTAGG
AATCAAAATTGCAAGCTAGTTAACCCTTTAAGTGTCGTCTAACCCATTTT
ACAGTTTGTGGGCCTCGCTGTAGTCGGTGTGTTGTTTTGCTGATTGGTCG
GCGGTGGGCACATAATACGGGCACGTTCAAATCGGGGCGTAATATCACAT
GGTTGACGTCTTATGAATCAAAATTGCAAAGCTAGTCTGCAAGTATTGCA
CCTCCCCCCCCCCCCGGACAATCACGAATAATTGGCGTATTCGCTACGAA
AATTAAAAAGTATTCGCCTCAGTTTCACAATGAGCCGACAGATAATGATA
AAGTACCCACCCCTGTTCATTCGATTTACGAGTATTATTAGCAGTCGTGG
ATGGCCTGGGGCAGATAGAACCCACGAGCTCGTTCTGAAGCTCAGGCGAA
TACTTTCAGTTTTTTGTGAAAACCATTTGCAACTATTCGTATTTGTCCGT
GGCGTGAAGTATTGCCTGACGGGTTTTCGAGAAGATTTTGAACGCAGGAT
GTGGTTTTACCAGTACAATACTGCAAAATGCTACGAAATACGAGGGGGCC
GTACCTTTTTTTTGAACTAAACATGTGTTTTTTTCACTGTTTCGACAGTA
TGAGCTAATACTTGCGCGTAGGCCCACCGGAGGGCAAGCTACATTGGTCA
CAGCGCCCGAAACTAAGCTTACCAGCACCCAGCAACAAGTGGCGACGATT
AATAACTGATTATTTTAGCACGTCCTGCAATGCTGTACTGTATAGGGTAG
GGTTTTATCCACTCTCTTGGGCAGGTGGCTGCACATTGACCCTAAATGCG
GTGAGATCTTAATTGCGCATACACTAGTCTCTCAGACCCGCTGTCACAAG
CTTGCCGTTTCTCACAAGTAGTGCTGTGTATAGCCCGCGTTTATGGATAA
GAAAAATATTTTGTGTGCGTCTTGGGGTCTGTAATGGTCGTGCTTGTTTT
ATAAAGGGTACACGAGTCACTTTGTCCCCTCTCTTTTTTAGCTAAAAACG
GTTTTTGGGCCATGAATATCGAACTGAGAGATACGGATCGTCTTGAAAAA
AATAGGTGGAATAAAATTACTTCATCTTATACGAGTTGATTAACACTTGC
AGGGTACCTTGCAATTCTGGTAGTCCTGATTTCCTGTTTTTGTATTGCTC
AGGTGTTGGATTATAACTATTTTTTATCTTACGTTGAGTGGAAAATGACC
ATAGGATCGCGCCAAATACCGATATATCTTTTTTTTTATTCAACCAATGT
CAAAAACGTGGCTATGTATCAATACATCGCTAGTTGTACCGACACTTACA
CAAAGCCCTGTTTTTTTCTAGTTTTTTCTGGTGACCTTCCCTTAAAACAA
TCACGATGCTGAGTAATGATTCTCTTCTTACCGTTTCTCCTTGTTCGACC
GCGATGTTTTGTACAGCTATATGGTGCATATTTGCTCTCTAGTGGAGAGT
GCGTTCCTGGGGTTACTGGGGTTCCCGAACCCTGATCCCAGTGGTATCTC
TGTCCAATTTCGGATTTAACAGTTGACCCTGCCACACAGACTAGTGGAGT
GGGTGCTTGGCAGTACACCCCAAAATCAGAACCAATGGGCAGAGCGGGCG
TTGCTCTCTCTCTCTCTCTCTCTCCCGCTCATGAAGGCACCTTGTTTCCA
CCCTTTTTTTTGTTTTATTCAATTGTTATATTAAAATTAGGATATAAAAT
AGATAACCCCCCCCTCGCGCCTACCGAATTCCAACCCCCCTTCCGATTCA
GTTCCAAAATTTCACAATAGGGTGTTGGGGGCAAAACGAACTCGAGATAC
ATTGGTGCAGGTGGACTGGGGTCCGGAACGAGGAAGAAACTGTTAGCCAT
ACACGACCAAACGGAAATTTGCTAAAGGAATTCGTTTTGCGCAAACACGA
AAATAACTTGTATGTAAATTTCCAATTTGTGGGATTCGGTTCTCTTTCGA
TTTTAAATATGTCTGAACCAATTGACCACCCTTGAGTGCAGCCGACCGTA
CAACATACAACGCTAAACAACCACAGCACGAACTCCACTATTGAACAGGT
TTGACCTCAATTCCGGAGCAGTCCGTAGGAAATTCTCCTACGTATTCACC
CGCGAGTCTCCCATCGGAGACCCGGACGGTATAGCCGTCCTCCCGACCAC
CTCCAAAATCCTCTCGGGGTCGTCCACGCGGACCTCTACGAGGACGGGCA
GCGGCGGTGGCGGCGGTGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig24072:890..3459+

>mRNA_H-paniculata_contig24072.6516.1 ID=mRNA_H-paniculata_contig24072.6516.1|Name=mRNA_H-paniculata_contig24072.6516.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=648bp|location=Sequence derived from alignment at H-paniculata_contig24072:890..3459+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGATCGCAGCGCAGGCTCTCACCTTCAAAGCGGGCGAGCTGGAGCC
GGTGTTCTGTTCGCTGACGCTATTTCGAATAGTGTCCAAGATAGGGAAGA
AGGGGGCCGAGGTCGAACTCTCTCGGAGCGGGCGGGTATCGGAAACGTTT
TGATGGAGATCGCAGCGCAGGCTCTCACCTTCAAAGCGGGCGAGCTGGAG
CCGGTGTTCTGTTCGCTGACGCTATTTCGAATAGTGTCCAAGATAGGGAA
GAAGGGGGCCGAGGTCGAACTCTCTCGGAGCGGGCGGGTATCGGAAACGT
TTTGGTTTGACCTCAATTCCGGAGCAGTCCGTAGGAAATTCTCCTACGTA
TTCACCCGCGAGTCTCCCATCGGAGACCCGGACGGTATAGCCGTCCTCCC
GACCACCTCCAAAATCCTCTCGGGGTCGTCCACGCGGACCTCTACGAGGA
CGGGCAGCGGCGGTGGCGGCGGTGGGGTTTGACCTCAATTCCGGAGCAGT
CCGTAGGAAATTCTCCTACGTATTCACCCGCGAGTCTCCCATCGGAGACC
CGGACGGTATAGCCGTCCTCCCGACCACCTCCAAAATCCTCTCGGGGTCG
TCCACGCGGACCTCTACGAGGACGGGCAGCGGCGGTGGCGGCGGTGGG
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