mRNA_H-paniculata_contig24056.6512.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24056.6512.1
Unique NamemRNA_H-paniculata_contig24056.6512.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig24056.6512.1 vs. uniprot
Match: A0A6H5JPV6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPV6_9PHAE)

HSP 1 Score: 233 bits (594), Expect = 2.830e-66
Identity = 129/333 (38.74%), Postives = 197/333 (59.16%), Query Frame = 1
Query:    4 WAVFALDVQVAFLNGELQESVYCKQAPGFEKTHPTTGQPYVMSLKKSIYGLRQSPNVWNHTIDNELRSMGFTPTISDPCIYSKGSNDTYIMLSLFVDDILITGPTDKLLMDVRNQLMNKFTITDLGEVSLILGMEVLRNRQEGTLQLSQYKYVLSVLERFGMSSANPTKTPGVKTDPTTTGEDSTLLDTAATKE---------STTGTMFFLANGLVHFSSRLQKITATSTTEAELIALAACAKQGTYLLNICR*LGFQ-LDNFEVRSDNMGALHLAANSNYSNRSKHIAIRFEALRDWIRSNQLVIDHVASADQLADILTKHCERVVFTQLR 972
            W V+ LDV  AFLN      VY + APG E+  PTTG+  V  L+KS+YG+ QSP++WN  I++ L   G+  T SDPC+Y   S D   +L+++VDDILITG   +++   + +LM+ F +TD+GEV  ++G+EV R+ + GTL +SQ  Y   +L+R+GM  ANP  TPG   + +T      LL    T+          STTG +FFL  GL+ + ++ + + A +T EAEL AL+  A++  Y+ N    +GF+   +  + SD+ GAL +A+N+ +S+R+KHIA+RF  LR+  + + + + H  SA  + D   +   R  F  LR
Sbjct:   97 WEVYQLDVVAAFLNAYTDRDVYVRPAPGDEERDPTTGEMMVYKLEKSLYGMSQSPSLWNDAINDRLIIFGWQRTRSDPCVYIFVSGDELTILTIYVDDILITGGNKEIVSRKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEDTQRFQAIIGSLLSTTGYLFFLGGGLISYGAKARTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFETFRSVPINSDSTGALTVASNAMFSSRTKHIALRF-FLRELTKGHWITLHHRHSATMIPDSEDRKRSREEFVALR 428          
BLAST of mRNA_H-paniculata_contig24056.6512.1 vs. uniprot
Match: A0A6H5K9R3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9R3_9PHAE)

HSP 1 Score: 207 bits (528), Expect = 3.400e-57
Identity = 141/382 (36.91%), Postives = 202/382 (52.88%), Query Frame = 1
Query:    4 WAVFALDVQVAFLNGELQESVYCKQAPGFEKTHPTTGQPYVMSLKKSIYGLRQSPNVWNHTIDNELRSMGFTPTISDPCIYSKGSNDTYIMLSLFVDDILITGPTDKLLMDVRNQLMNKFTITDLGEVSLILGMEVLRNRQEGTLQLSQYKYVLSVLERFGMSSANPTKTPGVKTDPTTTGEDSTLLDTAATK--ESTTGTMFFLA-----------NGLVHFSSR------------LQKITAT------------------------------STT----EAELIALAACAKQGTYLLNICR*LGFQ-LDNFEVRSDNMGALHLAANSNYSNRSKHIAIRFEALRDWIRSNQLVIDHVASADQLADILTKHCERVVFTQL 969
            W V+ +DV VAFL   + + V+ K APG +   P TG   V  L++S+YGL QSP +W  TID  L  +GF PT SDPC+Y  GS DT ++L+L+V+DILI+G    L+ D++ +L ++F ITD+GEV LILGM+V R+ + GTL +SQ  YV S+LE  GM + NP   P  +           LL  A +K  +S TG++ +LA           N L    S+            L+ I  T                              STT    E+EL A++  AK+  YL ++   L F+ L    + SD+ G L LAAN+ +S+R+KHIA+RF  L++ I+   + + HV +   LADI TKH +R  F  +
Sbjct:  483 WPVWQMDVAVAFLQPTIDKDVWVKPAPGQDAKDPATGGIMVYKLERSLYGLAQSPVLWYDTIDEVLVVIGFRPTQSDPCVYIHGSGDTLVILTLYVNDILISGKDPDLVADLKKELQDRFEITDIGEVRLILGMKVTRSYENGTLVVSQKGYVKSILESLGMENCNP---PADE-----------LLGAAESKLYQSITGSLLYLAQCKRYDQSYAVNQLTRACSKPARAHTTAAKHALRYIRGTPDLLIIFKRGRFRVAAFADSSFGAIPDNRKSTTGLQVESELQAISYGAKEAAYLSSLLMALKFENLKPISIYSDSSGTLSLAANTMFSSRTKHIALRFFVLQESIKPRHIAVHHVPTQAMLADIATKHLDRNKFNSI 850          
BLAST of mRNA_H-paniculata_contig24056.6512.1 vs. uniprot
Match: A0A6H5K066_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K066_9PHAE)

HSP 1 Score: 186 bits (471), Expect = 1.490e-52
Identity = 107/308 (34.74%), Postives = 172/308 (55.84%), Query Frame = 1
Query:    1 DWAVFALDVQVAFLNGELQESVYCKQAPGFEKTHPTTGQPYVMSLKKSIYGLRQSPNVWNHTIDNELRSMGFTPTISDPCIYSKGSNDTYIMLSLFVDDILITGPTDKLLMDVRNQLMNKFTITDLGEVSLILGMEVLRNRQEGTLQLSQYKYVLSVLERFGMSSANPTKTPGVKTDPTTTGEDSTLLDTAATKESTTGTMFFLANGLVHFSSRLQKITATSTTEAELIALAACAKQGTYLLNICR*LGFQ-LDNFEVRSDNMGALHLAANSNYSNRSKHIAIRFEALRDWIRSNQLVIDHVASADQL 921
            +W ++ LDV  AFLN      VY + APG    +  TG+P V  L++S+YGL QSP +WN T+D  L   G+  T SDPC+Y   S +  ++L+++VDDILI G   +L+   + +L ++F +TD+GEV  +LG++V RN ++GTL + +     S  +R G+          +K +  T  +D   L               LA GL+ + ++ Q +TA ST EAE+ AL   A++  Y+ N+   L F+   +  + SD+ GAL +A N+ +S R+KH+A+R+  +R+ +   Q+ + H  S  QL
Sbjct:   80 NWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILIIGGDQQLVDQKKKELTDRFEMTDMGEVKRVLGIDVQRNYEQGTLAIHR-----STTQRGGLH---------LKFNDGTQLQDLRXL---------------LAGGLISYGAKAQALTAQSTVEAEIQALGYSAREAVYISNLMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQL 358          
BLAST of mRNA_H-paniculata_contig24056.6512.1 vs. uniprot
Match: A0A6H5KL30_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL30_9PHAE)

HSP 1 Score: 196 bits (497), Expect = 1.840e-52
Identity = 120/348 (34.48%), Postives = 188/348 (54.02%), Query Frame = 1
Query:    4 WAVFALDVQVAFLNGELQESVYCKQAPGFEKTHPTTGQPYVMSLKKSIYGLRQSPNVWNHTIDNELRSMGFTPTISDPCIYSKGSNDTYIMLSLFVDDILITGPTDKLLMDVRNQLMNKFTITDLGEVSLILGMEVLRNRQEGTLQLSQYKYVLSVLERFGMSSANPTKTPGVKTDPTTTGEDSTLLDTAATK--ESTTGTMFFLANGLVHF--------------SSRLQKITA--------------TSTTEAELIALAACAKQGTYLLNICR*LGFQLDNFEVR--SDNMGALHLAANSNYSNRSKHIAIRFEALRDWIRSNQLVIDHVASADQLADILTKHCER 951
            W++F +D+  AFL  ++ E+V  +Q PGFE  +   G   VM L+KS+YGL QSP+ W HTID  L  +GF P  SD C+Y    +D  + L+L+VDD+L+ G    +++ ++N+L  +  +TD+GEV L+LGME+ R+R +GTL  SQ  Y  S+LERFGMS   PT TPG  ++ +    + TLL    T+  +   G + ++A  L +                S++  + A              T TTE +LIA     K+  +  N+   LGF  +  +V    DN   LH   N ++S+ +K IA+RF  +R+ +   ++ I ++ +   +ADI TKH  +
Sbjct:  861 WSLFQMDLSTAFLCADILENVLVEQPPGFE-VNGKDGGDLVMQLQKSLYGLAQSPSNWFHTIDPFLVEIGFVPLQSDTCVYLYDHDDVQVFLTLYVDDLLLAGNNANVMLMIKNKLKQRSKMTDMGEVKLVLGMEIKRDRNQGTLTTSQEAYSKSILERFGMSERKPTSTPGYGSELSNKQPEDTLLGEEETRRYQGIMGCLMYIAQVLRYDIMYATGQLARPMTKPSKIHMVAAKHTLRYVAGTTDLRTRTTE-KLIASVLAMKEAVFCSNMVSELGFGKEFAQVPLYCDNTATLHALGNRSFSSSTKRIALRFLYIRELVSEGRMSIHYIPTDSNIADIGTKHLNK 1206          
BLAST of mRNA_H-paniculata_contig24056.6512.1 vs. uniprot
Match: A0A438CHB0_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438CHB0_VITVI)

HSP 1 Score: 178 bits (451), Expect = 8.670e-50
Identity = 115/318 (36.16%), Postives = 171/318 (53.77%), Query Frame = 1
Query:    1 DWAVFALDVQVAFLNGELQESVYCKQAPGFEKTHPTTGQPYVMSLKKSIYGLRQSPNVWNHTIDNELRSMGFTPTISDPCIYSKGSNDTYIMLSLFVDDILITGPTDKLLMDVRNQLMNKFTITDLGEVSLILGMEVLRNRQEGTLQLSQYKYVLSVLERFGMSSANPTKTPGVKTDPTTTGE-DSTLLDTAATKESTTGTMFFLANGLVHFSSRLQKITATSTTEAELIALAACAKQGTYLLNICR*LGFQLDNFE----VRSDNMGALHLAANSNYSNRSKHIAIRFEALRDWIRSNQLVIDHVASADQLADILTK 939
            D  +  +DV+ AFLNG + E++Y  Q   FE  +    +  V  LKKSIYGL+Q+   W    D  + S GF     D CIY K S   +I+L L+VDDIL+      LL + +  L +KF + DLG+ S +LG+++ R+R  G L+LSQ  Y+  VL RFGMS+  P  T   K D  +  +     LD    + ST+  +F LA   V + S  Q + A+ST EAE IA    +  G +L N    L   +D  E    +  DN  A   + N+  S++S HI I+F  +++ ++S Q+ I+H+++   +AD LTK
Sbjct:    8 DLELHQMDVKTAFLNGNIDETIYMVQPENFESNN---SKQLVCRLKKSIYGLKQASRQWYRKFDQMITSFGFKENTVDQCIYLKFSGSKFIILVLYVDDILLASSDVGLLHETKRFLSSKFDMKDLGDASFVLGIQIYRDRPRGILRLSQKAYIDKVLSRFGMSNCAPGNTHVAKGDKFSLHQCPKNELDN---RRSTSSYIFMLAGEAVSWKSVKQTLIASSTMEAEFIACYEASNHGIWLRNFITRLRI-VDGVEKPLRINCDNKAAELYSKNNRSSSKSNHIDIKFLVVKERVQSLQVSIEHISTNSMIADPLTK 318          
BLAST of mRNA_H-paniculata_contig24056.6512.1 vs. uniprot
Match: A0A2N9GVZ5_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GVZ5_FAGSY)

HSP 1 Score: 184 bits (466), Expect = 2.490e-48
Identity = 123/367 (33.51%), Postives = 181/367 (49.32%), Query Frame = 1
Query:   19 LDVQVAFLNGELQESVYCKQAPGFEKTHPTTGQPYVMSLKKSIYGLRQSPNVWNHTIDNELRSMGFTPTISDPCIYSKGSNDTYIMLSLFVDDILITGPTDKLLMDVRNQLMNKFTITDLGEVSLILGMEVLRNRQEGTLQLSQYKYVLSVLERFGMSSANPTKTP-------------------------GVKT----------------------------------DPTTTGE-DSTLLDTAATKESTTGTMFFLANGLVHFSSRLQKITATSTTEAELIALAACAKQGTYLLNICR*LGFQLDNFEVRSDNMGALHLAANSNYSNRSKHIAIRFEALRDWIRSNQLVIDHVASADQLADILTK 939
            LDV+ AFL+G+L+E +Y  Q  GF        +  V  L+KS+YGL+Q+P  W    D+ + S GFT   +D C Y K  +++YI+L L+VDD+LI G + + + +++ QL  +F + DLG    ILGM ++R+R  GTL+LSQ +YV  +L RF M  A P  TP                         GV +                                  D   TG  DS L     T++STTG ++ L    V + SRLQKI A STTEAE +A+    K+  +L      LG +     + SD+  A+ LA N  + +R+KHI +R+  +R  +   QL ++ +  A   AD+LTK
Sbjct:  825 LDVKTAFLHGDLEEDIYMSQPQGFIVQGK---ENLVCKLRKSLYGLKQAPRQWYKKFDSFMYSTGFTRCQADHCCYVKSFDNSYIILLLYVDDMLIAGSSIEEINNLKKQLSKQFAMKDLGPAKQILGMRIIRDRANGTLKLSQTEYVKKILSRFSMDEAKPVSTPLGSHFRLTKDQSPKTEQEQALHEQVGVVSRYMSNPGKQHWEAVKWILRYLKGTLGTSLCFTGADMKLTGYVDSDLAGDVDTRKSTTGYVYTLGGTAVSWVSRLQKIVALSTTEAEYVAVTEAGKEMVWLQGFLEELGQRQKKGILHSDSQSAIFLAKNPAFHSRTKHIQLRYHFIRSLLDGGQLTLEKILGAKNPADMLTK 1188          
BLAST of mRNA_H-paniculata_contig24056.6512.1 vs. uniprot
Match: A0A2N9JBD5_FAGSY (Uncharacterized protein n=3 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9JBD5_FAGSY)

HSP 1 Score: 184 bits (466), Expect = 2.650e-48
Identity = 123/367 (33.51%), Postives = 181/367 (49.32%), Query Frame = 1
Query:   19 LDVQVAFLNGELQESVYCKQAPGFEKTHPTTGQPYVMSLKKSIYGLRQSPNVWNHTIDNELRSMGFTPTISDPCIYSKGSNDTYIMLSLFVDDILITGPTDKLLMDVRNQLMNKFTITDLGEVSLILGMEVLRNRQEGTLQLSQYKYVLSVLERFGMSSANPTKTP-------------------------GVKT----------------------------------DPTTTGE-DSTLLDTAATKESTTGTMFFLANGLVHFSSRLQKITATSTTEAELIALAACAKQGTYLLNICR*LGFQLDNFEVRSDNMGALHLAANSNYSNRSKHIAIRFEALRDWIRSNQLVIDHVASADQLADILTK 939
            LDV+ AFL+G+L+E +Y  Q  GF        +  V  L+KS+YGL+Q+P  W    D+ + S GFT   +D C Y K  +++YI+L L+VDD+LI G + + + +++ QL  +F + DLG    ILGM ++R+R  GTL+LSQ +YV  +L RF M  A P  TP                         GV +                                  D   TG  DS L     T++STTG ++ L    V + SRLQKI A STTEAE +A+    K+  +L      LG +     + SD+  A+ LA N  + +R+KHI +R+  +R  +   QL ++ +  A   AD+LTK
Sbjct:  861 LDVKTAFLHGDLEEDIYMSQPQGFIVQGK---ENLVCKLRKSLYGLKQAPRQWYKKFDSFMYSTGFTRCQADHCCYVKSFDNSYIILLLYVDDMLIAGSSIEEINNLKKQLSKQFAMKDLGPAKQILGMRIIRDRANGTLKLSQTEYVKKILSRFSMDEAKPVSTPLGSHFRLTKDQSPKTEQEQALHEQVGVVSRYMSNPGKQHWEAVKWILRYLKGTLGTSLCFTGADMKLTGYVDSDLAGDVDTRKSTTGYVYTLGGTAVSWVSRLQKIVALSTTEAEYVAVTEAGKEMVWLQGFLEELGQRQKKGILHSDSQSAIFLAKNPAFHSRTKHIQLRYHFIRSLLDGGQLTLEKILGAKNPADMLTK 1224          
BLAST of mRNA_H-paniculata_contig24056.6512.1 vs. uniprot
Match: H3HA00_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HA00_PHYRM)

HSP 1 Score: 176 bits (446), Expect = 5.500e-47
Identity = 103/321 (32.09%), Postives = 167/321 (52.02%), Query Frame = 1
Query:   19 LDVQVAFLNGELQESVYCKQAPGF-EKTHPTTGQPYVMSLKKSIYGLRQSPNVWNHTIDNELRSMGFTPTISDPCIYSKGSNDTYIMLSLFVDDILITGPTDKLLMDVRNQLMNKFTITDLGEVSLILGMEVLRNRQEGTLQLSQYKYVLSVLERFGMSSANPTKTPGVKTDPTTTGEDSTLLDTAATKESTTGTMFFLANGLVHFSSRLQKITATSTTEAELIALAACAKQGTYLLNICR*LGFQLDNFEVR--SDNMGALHLAANSNYSNRSKHIAIRFEALRDWIRSNQLVIDHVASADQLADILTKHCERVVFTQLR 972
            +DV+ AFLNG L E +Y  Q  G+ ++ HP     +V  LK+S+YGL+QSP +WN TID+ +  +GF    SD C+Y K      I ++L+VDD+++    D+LL   ++ L  +F +TDLGE+   LGME+ ++   G + + Q K+   +L+                                     T+G  F +  G + + S+ Q+  A S+TEAE +AL+   ++  +L      LG    +  V+   DN G++ LA N  +  R+KHI IR+  +R+ +   Q+V+ +V++ D LAD++TK    V F  LR
Sbjct:  268 MDVKTAFLNGVLDEDIYMAQPDGYVDEDHPD----HVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRDGQDMIFVALYVDDLVLASSNDELLESTKHALSKRFEMTDLGELEYFLGMEIEQDVVTGKMSMRQTKFAKDILQN------------------------------------TSGYAFMMNGGCISWRSKKQRTVALSSTEAEYMALSEATQEAVWLKVFLCELGEMASDEAVKIYEDNQGSIALAKNPQFHKRTKHIDIRYHFVREKVEDGQVVLQYVSTTDMLADMMTKAITAVQFQVLR 548          
BLAST of mRNA_H-paniculata_contig24056.6512.1 vs. uniprot
Match: A0A438JR94_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JR94_VITVI)

HSP 1 Score: 173 bits (438), Expect = 6.800e-47
Identity = 112/335 (33.43%), Postives = 176/335 (52.54%), Query Frame = 1
Query:   19 LDVQVAFLNGELQESVYCKQAPGFEKTHPTTGQP-YVMSLKKSIYGLRQSPNVWNHTIDNELRSMGFTPTISDPCIYSKGSNDTYIMLSLFVDDILITGPTDKLLMDVRNQLMNKFTITDLGEVSLILGMEVLRNRQEGTLQLSQYKYVLSVLERFGMSSANPTKTP---------GVKTDPT---TTGEDSTLLDTAA---------------TKESTTGTMFFLANGLVHFSSRLQKITATSTTEAELIALAACAKQGTYLLNICR*LGFQLDNFEVRSDNMGALHLAANSNYSNRSKHIAIRFEALRDWIRSNQLVIDHVASADQLADILTK 939
            LDV++AFL+G+L+E +Y  Q  GF       GQ   V  L+KS+YGL+Q+P  W    DN +  +GF    +D C Y K  +++YI+L L+VDD+LI G   + + +++ QL  +F + D G    ILGM ++R++  GTL+LSQ +YV  VL RF M+ A P  TP          V T P      G  S  +  +                +++STTG +F L    + ++S LQKI   STTEAE +      K+  +L      LG + +   + SD+  A+ LA NS + ++SKHI  ++  +R  +    ++++ +  +    D+LTK
Sbjct:   91 LDVKIAFLHGDLEEDLYMIQPEGFI----VQGQENLVCKLRKSLYGLKQAPRQWYKKFDNFMHRIGFKRCEADHCCYVKSFDNSYIILLLYVDDMLIVGSDIEKINNLKKQLSKQFAMKDSGAGKQILGMRIIRDKANGTLKLSQSEYVKKVLSRFNMNEAKPVSTPLAIGSLMYAMVCTRPDIAHVVGVVSRFISASLKLQCYVDADFAGDIDSRKSTTGFVFTLGGIAISWASNLQKIVTLSTTEAEYVVATEAGKEMIWLHGFLDELGKKQEMGILHSDSQSAIFLAQNSAFHSKSKHIQTKYHFIRYLVEDKLVILEKICGSKNPTDMLTK 421          
BLAST of mRNA_H-paniculata_contig24056.6512.1 vs. uniprot
Match: A0A5B7BAK4_DAVIN (Uncharacterized protein n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7BAK4_DAVIN)

HSP 1 Score: 177 bits (450), Expect = 3.440e-46
Identity = 124/391 (31.71%), Postives = 182/391 (46.55%), Query Frame = 1
Query:   19 LDVQVAFLNGELQESVYCKQAPGFEKTHPTTGQPYVMSLKKSIYGLRQSPNVWNHTIDNELRSMGFTPTISDPCIYSKGSNDTYIMLSLFVDDILITGPTDKLLMDVRNQLMNKFTITDLGEVSLILGMEVLRNRQEGTLQLSQYKYVLSVLERFGMSSANPTKTPGVK-------TDPTTTGE-----------------------------------------------------------------------------DSTLLDTAATKESTTGTMFFLANGLVHFSSRLQKITATSTTEAELIALAACAKQGTYLLNICR*LGFQLDNFEVRSDNMGALHLAANSNYSNRSKHIAIRFEALRDWIRSNQLVIDHVASADQLADILTK 939
            LDV+ AFL+G+L+E +Y KQ  GF  T P   +  +  L KS+YGL+Q+P  W    D  + + GFT   +D C Y K  ++ YI+L L+VDD+LI G + + + +++NQL  +F + DLG    ILGM + R+R  GTL+LSQ +YV  V+ RF M  A P  TP            P T  E                                                                             DS L      ++STTG +F L    V + SRLQKI A STTEAE +A+   +K+  +L +    LG + +N  + SD+  A+HLA NS + +R+KHI +R+  +R  +    L ++ +  +   AD+LTK
Sbjct:  896 LDVKTAFLHGDLEEDIYMKQPQGF--TAPGK-EGLICKLAKSLYGLKQAPRQWYKKFDGFMCTNGFTRCQADHCCYMKRFDNDYIILLLYVDDMLIAGSSIQEIKNLKNQLSKQFAMKDLGAAKQILGMRISRDRTAGTLKLSQAEYVKRVISRFSMQDAKPVSTPLASHFRLTKDQSPKTEEEQGYMQRVPYASAVGSLMYAMVCTRPDIAHAVGVVSRFMSNPGKKHWEAIKWILRYLKGTTDTALCFDEADMVLQGYVDSDLAGDVDNRKSTTGYVFTLGGTAVSWVSRLQKIVALSTTEAEYVAVTEASKEMVWLQSFLEELGKKWENSVLYSDSQSAIHLAKNSAFHSRTKHIQLRYHFIRSLLDDKVLSLEKIRGSQNPADMLTK 1283          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24056.6512.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JPV6_9PHAE2.830e-6638.74Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K9R3_9PHAE3.400e-5736.91Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K066_9PHAE1.490e-5234.74Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KL30_9PHAE1.840e-5234.48Integrase catalytic domain-containing protein n=1 ... [more]
A0A438CHB0_VITVI8.670e-5036.16Retrovirus-related Pol polyprotein from transposon... [more]
A0A2N9GVZ5_FAGSY2.490e-4833.51Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A2N9JBD5_FAGSY2.650e-4833.51Uncharacterized protein n=3 Tax=Fagus sylvatica Ta... [more]
H3HA00_PHYRM5.500e-4732.09Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A438JR94_VITVI6.800e-4733.43Retrovirus-related Pol polyprotein from transposon... [more]
A0A5B7BAK4_DAVIN3.440e-4631.71Uncharacterized protein n=1 Tax=Davidia involucrat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24056contigH-paniculata_contig24056:1676..2875 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.0
Seed ortholog evalue2.6e-24
Seed eggNOG ortholog164328.Phyra87462
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs3QHJF@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons2
Model size972
Cds size615
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24056.6512.1prot_H-paniculata_contig24056.6512.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24056 1802..2644 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929690.9982655-UTR-H-paniculata_contig24056:1675..18011622929690.9982655-UTR-H-paniculata_contig24056:1675..1801Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24056 1676..1801 +
1691480969.0263443-UTR-H-paniculata_contig24056:1675..18011691480969.0263443-UTR-H-paniculata_contig24056:1675..1801Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24056 1676..1801 +
1622929691.047016-UTR-H-paniculata_contig24056:2644..28751622929691.047016-UTR-H-paniculata_contig24056:2644..2875Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24056 2645..2875 +
1691480969.0598526-UTR-H-paniculata_contig24056:2644..28751691480969.0598526-UTR-H-paniculata_contig24056:2644..2875Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24056 2645..2875 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929691.0142477-CDS-H-paniculata_contig24056:1801..22591622929691.0142477-CDS-H-paniculata_contig24056:1801..2259Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24056 1802..2259 +
1691480969.0393338-CDS-H-paniculata_contig24056:1801..22591691480969.0393338-CDS-H-paniculata_contig24056:1801..2259Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24056 1802..2259 +
1622929691.031192-CDS-H-paniculata_contig24056:2487..26441622929691.031192-CDS-H-paniculata_contig24056:2487..2644Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24056 2488..2644 +
1691480969.049473-CDS-H-paniculata_contig24056:2487..26441691480969.049473-CDS-H-paniculata_contig24056:2487..2644Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24056 2488..2644 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24056.6512.1

>prot_H-paniculata_contig24056.6512.1 ID=prot_H-paniculata_contig24056.6512.1|Name=mRNA_H-paniculata_contig24056.6512.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=205bp
MSLKKSIYGLRQSPNVWNHTIDNELRSMGFTPTISDPCIYSKGSNDTYIM
LSLFVDDILITGPTDKLLMDVRNQLMNKFTITDLGEVSLILGMEVLRNRQ
EGTLQLSQYKYVLSVLERFGMSSANPTKTPGVKTDPTTTGEDSTLLDTAA
TKESTTGTMFFLANGLVHFSSRLQKITATSTTEAELIALAACAKQGTYLL
NICR*
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mRNA from alignment at H-paniculata_contig24056:1676..2875+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24056.6512.1 ID=mRNA_H-paniculata_contig24056.6512.1|Name=mRNA_H-paniculata_contig24056.6512.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1200bp|location=Sequence derived from alignment at H-paniculata_contig24056:1676..2875+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATTGGGCCGTATTCGCACTAGATGTTCAAGTGGCATTTTTAAACGGCGA ACTTCAGGAGAGCGTCTATTGCAAGCAAGCACCCGGTTTCGAGAAGACTC ACCCTACTACCGGACAGCCCTATGTGATGAGCTTGAAGAAATCAATCTAC GGACTGCGCCAAAGCCCTAATGTGTGGAATCATACAATCGACAACGAGTT GAGGAGCATGGGTTTTACACCAACTATCTCGGACCCCTGTATCTACAGCA AAGGGAGCAACGACACCTACATCATGCTCAGCTTGTTCGTCGACGATATC CTTATAACAGGACCAACGGACAAACTGCTGATGGACGTCCGTAACCAACT GATGAACAAATTCACTATCACGGACCTGGGAGAAGTGTCGCTGATACTAG GCATGGAAGTACTACGTAACAGACAAGAGGGTACTCTACAGCTGTCACAG TATAAGTACGTACTATCTGTTTTAGAGAGGTTTGGCATGTCATCAGCCAA CCCTACTAAAACACCAGGCGTGAAAACGGACCCTACTACTACTGGCGAGG ACAGCACTCTACTGGATACAGCAGCTACAAAAGAGTACCAGGCCATGGTC GGGAGCCTTATCTTCTTGACTCAGTGTACGAGATTCGACATATGCTTCAG CGTTACTCAAGCAGCACGATTCATGAGTGCACCAACTCAACAGCACCTAG TGGCAGTGAAGCGCATTCTTCGATACTTAAAAGGATACCCCGACATGCCG ATAATCTACAACAGAGGGCAACCAGCGCTTACGGGCTTTTGCGACTCATC ATACACTACAAGATCAACAACTGGTACAATGTTCTTCCTGGCAAACGGAC TTGTACACTTCTCATCCCGACTACAGAAGATCACTGCTACAAGCACTACT GAGGCGGAGCTCATCGCACTAGCTGCATGCGCTAAACAAGGGACTTACCT GCTGAACATTTGCCGATAGCTCGGTTTTCAGCTGGACAACTTTGAAGTGC GTTCGGACAACATGGGCGCGCTCCACTTAGCAGCTAATAGCAATTACTCC AACCGCAGTAAACACATCGCCATCAGGTTCGAAGCACTAAGGGACTGGAT CAGGAGCAATCAGCTTGTCATCGACCATGTAGCAAGCGCTGATCAGCTAG CTGACATCCTCACCAAGCATTGCGAGAGAGTAGTGTTCACCCAGCTGCGG
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Coding sequence (CDS) from alignment at H-paniculata_contig24056:1676..2875+

>mRNA_H-paniculata_contig24056.6512.1 ID=mRNA_H-paniculata_contig24056.6512.1|Name=mRNA_H-paniculata_contig24056.6512.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1230bp|location=Sequence derived from alignment at H-paniculata_contig24056:1676..2875+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCTTGAAGAAATCAATCTACGGACTGCGCCAAAGCCCTAATGTGTG
GAATCATACAATCGACAACGAGTTGAGGAGCATGGGTTTTACACCAACTA
TCTCGGACCCCTGTATCTACAGCAAAGGGAGCAACGACACCTACATCATG
CTCAGCTTGTTCGTCGACGATATCCTTATAACAGGACCAACGGACAAACT
GCTGATGGACGTCCGTAACCAACTGATGAACAAATTCACTATCACGGACC
TGGGAGAAGTGTCGCTGATACTAGGCATGGAAGTACTACGTAACAGACAA
GAGGGTACTCTACAGCTGTCACAGTATAAGTACGTACTATCTGTTTTAGA
GAGGTTTGGCATGTCATCAGCCAACCCTACTAAAACACCAGGCGTGAAAA
CGGACCCTACTACTACTGGCGAGGACAGCACTCTACTGGATACAGCAGCT
ACAAAAGAATGAGCTTGAAGAAATCAATCTACGGACTGCGCCAAAGCCCT
AATGTGTGGAATCATACAATCGACAACGAGTTGAGGAGCATGGGTTTTAC
ACCAACTATCTCGGACCCCTGTATCTACAGCAAAGGGAGCAACGACACCT
ACATCATGCTCAGCTTGTTCGTCGACGATATCCTTATAACAGGACCAACG
GACAAACTGCTGATGGACGTCCGTAACCAACTGATGAACAAATTCACTAT
CACGGACCTGGGAGAAGTGTCGCTGATACTAGGCATGGAAGTACTACGTA
ACAGACAAGAGGGTACTCTACAGCTGTCACAGTATAAGTACGTACTATCT
GTTTTAGAGAGGTTTGGCATGTCATCAGCCAACCCTACTAAAACACCAGG
CGTGAAAACGGACCCTACTACTACTGGCGAGGACAGCACTCTACTGGATA
CAGCAGCTACAAAAGAATCAACAACTGGTACAATGTTCTTCCTGGCAAAC
GGACTTGTACACTTCTCATCCCGACTACAGAAGATCACTGCTACAAGCAC
TACTGAGGCGGAGCTCATCGCACTAGCTGCATGCGCTAAACAAGGGACTT
ACCTGCTGAACATTTGCCGATAGATCAACAACTGGTACAATGTTCTTCCT
GGCAAACGGACTTGTACACTTCTCATCCCGACTACAGAAGATCACTGCTA
CAAGCACTACTGAGGCGGAGCTCATCGCACTAGCTGCATGCGCTAAACAA
GGGACTTACCTGCTGAACATTTGCCGATAG
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