prot_H-paniculata_contig24056.6512.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig24056.6512.1
Unique Nameprot_H-paniculata_contig24056.6512.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length205
Homology
BLAST of mRNA_H-paniculata_contig24056.6512.1 vs. uniprot
Match: A0A6H5JPV6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPV6_9PHAE)

HSP 1 Score: 157 bits (397), Expect = 7.830e-41
Identity = 82/208 (39.42%), Postives = 127/208 (61.06%), Query Frame = 0
Query:    3 LKKSIYGLRQSPNVWNHTIDNELRSMGFTPTISDPCIYSKGSNDTYIMLSLFVDDILITGPTDKLLMDVRNQLMNKFTITDLGEVSLILGMEVLRNRQEGTLQLSQYKYVLSVLERFGMSSANPTKTPGVKTDPTTTGEDSTLLDTAATKE---------STTGTMFFLANGLVHFSSRLQKITATSTTEAELIALAACAKQGTYLLN 201
            L+KS+YG+ QSP++WN  I++ L   G+  T SDPC+Y   S D   +L+++VDDILITG   +++   + +LM+ F +TD+GEV  ++G+EV R+ + GTL +SQ  Y   +L+R+GM  ANP  TPG   + +T      LL    T+          STTG +FFL  GL+ + ++ + + A +T EAEL AL+  A++  Y+ N
Sbjct:  140 LEKSLYGMSQSPSLWNDAINDRLIIFGWQRTRSDPCVYIFVSGDELTILTIYVDDILITGGNKEIVSRKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEDTQRFQAIIGSLLSTTGYLFFLGGGLISYGAKARTLAAQNTVEAELQALSFSAREAVYISN 347          
BLAST of mRNA_H-paniculata_contig24056.6512.1 vs. uniprot
Match: A0A6H5KAK0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAK0_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 3.970e-35
Identity = 70/163 (42.94%), Postives = 105/163 (64.42%), Query Frame = 0
Query:    3 LKKSIYGLRQSPNVWNHTIDNELRSMGFTPTISDPCIYSKGSNDTYIMLSLFVDDILITGPTDKLLMDVRNQLMNKFTITDLGEVSLILGMEVLRNRQEGTLQLSQYKYVLSVLERFGMSSANPTKTPGVKTDPTTTGEDSTLLDTAATK--ESTTGTMFFLA 163
            L +S+YGL QSP +WN T+D  L   G+  T SDPC+Y   S +  ++L+++VDDILITG   +L+   + +L ++F +TD+GEV  ILG++V R+ ++GTL +SQ  YV ++LERFGM  ANP  TPG   + +T      +L     K  +S TG++ +LA
Sbjct:    5 LARSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKNYQSMTGSILYLA 167          
BLAST of mRNA_H-paniculata_contig24056.6512.1 vs. uniprot
Match: A0A6H5KRT7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRT7_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 5.880e-35
Identity = 69/163 (42.33%), Postives = 105/163 (64.42%), Query Frame = 0
Query:    3 LKKSIYGLRQSPNVWNHTIDNELRSMGFTPTISDPCIYSKGSNDTYIMLSLFVDDILITGPTDKLLMDVRNQLMNKFTITDLGEVSLILGMEVLRNRQEGTLQLSQYKYVLSVLERFGMSSANPTKTPGVKTDPTTTGEDSTLLDTAATK--ESTTGTMFFLA 163
            L++S+YGL QSP +W+ T+D  L   G+  T SDPC+Y   S +  ++L+++VDDILITG   +L+   + +L ++F +TD+GEV  ILG++V R+ ++GTL +SQ  YV ++LERFGM  ANP  TPG   +  T      +L     K  +S TG++ +LA
Sbjct:    5 LERSLYGLSQSPALWSDTLDKSLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGRDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNALLERFGMQEANPVSTPGYGAEIYTDQPQDQILGPTDMKIYQSMTGSILYLA 167          
BLAST of mRNA_H-paniculata_contig24056.6512.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 6.310e-35
Identity = 71/168 (42.26%), Postives = 105/168 (62.50%), Query Frame = 0
Query:    1 MSLKKSIYGLRQSPNVWNHTIDNELRSMGFTPTISDPCIYSKGSNDTYIMLSLFVDDILITGPTDKLLMDVRNQLMNKFTITDLGEVSLILGMEVLRNRQEGTLQLSQYKYVLSVLERFGMSSANPTKTPGVKTDPTTTGEDSTLLDTAATK--ESTTGTMFFLANGL 166
            M L+KS+YGL QSP+ W HTID  L  +GF P  SD C+Y    +D  + L+L+VDD+L+ G   + +  ++ +L  +F +TD+GEV L+LGME+ R+R +GTL +SQ  Y  S+LERFGMS   PT TPG  ++ +    + TLL    T+  +   G + ++A  L
Sbjct:  602 MQLQKSLYGLAQSPSNWFHTIDPFLVEIGFVPLKSDTCVYLYDHDDVQVYLTLYVDDLLLAGNNSRAISMIKKKLTQRFKMTDMGEVKLVLGMEIKRDRNQGTLTISQEAYSKSILERFGMSECKPTSTPGYGSELSNKQPEDTLLSEEETRRYQGIVGCLIYIAQVL 769          
BLAST of mRNA_H-paniculata_contig24056.6512.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 9.570e-35
Identity = 72/168 (42.86%), Postives = 103/168 (61.31%), Query Frame = 0
Query:    1 MSLKKSIYGLRQSPNVWNHTIDNELRSMGFTPTISDPCIYSKGSNDTYIMLSLFVDDILITGPTDKLLMDVRNQLMNKFTITDLGEVSLILGMEVLRNRQEGTLQLSQYKYVLSVLERFGMSSANPTKTPGVKTDPTTTGEDSTLLDTAATK--ESTTGTMFFLANGL 166
            M L KS+YGL QSP  W +TID  +  +GF    SDPC+Y    N   I L+L+VDD+L+ G     +  V+ +L  +F +TDLGE SL+LGME+ R+R+  TL +SQ  Y  S+LERFGMS + PT TPG  ++ +    + TLLD   T+  +   G++ ++A  L
Sbjct:   65 MKLNKSLYGLAQSPGNWFNTIDPVIVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVL 232          
BLAST of mRNA_H-paniculata_contig24056.6512.1 vs. uniprot
Match: A0A6H5KL30_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL30_9PHAE)

HSP 1 Score: 138 bits (347), Expect = 4.400e-34
Identity = 68/152 (44.74%), Postives = 98/152 (64.47%), Query Frame = 0
Query:    1 MSLKKSIYGLRQSPNVWNHTIDNELRSMGFTPTISDPCIYSKGSNDTYIMLSLFVDDILITGPTDKLLMDVRNQLMNKFTITDLGEVSLILGMEVLRNRQEGTLQLSQYKYVLSVLERFGMSSANPTKTPGVKTDPTTTGEDSTLLDTAATK 152
            M L+KS+YGL QSP+ W HTID  L  +GF P  SD C+Y    +D  + L+L+VDD+L+ G    +++ ++N+L  +  +TD+GEV L+LGME+ R+R +GTL  SQ  Y  S+LERFGMS   PT TPG  ++ +    + TLL    T+
Sbjct:  901 MQLQKSLYGLAQSPSNWFHTIDPFLVEIGFVPLQSDTCVYLYDHDDVQVFLTLYVDDLLLAGNNANVMLMIKNKLKQRSKMTDMGEVKLVLGMEIKRDRNQGTLTTSQEAYSKSILERFGMSERKPTSTPGYGSELSNKQPEDTLLGEEETR 1052          
BLAST of mRNA_H-paniculata_contig24056.6512.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 6.230e-34
Identity = 71/153 (46.41%), Postives = 96/153 (62.75%), Query Frame = 0
Query:    1 MSLKKSIYGLRQSPNVWNHTIDNELRSMGFTPTISDPCIYSKGSNDTYIMLSLFVDDILITGPTDKLLMDVRNQLMNKFTITDLGEVSLILGMEVLRNRQEGTLQLSQYKYVLSVLERFGMSSANPTKTPGVKTDPTTTGEDSTLLDTAATKE 153
            M L KS+YGL QSP  W +TID  L  +GF    SDPC+Y    N   I L+L+VDD+L+ G     +  V+ +L  +F +TDLGE SL+LGME+ R+R+  TL +SQ  Y  S+LERFGMS + PT TPG  ++ +    D TLLD   T++
Sbjct: 1459 MKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPDYTLLDEKETRK 1611          
BLAST of mRNA_H-paniculata_contig24056.6512.1 vs. uniprot
Match: A0A7N2M938_QUELO (Uncharacterized protein n=1 Tax=Quercus lobata TaxID=97700 RepID=A0A7N2M938_QUELO)

HSP 1 Score: 137 bits (344), Expect = 1.070e-33
Identity = 76/197 (38.58%), Postives = 116/197 (58.88%), Query Frame = 0
Query:    3 LKKSIYGLRQSPNVWNHTIDNELRSMGFTPTISDPCIYSKGSNDTYIMLSLFVDDILITGPTDKLLMDVRNQLMNKFTITDLGEVSLILGMEVLRNRQEGTLQLSQYKYVLSVLERFGMSSANPTKTPGVKTDPTTTGEDSTLLDTAATKESTTGTMFFLANGLVHFSSRLQKITATSTTEAELIALAACAKQGTYL 199
            L+KS+Y L+Q+P  W    D+ +  +GF    +D C Y K S+++YI+L L+VDD+LITG + + + +++ QL  +F + DLG    IL M ++RN+  GTL+LSQ +YV  VL RF M+ A P  TP   +       D+       +++STTG +F L    + ++S LQKI   STTEAE +A     K+  +L
Sbjct:  725 LRKSLYALKQAPRQWYKKFDSFMHRIGFKRCEADHCCYVKFSDNSYIILLLYVDDMLITGSSIEEVNNLKKQLSKQFAMKDLGAAKQILSMRIIRNKANGTLKLSQLEYVKKVLSRFNMNEAKPMSTPLGASLKLQGYVDTDFAGDINSRKSTTGFVFTLGGTAISWASNLQKIVTLSTTEAEYVAATEAGKEIIWL 921          
BLAST of mRNA_H-paniculata_contig24056.6512.1 vs. uniprot
Match: A0A6H5KUJ3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUJ3_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 1.100e-33
Identity = 69/163 (42.33%), Postives = 105/163 (64.42%), Query Frame = 0
Query:    3 LKKSIYGLRQSPNVWNHTIDNELRSMGFTPTISDPCIYSKGSNDTYIMLSLFVDDILITGPTDKLLMDVRNQLMNKFTITDLGEVSLILGMEVLRNRQEGTLQLSQYKYVLSVLERFGMSSANPTKTPGVKTDPTTTGEDSTLLDTAATK--ESTTGTMFFLA 163
            L++S+YGL QSP +WN T+D  L   G+  T SDPC+Y   + +  ++L+++VDDILITG   +L+   + +L ++F +TD+GEV  ILG+ V R+ ++GTL +SQ  YV ++LERFGM  ANP  TPG   + +T      +L     K  +S TG++ +LA
Sbjct:    5 LERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTTGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIGVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTEKKNYQSMTGSILYLA 167          
BLAST of mRNA_H-paniculata_contig24056.6512.1 vs. uniprot
Match: A0A6H5KXM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXM1_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 1.910e-33
Identity = 63/131 (48.09%), Postives = 87/131 (66.41%), Query Frame = 0
Query:    1 MSLKKSIYGLRQSPNVWNHTIDNELRSMGFTPTISDPCIYSKGSNDTYIMLSLFVDDILITGPTDKLLMDVRNQLMNKFTITDLGEVSLILGMEVLRNRQEGTLQLSQYKYVLSVLERFGMSSANPTKTPG 131
            M L+KS+YGL QSP+ W HTID  L  +GF P  SD C+Y    +D  + L+L+VDD+L+ G     +  ++ +L  +F +TD+GEV L+LGME+ R+R +G L +SQ  Y  S+LERFGMS   PT TPG
Sbjct:  713 MQLQKSLYGLAQSPSNWFHTIDPFLVEIGFVPLKSDTCVYLYDHDDVQVYLTLYVDDLLLAGNNSNAISMIKKKLKQRFKMTDMGEVKLVLGMEIKRDRNQGALTISQEAYTKSILERFGMSECKPTSTPG 843          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24056.6512.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JPV6_9PHAE7.830e-4139.42Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KAK0_9PHAE3.970e-3542.94Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KRT7_9PHAE5.880e-3542.33Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KL37_9PHAE6.310e-3542.26Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L5U2_9PHAE9.570e-3542.86Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KL30_9PHAE4.400e-3444.74Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5J842_9PHAE6.230e-3446.41Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A7N2M938_QUELO1.070e-3338.58Uncharacterized protein n=1 Tax=Quercus lobata Tax... [more]
A0A6H5KUJ3_9PHAE1.100e-3342.33Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KXM1_9PHAE1.910e-3348.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 2..130
e-value: 6.8E-31
score: 107.8
NoneNo IPR availablePANTHERPTHR45895FAMILY NOT NAMEDcoord: 3..155
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 4..111

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24056contigH-paniculata_contig24056:1802..2644 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24056.6512.1mRNA_H-paniculata_contig24056.6512.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig24056 1676..2875 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig24056.6512.1 ID=prot_H-paniculata_contig24056.6512.1|Name=mRNA_H-paniculata_contig24056.6512.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=205bp
MSLKKSIYGLRQSPNVWNHTIDNELRSMGFTPTISDPCIYSKGSNDTYIM
LSLFVDDILITGPTDKLLMDVRNQLMNKFTITDLGEVSLILGMEVLRNRQ
EGTLQLSQYKYVLSVLERFGMSSANPTKTPGVKTDPTTTGEDSTLLDTAA
TKESTTGTMFFLANGLVHFSSRLQKITATSTTEAELIALAACAKQGTYLL
NICR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2